mRNA_E_fasciculatus_S2_contig7910.16076.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.120e-73 Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = 1
Query: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYS+RVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLGDATIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 217 bits (553), Expect = 3.400e-71 Identity = 110/122 (90.16%), Postives = 119/122 (97.54%), Query Frame = 1
Query: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKKTMKK 366
MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY++RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG+ TIASGGVLPNIHAVLLPKKT+KK
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 215 bits (548), Expect = 1.160e-69 Identity = 109/121 (90.08%), Postives = 118/121 (97.52%), Query Frame = 1
Query: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKKTMK 363
MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY++RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG+ TIASGGVLPNIHAVLLPKKT+K
Sbjct: 46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 207 bits (526), Expect = 6.790e-67 Identity = 105/119 (88.24%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKKT 357
MSGKGKGGRGKK TS+S+KAGLQFPV RIGR++K+GKY+ RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG+ TIASGGVLPNIHAVLLPKK+
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 207 bits (526), Expect = 3.480e-66 Identity = 105/119 (88.24%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKKT 357
MSGKGKGGRGKK TS+S+KAGLQFPV RIGR++K+GKY+ RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG+ TIASGGVLPNIHAVLLPKK+
Sbjct: 52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA) HSP 1 Score: 200 bits (508), Expect = 3.410e-64 Identity = 102/125 (81.60%), Postives = 116/125 (92.80%), Query Frame = 1
Query: 1 MSGKGKGGRG---KKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKKTMKK 366
M+GKGKGGRG KKITS+SAKAGLQFPV R+GR++KQG+Y++RVG GAPVY+AAVLEYL AE+LELAGNAARDNKK+RI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKKT K
Sbjct: 1 MAGKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAK 125
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=4 Tax=Labyrinthulomycetes TaxID=35131 RepID=A0A2R5GVM3_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.680e-63 Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 1 MSGKGKGGRGKK---ITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKK 354
MSGKGKGGRGKK T+RSAKAGLQFPVGRI R++K+G Y+ RVGGGAPVYMAAVLEYL AE+LELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG+ TIASGGVLPNIHAVL+P K
Sbjct: 1 MSGKGKGGRGKKGGKATTRSAKAGLQFPVGRIARYLKKGGYATRVGGGAPVYMAAVLEYLAAEILELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLMPSK 121
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.800e-63 Identity = 102/121 (84.30%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 7 GKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKKTMKK 366
GKGKGGRG KK S+SAKAGLQFPVGR+GRF+KQG+Y+ RVG GAPVYMAAV+EYL AEVLEL+GNAARDNKK+RIIPRHIQLAVRNDEELNKLLG TIA+GGVLPNIHAVLLPKKT K
Sbjct: 5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 195 bits (496), Expect = 1.670e-62 Identity = 100/122 (81.97%), Postives = 112/122 (91.80%), Query Frame = 1
Query: 1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKKTMK 363
MSGKGKGGRG KK T+ SAKAGLQFPVGRIGR+++QGKY+ R+G GAPVY+AAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG TIASGGVLPNIHAVLLPKK+ K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Match: Histone (H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 196 bits (497), Expect = 1.730e-62 Identity = 98/120 (81.67%), Postives = 109/120 (90.83%), Query Frame = 1
Query: 7 GKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGDATIASGGVLPNIHAVLLPKKTMKK 366
GKGK GKK SRSAKAGLQFPVGR+ R++K+GKY+ R+G GAPVY+AAVLEYLTAEVLELAGNAARDNKK RI+PRHIQLAVRNDEEL+KLLGD TIASGGVLPNIH+VLLPKK+ KK
Sbjct: 5 GKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7910.16076.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7910.16076.1 >prot_E_fasciculatus_S2_contig7910.16076.1 ID=prot_E_fasciculatus_S2_contig7910.16076.1|Name=mRNA_E_fasciculatus_S2_contig7910.16076.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=123bp MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSNRVGGGAPVYMback to top mRNA from alignment at E_fasciculatus_S2_contig7910:914..1282- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7910.16076.1 ID=mRNA_E_fasciculatus_S2_contig7910.16076.1|Name=mRNA_E_fasciculatus_S2_contig7910.16076.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=369bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7910:914..1282- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7910:914..1282- >mRNA_E_fasciculatus_S2_contig7910.16076.1 ID=mRNA_E_fasciculatus_S2_contig7910.16076.1|Name=mRNA_E_fasciculatus_S2_contig7910.16076.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=369bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7910:914..1282- (Ectocarpus fasciculatus EfasUO2)back to top |