mRNA_E_fasciculatus_S2_contig7906.16071.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7906.16071.1
Unique NamemRNA_E_fasciculatus_S2_contig7906.16071.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7906.16071.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.440e-34
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 GGGHTYRSVSPARSGNGRADGGYVGRRVMTVAQMDQEDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGSRCLNCGSD 273
            GGG+T+RS SP     GR+DGGY GRRVMTV  MD ED+ +EF+RVY IH +P+T +Q+ DCPFF WFTS EEKDR R+AFGSRCLNCGS+
Sbjct:  157 GGGNTFRSASP-----GRSDGGYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPRTNSQVNDCPFFAWFTSVEEKDRHRRAFGSRCLNCGSE 242
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BLAST of mRNA_E_fasciculatus_S2_contig7906.16071.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 4.160e-34
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 GGGHTYRSVSPARSGNGRADGGYVGRRVMTVAQMDQEDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGSRCLNCGSD 273
            GG +T+RS SP     GR DGGY GRRVMTV ++D EDE  EF+RVY+IHV+P+T +QM+DCPFF WFTS EEKDR R+AFGSRCL CGS+
Sbjct:  153 GGTNTFRSASP-----GRLDGGYGGRRVMTVDEVDCEDECAEFQRVYDIHVSPRTNSQMKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSE 238
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BLAST of mRNA_E_fasciculatus_S2_contig7906.16071.1 vs.
Match: CCHC-type (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.090e-29
Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 GGGHTYRSVSPARSGNGRADGGYVGRRVMTVAQMDQEDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGSRCLNCGSD 273
            GG +T+RS SP     GR+DGGY GR VMTV  MD EDE  EF+RVY+IH AP+T +Q  DCPFF WFTS EEKDR RQAFG RCLNCGS+
Sbjct:  411 GGTNTFRSASP-----GRSDGGYGGR-VMTVEDMDYEDECAEFKRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRQAFGLRCLNCGSE 495
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7906.16071.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.790e-28
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:   19 RSVSPARSGNGRADGGYVGRRVMTVAQMDQEDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGSRCLNCGSD 273
            RS SP     GR+DGGY GR VMTV  MD EDE  EF+RVY+IH AP+T +Q  DCPFF WFTS EEKDR R+AFG RCLNCGS+
Sbjct:  218 RSASP-----GRSDGGYGGR-VMTVEDMDYEDECAEFQRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLRCLNCGSE 296
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7906.16071.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 8.620e-27
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   16 YRSVSPARSGNGRADGGYVGRRVMTVAQMDQEDENDEFERVYEIHVAPKTANQMRDCPFFVWFTSREEKDRQRQAFGSRCLNCGSD 273
            +RS SP     GR+DGGY GR VMTV  MD EDE  EF+RVY+IH AP+T +Q  DCPFF WFTS EEKDR R+AFG  CLNCGS+
Sbjct:  596 FRSASP-----GRSDGGYGGR-VMTVEDMDYEDECAEFKRVYDIHAAPRTNSQATDCPFFAWFTSVEEKDRHRRAFGLTCLNCGSE 675
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7906.16071.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized2.440e-3467.03protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
CCHC-type4.160e-3467.03domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CCHC-type1.090e-2967.03domain-containing protein n=2 Tax=Ectocarpus sp. C... [more]
CCHC-type3.790e-2867.06domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized8.620e-2765.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7906contigE_fasciculatus_S2_contig7906:2923..3196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size275
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.8794396-CDS-E_fasciculatus_S2_contig7906:2922..31951696842451.8794396-CDS-E_fasciculatus_S2_contig7906:2922..3195Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7906 2923..3195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7906.16071.1prot_E_fasciculatus_S2_contig7906.16071.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7906 2923..3195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7906.16071.1

>prot_E_fasciculatus_S2_contig7906.16071.1 ID=prot_E_fasciculatus_S2_contig7906.16071.1|Name=mRNA_E_fasciculatus_S2_contig7906.16071.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=91bp
GGGHTYRSVSPARSGNGRADGGYVGRRVMTVAQMDQEDENDEFERVYEIH
VAPKTANQMRDCPFFVWFTSREEKDRQRQAFGSRCLNCGSD
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mRNA from alignment at E_fasciculatus_S2_contig7906:2923..3196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7906.16071.1 ID=mRNA_E_fasciculatus_S2_contig7906.16071.1|Name=mRNA_E_fasciculatus_S2_contig7906.16071.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=274bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7906:2923..3196+ (Ectocarpus fasciculatus EfasUO2)
GGGGGAGGACACACATACCGGTCAGTGTCACCGGCAAGGTCCGGCAATGG
AAGGGCGGATGGAGGGTATGTGGGGAGGAGAGTCATGACGGTGGCACAGA
TGGACCAGGAGGACGAGAATGACGAGTTCGAAAGAGTGTATGAAATCCAT
GTAGCACCGAAAACGGCCAATCAAATGAGGGATTGCCCATTCTTTGTATG
GTTTACCTCTAGAGAGGAAAAGGACAGGCAGAGGCAAGCATTCGGGTCGA
GGTGTTTGAACTGTGGGAGTGATA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7906:2923..3196+

>mRNA_E_fasciculatus_S2_contig7906.16071.1 ID=mRNA_E_fasciculatus_S2_contig7906.16071.1|Name=mRNA_E_fasciculatus_S2_contig7906.16071.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=273bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7906:2923..3196+ (Ectocarpus fasciculatus EfasUO2)
GGGGGAGGACACACATACCGGTCAGTGTCACCGGCAAGGTCCGGCAATGG
AAGGGCGGATGGAGGGTATGTGGGGAGGAGAGTCATGACGGTGGCACAGA
TGGACCAGGAGGACGAGAATGACGAGTTCGAAAGAGTGTATGAAATCCAT
GTAGCACCGAAAACGGCCAATCAAATGAGGGATTGCCCATTCTTTGTATG
GTTTACCTCTAGAGAGGAAAAGGACAGGCAGAGGCAAGCATTCGGGTCGA
GGTGTTTGAACTGTGGGAGTGAT
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