mRNA_E_fasciculatus_S2_contig7906.16070.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7906.16070.1
Unique NamemRNA_E_fasciculatus_S2_contig7906.16070.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: CCHC-type (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.800e-59
Identity = 109/148 (73.65%), Postives = 118/148 (79.73%), Query Frame = 3
Query:    6 MIFRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ 419
            M FR KIDKVF D S+KM+EG+TG++ALA+LT ALGRVVSSSSPEKLV+DLQTF          Y T LQGLV  VRNLG+VTP D TIQLAVRESVSDQYSVLTASVF GKE G VPFD+IDTLM ELR FEAVKGGA   TR MAQ
Sbjct:  242 MTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHELRNFEAVKGGATTPTRMMAQ 389          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.870e-58
Identity = 106/146 (72.60%), Postives = 115/146 (78.77%), Query Frame = 3
Query:   12 FRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ 419
            FR KIDKVF D S+KM EG+TG++AL +LT AL RVVSSSSPEKLV+DLQT           Y TTLQGLVH VRNLG+VTP D TIQLAVRESVSDQYSVLTAS+F GKEL  V FD+IDTLM ELR FEAVKGGA   TRRMAQ
Sbjct:   40 FREKIDKVFADTSKKMDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHELRNFEAVKGGATTPTRRMAQ 185          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 3.420e-57
Identity = 104/148 (70.27%), Postives = 115/148 (77.70%), Query Frame = 3
Query:    6 MIFRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ 419
            M FR KIDK+F D S+KM+E +TGR+ALA+LT ALGRVVSSS PEKLV+DLQT           Y TTLQGLVH+VRNLG+VTP D TIQLAV ESVSDQ SVLTA VF GKELG V FD IDTLM E+R FEAV+GGA   TRRMAQ
Sbjct:  153 MTFREKIDKIFSDTSKKMEERSTGRKALAFLTSALGRVVSSSLPEKLVYDLQTLAVPTGTPYGEYLTTLQGLVHSVRNLGIVTPQDNTIQLAVGESVSDQDSVLTACVFRGKELGVVTFDHIDTLMHEVRSFEAVEGGATTPTRRMAQ 300          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 5.250e-55
Identity = 98/131 (74.81%), Postives = 105/131 (80.15%), Query Frame = 3
Query:   57 MKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ 419
            M  G+TGREAL +LT ALGRVVSSSSPEKLV+DLQTF          Y TTL GLVH VRNLG+VTP D TIQLAVRESVSDQYSVLTASVF GK+LG VPFD+IDTLM+ELR FEAVKGGA   TRR AQ
Sbjct:    1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQELRNFEAVKGGATTPTRRSAQ 131          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.670e-44
Identity = 87/137 (63.50%), Postives = 100/137 (72.99%), Query Frame = 3
Query:   12 FRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGA 392
            FR KI KVF D S+K++EG+TGR+ALA+LT ALGRVV+SSSPEK+V+DLQTF          Y TTLQGL H VRNL +VTP D TIQLAVRE VSDQYSVLTASV  GKELG V FD+  T     R+   VKG +
Sbjct:    9 FREKIGKVFSDTSKKIEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQFDNXPT-----RRMAQVKGSS 140          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.040e-34
Identity = 79/117 (67.52%), Postives = 85/117 (72.65%), Query Frame = 3
Query:   69 ATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGG 389
            ATG++ALA+LT ALGRVVSSSSPEKLV+DLQTF          Y TTLQGLVH VRNL +VTP D TIQLAVRESVSDQYSVLTASVF GKELG              R F+AVKGG
Sbjct:  457 ATGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG--------------RNFKAVKGG 559          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.810e-29
Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   57 MKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELG 320
            M+EG+TG++ALA+LT ALG+VVSSSSPEKLV+DLQ F          Y TTLQGLVH VRNLG+VTP D TIQLAVRESVSDQ+         G+ +G
Sbjct:    1 MEEGSTGKKALAFLTSALGKVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQHKCFDRFRVQGQGVG 98          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 5.970e-17
Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 3
Query:   15 RGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMREL 362
            + KI   F    +++  G  GREAL +L   L R +S ++P+ +VF LQ            Y  TL+ LV    ++G  +  D  +QLAVR+SV DQYS +   VF G++L AVP+DSI  LM  L
Sbjct:  541 KAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDAL 666          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 8.740e-11
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 3
Query:   57 MKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF 167
            M+EG+TGR+AL +LT ALGRVVSSSSPEKLV+DLQTF
Sbjct:    1 MEEGSTGRKALTFLTSALGRVVSSSSPEKLVYDLQTF 37          
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.410e-10
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   51 RKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMREL 362
            R M  G +G +AL  L  A+   +S+ +P  ++  LQ F          Y   L+ LV +V+ +G     DGT+Q+AV+  V+DQY+ LTA VF G+   A+P+DS+++LM  L
Sbjct:   88 RAMDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFAE--DGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEAL 199          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
CCHC-type2.800e-5973.65domain-containing protein n=2 Tax=Ectocarpus sp. C... [more]
CCHC-type2.870e-5872.60domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.420e-5770.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
CCHC-type5.250e-5574.81domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.670e-4463.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.040e-3467.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.810e-2962.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
CCHC-type5.970e-1738.89domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized8.740e-1181.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.410e-1036.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7906contigE_fasciculatus_S2_contig7906:2414..2862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size421
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionZinc finger, CCHC-type
Ec32 orthologEc-00_009740.1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.8308094-UTR-E_fasciculatus_S2_contig7906:2413..24181696842451.8308094-UTR-E_fasciculatus_S2_contig7906:2413..2418Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7906 2414..2418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842451.8414953-CDS-E_fasciculatus_S2_contig7906:2418..25801696842451.8414953-CDS-E_fasciculatus_S2_contig7906:2418..2580Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7906 2419..2580 +
1696842451.851159-CDS-E_fasciculatus_S2_contig7906:2610..28621696842451.851159-CDS-E_fasciculatus_S2_contig7906:2610..2862Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7906 2611..2862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7906.16070.1prot_E_fasciculatus_S2_contig7906.16070.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7906 2419..2862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7906.16070.1

>prot_E_fasciculatus_S2_contig7906.16070.1 ID=prot_E_fasciculatus_S2_contig7906.16070.1|Name=mRNA_E_fasciculatus_S2_contig7906.16070.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=138bp
MIFRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFD
LQTFYFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFS
GKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ
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mRNA from alignment at E_fasciculatus_S2_contig7906:2414..2862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7906.16070.1 ID=mRNA_E_fasciculatus_S2_contig7906.16070.1|Name=mRNA_E_fasciculatus_S2_contig7906.16070.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=449bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7906:2414..2862+ (Ectocarpus fasciculatus EfasUO2)
AGGCGATGATTTTCCGTGGGAAGATCGACAAGGTGTTTGACGATGTGTCC CGCAAGATGAAGGAGGGGGCGACGGGTAGAGAGGCGTTGGCATACTTGAC CATGGCGTTGGGAAGGGTGGTGAGTTCATCCTCGCCTGAGAAGTTGGTGT TCGACCTGCAGACTTTTGTGGTACCGACAAACACGCCATACAATGAGTAC TTTACTACTCTGCAGGGGTTGGTACACACTGTGAGAAACTTGGGCATGGT GACGCCGCCGGATGGTACCATTCAACTGGCGGTCAGAGAGAGTGTGTCTG ACCAATACAGTGTGCTGACGGCATCGGTGTTCAGTGGCAAGGAGTTGGGA GCGGTGCCATTTGATAGCATTGACACTTTGATGCGTGAACTGCGCAAATT CGAGGCGGTGAAGGGGGGTGCAGTGGCCGCGACGAGGAGAATGGCTCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7906:2414..2862+

>mRNA_E_fasciculatus_S2_contig7906.16070.1 ID=mRNA_E_fasciculatus_S2_contig7906.16070.1|Name=mRNA_E_fasciculatus_S2_contig7906.16070.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7906:2414..2862+ (Ectocarpus fasciculatus EfasUO2)
ATGATTTTCCGTGGGAAGATCGACAAGGTGTTTGACGATGTGTCCCGCAA
GATGAAGGAGGGGGCGACGGGTAGAGAGGCGTTGGCATACTTGACCATGG
CGTTGGGAAGGGTGGTGAGTTCATCCTCGCCTGAGAAGTTGGTGTTCGAC
CTGCAGACTTTTTACTTTACTACTCTGCAGGGGTTGGTACACACTGTGAG
AAACTTGGGCATGGTGACGCCGCCGGATGGTACCATTCAACTGGCGGTCA
GAGAGAGTGTGTCTGACCAATACAGTGTGCTGACGGCATCGGTGTTCAGT
GGCAAGGAGTTGGGAGCGGTGCCATTTGATAGCATTGACACTTTGATGCG
TGAACTGCGCAAATTCGAGGCGGTGAAGGGGGGTGCAGTGGCCGCGACGA
GGAGAATGGCTCAG
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