mRNA_E_fasciculatus_S2_contig7906.16070.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: CCHC-type (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE) HSP 1 Score: 201 bits (510), Expect = 2.800e-59 Identity = 109/148 (73.65%), Postives = 118/148 (79.73%), Query Frame = 3
Query: 6 MIFRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ 419
M FR KIDKVF D S+KM+EG+TG++ALA+LT ALGRVVSSSSPEKLV+DLQTF Y T LQGLV VRNLG+VTP D TIQLAVRESVSDQYSVLTASVF GKE G VPFD+IDTLM ELR FEAVKGGA TR MAQ
Sbjct: 242 MTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHELRNFEAVKGGATTPTRMMAQ 389
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE) HSP 1 Score: 193 bits (490), Expect = 2.870e-58 Identity = 106/146 (72.60%), Postives = 115/146 (78.77%), Query Frame = 3
Query: 12 FRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ 419
FR KIDKVF D S+KM EG+TG++AL +LT AL RVVSSSSPEKLV+DLQT Y TTLQGLVH VRNLG+VTP D TIQLAVRESVSDQYSVLTAS+F GKEL V FD+IDTLM ELR FEAVKGGA TRRMAQ
Sbjct: 40 FREKIDKVFADTSKKMDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHELRNFEAVKGGATTPTRRMAQ 185
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE) HSP 1 Score: 189 bits (481), Expect = 3.420e-57 Identity = 104/148 (70.27%), Postives = 115/148 (77.70%), Query Frame = 3
Query: 6 MIFRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ 419
M FR KIDK+F D S+KM+E +TGR+ALA+LT ALGRVVSSS PEKLV+DLQT Y TTLQGLVH+VRNLG+VTP D TIQLAV ESVSDQ SVLTA VF GKELG V FD IDTLM E+R FEAV+GGA TRRMAQ
Sbjct: 153 MTFREKIDKIFSDTSKKMEERSTGRKALAFLTSALGRVVSSSLPEKLVYDLQTLAVPTGTPYGEYLTTLQGLVHSVRNLGIVTPQDNTIQLAVGESVSDQDSVLTACVFRGKELGVVTFDHIDTLMHEVRSFEAVEGGATTPTRRMAQ 300
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI) HSP 1 Score: 181 bits (460), Expect = 5.250e-55 Identity = 98/131 (74.81%), Postives = 105/131 (80.15%), Query Frame = 3
Query: 57 MKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGAVAATRRMAQ 419
M G+TGREAL +LT ALGRVVSSSSPEKLV+DLQTF Y TTL GLVH VRNLG+VTP D TIQLAVRESVSDQYSVLTASVF GK+LG VPFD+IDTLM+ELR FEAVKGGA TRR AQ
Sbjct: 1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQELRNFEAVKGGATTPTRRSAQ 131
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 155 bits (391), Expect = 3.670e-44 Identity = 87/137 (63.50%), Postives = 100/137 (72.99%), Query Frame = 3
Query: 12 FRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGGA 392
FR KI KVF D S+K++EG+TGR+ALA+LT ALGRVV+SSSPEK+V+DLQTF Y TTLQGL H VRNL +VTP D TIQLAVRE VSDQYSVLTASV GKELG V FD+ T R+ VKG +
Sbjct: 9 FREKIGKVFSDTSKKIEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQFDNXPT-----RRMAQVKGSS 140
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.040e-34 Identity = 79/117 (67.52%), Postives = 85/117 (72.65%), Query Frame = 3
Query: 69 ATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMRELRKFEAVKGG 389
ATG++ALA+LT ALGRVVSSSSPEKLV+DLQTF Y TTLQGLVH VRNL +VTP D TIQLAVRESVSDQYSVLTASVF GKELG R F+AVKGG
Sbjct: 457 ATGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG--------------RNFKAVKGG 559
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.810e-29 Identity = 61/98 (62.24%), Postives = 72/98 (73.47%), Query Frame = 3
Query: 57 MKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELG 320
M+EG+TG++ALA+LT ALG+VVSSSSPEKLV+DLQ F Y TTLQGLVH VRNLG+VTP D TIQLAVRESVSDQ+ G+ +G
Sbjct: 1 MEEGSTGKKALAFLTSALGKVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQHKCFDRFRVQGQGVG 98
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 5.970e-17 Identity = 49/126 (38.89%), Postives = 69/126 (54.76%), Query Frame = 3
Query: 15 RGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMREL 362
+ KI F +++ G GREAL +L L R +S ++P+ +VF LQ Y TL+ LV ++G + D +QLAVR+SV DQYS + VF G++L AVP+DSI LM L
Sbjct: 541 KAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDAL 666
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S7_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 8.740e-11 Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 3
Query: 57 MKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF 167
M+EG+TGR+AL +LT ALGRVVSSSSPEKLV+DLQTF
Sbjct: 1 MEEGSTGRKALTFLTSALGRVVSSSSPEKLVYDLQTF 37
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 1.410e-10 Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 3
Query: 51 RKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDLQTF----------YFTTLQGLVHTVRNLGMVTPPDGTIQLAVRESVSDQYSVLTASVFSGKELGAVPFDSIDTLMREL 362
R M G +G +AL L A+ +S+ +P ++ LQ F Y L+ LV +V+ +G DGT+Q+AV+ V+DQY+ LTA VF G+ A+P+DS+++LM L
Sbjct: 88 RAMDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFAE--DGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEAL 199 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7906.16070.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7906.16070.1 >prot_E_fasciculatus_S2_contig7906.16070.1 ID=prot_E_fasciculatus_S2_contig7906.16070.1|Name=mRNA_E_fasciculatus_S2_contig7906.16070.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=138bp MIFRGKIDKVFDDVSRKMKEGATGREALAYLTMALGRVVSSSSPEKLVFDback to top mRNA from alignment at E_fasciculatus_S2_contig7906:2414..2862+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7906.16070.1 ID=mRNA_E_fasciculatus_S2_contig7906.16070.1|Name=mRNA_E_fasciculatus_S2_contig7906.16070.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=449bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7906:2414..2862+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7906:2414..2862+ >mRNA_E_fasciculatus_S2_contig7906.16070.1 ID=mRNA_E_fasciculatus_S2_contig7906.16070.1|Name=mRNA_E_fasciculatus_S2_contig7906.16070.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7906:2414..2862+ (Ectocarpus fasciculatus EfasUO2)back to top |