mRNA_E_fasciculatus_S2_contig7893.16053.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig7893.16053.1
Unique Name	mRNA_E_fasciculatus_S2_contig7893.16053.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig7893.16053.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 2.640e-81
Identity = 145/178 (81.46%), Postives = 152/178 (85.39%), Query Frame = 2

Query:    2 DIHVSNRHNSHDVMPPRETCGTPRGTYRASRIYRRTRTNERAARRWRKIGMPFELRALPRGSDAANNITRVEGGASKRSYLPNSRSGPRRPSRKRQGVVEERTKPLTEMKKMLYDSRSGDWRKALSALDEMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAPPDLSA 535
            D HVSNR +SHDVMPPR+TC T R  +RASR+YRRTR N RA RRW K GMPFELRALP GSDAANNI R +GG SKR  L NSRSGP RPSR+RQG VE  TK LTEMKKMLYDSRSGDWRKAL A+D MKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGA PDLSA
Sbjct:   29 DFHVSNRQSSHDVMPPRDTCVTSRRAHRASRVYRRTRANGRAVRRWLKTGMPFELRALPPGSDAANNIARADGGNSKRPPLSNSRSGPSRPSRRRQGAVEAGTKSLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSA 206

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7893.16053.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX4_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 1.670e-58
Identity = 121/164 (73.78%), Postives = 133/164 (81.10%), Query Frame = 2

Query:   41 MPPRETCGTPRGTYRASRIYRRTRTNERAARRWRKIGMPFELRALPRGSDAANNIT-RVEGGASKRSYLPNSRSGPRRPSRKRQGVVEERTKPLTEMKKMLYDSRSGDWRKALSALDEMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAPPDL 529
            +P RE CGTPRGT RASR+YRRTRTNE AARRWR+ G  FELRALPRGSDAANNIT RVEGGA    YLP+SR  P RP  KRQGVVE RTK  T++  ML DS SGDWRKAL ALD M++LPG L+DQ+S+CMAITACGRG QWEQAVRLLREMPT G  P+L
Sbjct:    4 LPLREACGTPRGTSRASRLYRRTRTNECAARRWREAGTLFELRALPRGSDAANNITSRVEGGARNGLYLPDSRPRPSRPVGKRQGVVEGRTKSRTKLTTMLRDSGSGDWRKALRALDGMRQLPGGLLDQESFCMAITACGRGKQWEQAVRLLREMPTAGLTPNL 167

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7893.16053.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ9_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.090e-16
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 2

Query:  335 MLYDSRSGDWRKALSALDEMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAPPDL 529
            M  DSR GD RKAL ALD MK+LP  L+ QKS+CM ITACGRGGQWEQAV+LLREMPT G  P++
Sbjct:    1 MPRDSRGGDRRKALRALDGMKRLPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGLSPNV 65

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7893.16053.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.580e-6
Identity = 57/169 (33.73%), Postives = 80/169 (47.34%), Query Frame = 2

Query:   29 SHDVMPPRETCG-TPRGTYRASRIYRRTRTNERAARRWRKIGMPFELRALPRGSDAANNITRVEGGASKRSYLPNSRSGPRRPSRKRQGVVEERTKPLTEMKKMLYDSRSGDWRKALSALDEMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPT-EGAPPDL 529
            SH  +P    CG    G Y +S + R  R+  RAA               P+  +A   +T ++G A       NSR+     +RK Q  + E              + +G WR+AL  LDEMK+  G ++   SY  AIT CGR GQWE+A+ LLRE+P  EG  P++
Sbjct:   53 SHSAIPAHPACGGAAGGVYHSSPMRRHARSCCRAA---------------PKLGEATAVVT-MQGAA-----RANSRA-----ARKLQAALREA-------------ATTGKWREALGILDEMKE--GGVVCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNV 180

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig7893.16053.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig7893.16053.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
Uncharacterized	2.640e-81	81.46	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5...	[more]
Uncharacterized	1.670e-58	73.78	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.090e-16	70.77	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	1.580e-6	33.73	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG06...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig7893	contig	E_fasciculatus_S2_contig7893:1305..3973 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	139.8
Seed ortholog evalue	4.8e-30
Seed eggNOG ortholog	2880.D8LII2
Model size	2669
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	endonuclease activity
EggNOG OGs	KOG4197@1,KOG4197@2759
Ec32 ortholog description	Pentatricopeptide repeat
Ec32 ortholog	Ec-18_003540.1
Cds size	2109
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842449.7964647-UTR-E_fasciculatus_S2_contig7893:1304..1344	1696842449.7964647-UTR-E_fasciculatus_S2_contig7893:1304..1344	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig7893 1305..1344 +
1696842449.8211145-UTR-E_fasciculatus_S2_contig7893:3453..3973	1696842449.8211145-UTR-E_fasciculatus_S2_contig7893:3453..3973	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig7893 3454..3973 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842449.8087316-CDS-E_fasciculatus_S2_contig7893:1344..3453	1696842449.8087316-CDS-E_fasciculatus_S2_contig7893:1344..3453	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7893 1345..3453 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig7893.16053.1	prot_E_fasciculatus_S2_contig7893.16053.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig7893 1345..3453 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig7893:1305..3973+
coding sequence from alignment at E_fasciculatus_S2_contig7893:1305..3973+

protein sequence of mRNA_E_fasciculatus_S2_contig7893.16053.1

>prot_E_fasciculatus_S2_contig7893.16053.1 ID=prot_E_fasciculatus_S2_contig7893.16053.1|Name=mRNA_E_fasciculatus_S2_contig7893.16053.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=703bp
MPPRETCGTPRGTYRASRIYRRTRTNERAARRWRKIGMPFELRALPRGSD
AANNITRVEGGASKRSYLPNSRSGPRRPSRKRQGVVEERTKPLTEMKKML
YDSRSGDWRKALSALDEMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRL
LREMPTEGAPPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARS
YGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWE
IAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELLEDMRTSGIA
PDVITYGSAIAACANEGRWKEAVSLLRKIPTAGLTPNVISYSSVITACAK
EGQWKIALDLLREMKTMGLTPNIITYNAAIDACAKGGRWKEAMDLLREMP
TVGLRPDVVSYSSVIDACSKGDRWKEAVDILREMPTVGLPPNAISYNSAI
DACAKGGQWKEAKCLLREMPTASLTQRVIGYNSAIAACAKGEQWKEALAL
LREIPTVGLTTTEFSYSSAIDACGKGNLWIKAKGLLREMATVGLVPNEVC
YNSAIDACGRGDQWQEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWK
EALALLKEMSTTGLAPDLICYNSAIDACSKGGRWKMAVALLSEMPEAGLT
PNIISYSSAIDACVRGGRWKEGIDLLEEMRALGVVPDVITYHALIATCAK
YD*

mRNA from alignment at E_fasciculatus_S2_contig7893:1305..3973+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig7893.16053.1 ID=mRNA_E_fasciculatus_S2_contig7893.16053.1|Name=mRNA_E_fasciculatus_S2_contig7893.16053.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2669bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7893:1305..3973+ (Ectocarpus fasciculatus EfasUO2)
AGATATTCATGTGTCGAACCGGCACAATTCGCATGATGTGATGCCCCCGC
GTGAGACCTGTGGGACCCCGAGAGGGACCTACCGGGCCTCCCGTATATAC
CGGCGTACGCGGACAAATGAGCGCGCTGCCCGAAGATGGCGGAAAATAGG
AATGCCGTTCGAGCTCCGTGCTCTACCTCGCGGTTCGGATGCCGCAAATA
ACATCACTAGGGTTGAGGGCGGAGCTAGCAAACGATCATACCTGCCCAAT
TCCAGATCTGGGCCAAGGCGACCTTCGAGGAAAAGGCAGGGTGTGGTGGA
GGAGCGTACCAAACCTCTCACGGAGATGAAAAAAATGCTGTATGATTCGA
GGAGCGGGGACTGGAGAAAAGCGCTTAGCGCTCTAGATGAGATGAAAAAG
TTGCCTGGCTGGCTCATCGATCAGAAATCGTACTGCATGGCCATCACTGC
GTGTGGGAGGGGGGGGCAGTGGGAACAAGCTGTGAGGCTACTGAGAGAGA
TGCCGACGGAAGGGGCTCCCCCTGACTTGAGCGCATACAGCGCAGTCATT
GATGCGTGTGCGAAGGGAGGCCAGTGGAAGATGGCTGTGTTCTTTCTGAT
GGAGATGCCGACGAAAGGCATAGCCCCTGATGCCCGCAGCTACGGCGCAG
CCATCAACGCCTGTGCAAGGGGCGGTCGGTGGAAGATTGCGCTTGACCTC
CTAAGAGAGATGCTCGCACGGGATGTTACTCCCAACGTCATCATCTACAA
CTCAGCAATTAATTCGTGTGCCAAGGCGGGTCAGTGGGAGATTGCTGTGA
GTCTGGTGAAGGAAATGGCAACAGTAGGGCTTGCCCCCGATGTCATCAGC
TACAGCTCAGCGATCTCGGCATGTGGAAGGGGGGGGCGTTGGGAGGAAGC
TTTGGAGTTACTCGAGGATATGCGCACGTCGGGAATAGCCCCCGATGTCA
TCACGTACGGTTCCGCCATCGCTGCGTGCGCCAATGAGGGTCGTTGGAAG
GAGGCTGTGAGCTTGCTGAGGAAGATTCCGACGGCAGGACTAACTCCCAA
CGTCATCAGCTACAGCTCGGTCATCACCGCTTGCGCCAAGGAAGGTCAAT
GGAAAATTGCTTTGGATCTGCTGAGAGAGATGAAAACGATGGGTTTAACT
CCCAATATCATTACCTACAATGCAGCCATCGATGCTTGCGCCAAGGGCGG
CCGATGGAAGGAGGCCATGGATCTCCTGAGAGAGATGCCAACGGTAGGGC
TACGCCCCGATGTCGTAAGCTACAGCTCAGTCATTGATGCTTGTTCAAAA
GGGGACCGATGGAAGGAGGCTGTGGATATTCTGAGGGAGATGCCGACGGT
CGGGCTACCTCCCAACGCCATCAGCTATAATTCTGCCATCGATGCCTGTG
CAAAGGGAGGACAGTGGAAAGAAGCCAAGTGTCTGCTGAGGGAGATGCCG
ACGGCGAGTCTTACGCAGAGAGTCATTGGCTACAACTCAGCTATTGCTGC
GTGCGCAAAGGGGGAGCAGTGGAAGGAGGCTTTGGCTCTGCTTAGAGAGA
TACCGACTGTGGGGCTAACCACCACCGAGTTCAGCTACAGCTCTGCCATC
GATGCGTGTGGAAAAGGGAATCTGTGGATTAAGGCCAAAGGTTTACTTAG
AGAGATGGCAACGGTAGGACTTGTTCCAAATGAAGTCTGCTACAACTCCG
CCATTGATGCGTGTGGGAGGGGGGATCAGTGGCAAGAGGCCGTAGACCTA
TTGAGAGAGATGCCGACGGTAGGGCTTTCCCCCGATGTTTTCAGCTACAG
CTCAGCTATCGCTGCGTGCGCGAAGGGCGATCAATGGAAGGAGGCCCTGG
CGCTGCTGAAGGAGATGAGCACGACAGGGCTTGCCCCCGATCTCATTTGC
TACAACTCGGCCATCGACGCTTGTTCCAAAGGAGGTCGGTGGAAGATGGC
TGTGGCGCTACTGAGCGAGATGCCGGAGGCAGGGCTGACTCCCAACATCA
TAAGTTACAGCTCTGCTATCGACGCGTGCGTACGGGGAGGTCGGTGGAAG
GAAGGCATAGATCTACTAGAGGAAATGCGTGCGTTGGGAGTTGTCCCCGA
CGTCATTACCTACCACGCCTTAATTGCCACGTGCGCGAAGTACGACTAGC
GTGGGTGTGGTGAGAGAGGTCGCGGCGTTGTTAGCAGCTCTGTCTCTTAC
TTCGTCATTATTGTCAGTAGTCGGGGGCGACATCACGTGCAAGTCATGGA
GTATATTTCAGCCCTCGTGTGGATTCCTTGTGCCTGTGGATGCAGCTCAA
GTCGCTCCTTCCTGTGCATTGATGATTGCGGTAATTTTTAAAAGATCTTT
GCCCTTGCTGTGTTCTTCACTTCAATGAGGCACAAGTAGCAACCTGGAAA
GTTGTTGTATTTTCTGTTGATGAAGAGCTTGTCTCGCGAGCAGAACAATC
ACTGAGTCGATCGATTTTCTCGGGGCCAGTGACTGCCACTGCCGCGACTA
TGGCTACGGTTGATAGAACGGTTAAATACCTGCGAAGCGCGAGCGTGCTT
TCACGCTGCAGCTCACTGCGTGATAAAACTATCGTGCGGCGATCGCCTTT
TCAACTACCCGAACAAGGTGCCTTATCAGATTTCGCAACATCGGGATGCC
AACACCCCATTCAGTGCGG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7893:1305..3973+

>mRNA_E_fasciculatus_S2_contig7893.16053.1 ID=mRNA_E_fasciculatus_S2_contig7893.16053.1|Name=mRNA_E_fasciculatus_S2_contig7893.16053.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2109bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7893:1305..3973+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCCCGCGTGAGACCTGTGGGACCCCGAGAGGGACCTACCGGGCCTC
CCGTATATACCGGCGTACGCGGACAAATGAGCGCGCTGCCCGAAGATGGC
GGAAAATAGGAATGCCGTTCGAGCTCCGTGCTCTACCTCGCGGTTCGGAT
GCCGCAAATAACATCACTAGGGTTGAGGGCGGAGCTAGCAAACGATCATA
CCTGCCCAATTCCAGATCTGGGCCAAGGCGACCTTCGAGGAAAAGGCAGG
GTGTGGTGGAGGAGCGTACCAAACCTCTCACGGAGATGAAAAAAATGCTG
TATGATTCGAGGAGCGGGGACTGGAGAAAAGCGCTTAGCGCTCTAGATGA
GATGAAAAAGTTGCCTGGCTGGCTCATCGATCAGAAATCGTACTGCATGG
CCATCACTGCGTGTGGGAGGGGGGGGCAGTGGGAACAAGCTGTGAGGCTA
CTGAGAGAGATGCCGACGGAAGGGGCTCCCCCTGACTTGAGCGCATACAG
CGCAGTCATTGATGCGTGTGCGAAGGGAGGCCAGTGGAAGATGGCTGTGT
TCTTTCTGATGGAGATGCCGACGAAAGGCATAGCCCCTGATGCCCGCAGC
TACGGCGCAGCCATCAACGCCTGTGCAAGGGGCGGTCGGTGGAAGATTGC
GCTTGACCTCCTAAGAGAGATGCTCGCACGGGATGTTACTCCCAACGTCA
TCATCTACAACTCAGCAATTAATTCGTGTGCCAAGGCGGGTCAGTGGGAG
ATTGCTGTGAGTCTGGTGAAGGAAATGGCAACAGTAGGGCTTGCCCCCGA
TGTCATCAGCTACAGCTCAGCGATCTCGGCATGTGGAAGGGGGGGGCGTT
GGGAGGAAGCTTTGGAGTTACTCGAGGATATGCGCACGTCGGGAATAGCC
CCCGATGTCATCACGTACGGTTCCGCCATCGCTGCGTGCGCCAATGAGGG
TCGTTGGAAGGAGGCTGTGAGCTTGCTGAGGAAGATTCCGACGGCAGGAC
TAACTCCCAACGTCATCAGCTACAGCTCGGTCATCACCGCTTGCGCCAAG
GAAGGTCAATGGAAAATTGCTTTGGATCTGCTGAGAGAGATGAAAACGAT
GGGTTTAACTCCCAATATCATTACCTACAATGCAGCCATCGATGCTTGCG
CCAAGGGCGGCCGATGGAAGGAGGCCATGGATCTCCTGAGAGAGATGCCA
ACGGTAGGGCTACGCCCCGATGTCGTAAGCTACAGCTCAGTCATTGATGC
TTGTTCAAAAGGGGACCGATGGAAGGAGGCTGTGGATATTCTGAGGGAGA
TGCCGACGGTCGGGCTACCTCCCAACGCCATCAGCTATAATTCTGCCATC
GATGCCTGTGCAAAGGGAGGACAGTGGAAAGAAGCCAAGTGTCTGCTGAG
GGAGATGCCGACGGCGAGTCTTACGCAGAGAGTCATTGGCTACAACTCAG
CTATTGCTGCGTGCGCAAAGGGGGAGCAGTGGAAGGAGGCTTTGGCTCTG
CTTAGAGAGATACCGACTGTGGGGCTAACCACCACCGAGTTCAGCTACAG
CTCTGCCATCGATGCGTGTGGAAAAGGGAATCTGTGGATTAAGGCCAAAG
GTTTACTTAGAGAGATGGCAACGGTAGGACTTGTTCCAAATGAAGTCTGC
TACAACTCCGCCATTGATGCGTGTGGGAGGGGGGATCAGTGGCAAGAGGC
CGTAGACCTATTGAGAGAGATGCCGACGGTAGGGCTTTCCCCCGATGTTT
TCAGCTACAGCTCAGCTATCGCTGCGTGCGCGAAGGGCGATCAATGGAAG
GAGGCCCTGGCGCTGCTGAAGGAGATGAGCACGACAGGGCTTGCCCCCGA
TCTCATTTGCTACAACTCGGCCATCGACGCTTGTTCCAAAGGAGGTCGGT
GGAAGATGGCTGTGGCGCTACTGAGCGAGATGCCGGAGGCAGGGCTGACT
CCCAACATCATAAGTTACAGCTCTGCTATCGACGCGTGCGTACGGGGAGG
TCGGTGGAAGGAAGGCATAGATCTACTAGAGGAAATGCGTGCGTTGGGAG
TTGTCCCCGACGTCATTACCTACCACGCCTTAATTGCCACGTGCGCGAAG
TACGACTAG