mRNA_E_fasciculatus_S2_contig7886.16047.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7886.16047.1
Unique NamemRNA_E_fasciculatus_S2_contig7886.16047.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7886.16047.1 vs.
Match: Lipase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH7_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.030e-30
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:  172 AKAKCPLS-------SKVEVDSLIEMLPNVVLSIREDKYEHLDTMWADTAKDTVFPKVETLVRQMCPTTGNGGPTIW 381
            A+  CP++         VEV+SLIE+LPNVVLSIREDKYEHLDTMWADTAKDTVFPKVETLVRQMCPTTGNGGPTIW
Sbjct:  310 ARVSCPVAIVYGGRDHLVEVESLIEILPNVVLSIREDKYEHLDTMWADTAKDTVFPKVETLVRQMCPTTGNGGPTIW 386
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BLAST of mRNA_E_fasciculatus_S2_contig7886.16047.1 vs.
Match: Lipase (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.110e-10
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  202 VEVDSLIEMLPNVVLSIREDKYEHLDTMWADTAKDTVFPKVETLVRQMCP 351
            VE +SL   LPN VLS  EDKYEHLDTMWADTAKD +FP++  L+R + P
Sbjct:  300 VECESLSAELPNCVLSHCEDKYEHLDTMWADTAKDAIFPRLHALLRALPP 349
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7886.16047.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Lipase2.030e-3079.22n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Lipase9.110e-1064.00n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7886contigE_fasciculatus_S2_contig7886:5359..7006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score128.3
Seed ortholog evalue2e-27
Seed eggNOG ortholog2880.D7FYH7
Preferred nameTGL1
Model size812
KEGG rclassRC00055,RC00523
KEGG koko:K01052
KEGG ReactionR01462
KEGG Pathwayko00100,ko04142,ko04979,map00100,map04142,map04979
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004771,GO:0005575,GO:0005622,GO:0005623,GO:0005811,GO:0006066,GO:0006629,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009058,GO:0009987,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044425,GO:0044464,GO:0046165,GO:0052689,GO:0071704,GO:0097384,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
Exons3
EggNOG free text desc.hydrolase activity, acting on ester bonds
EggNOG OGsCOG0596@1,KOG2624@2759
EC3.1.1.13
Cds size294
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842449.2211392-UTR-E_fasciculatus_S2_contig7886:5358..57861696842449.2211392-UTR-E_fasciculatus_S2_contig7886:5358..5786Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7886 5359..5786 -
1696842449.2718065-UTR-E_fasciculatus_S2_contig7886:6916..70061696842449.2718065-UTR-E_fasciculatus_S2_contig7886:6916..7006Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7886 6917..7006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842449.2345796-CDS-E_fasciculatus_S2_contig7886:5786..58491696842449.2345796-CDS-E_fasciculatus_S2_contig7886:5786..5849Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7886 5787..5849 -
1696842449.2443168-CDS-E_fasciculatus_S2_contig7886:6400..65191696842449.2443168-CDS-E_fasciculatus_S2_contig7886:6400..6519Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7886 6401..6519 -
1696842449.2553012-CDS-E_fasciculatus_S2_contig7886:6804..69161696842449.2553012-CDS-E_fasciculatus_S2_contig7886:6804..6916Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7886 6805..6916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7886.16047.1prot_E_fasciculatus_S2_contig7886.16047.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7886 5787..6916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7886.16047.1

>prot_E_fasciculatus_S2_contig7886.16047.1 ID=prot_E_fasciculatus_S2_contig7886.16047.1|Name=mRNA_E_fasciculatus_S2_contig7886.16047.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
MHPISQAPKLELFPHPLGWGELELRMSAKAKCPLSSKVEVDSLIEMLPNV
VLSIREDKYEHLDTMWADTAKDTVFPKVETLVRQMCPTTGNGGPTIW*
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mRNA from alignment at E_fasciculatus_S2_contig7886:5359..7006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7886.16047.1 ID=mRNA_E_fasciculatus_S2_contig7886.16047.1|Name=mRNA_E_fasciculatus_S2_contig7886.16047.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1648bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7886:5359..7006- (Ectocarpus fasciculatus EfasUO2)
TGCAGGGTTTGTTGCCGTGAAGTCTTGGGAGAGTGTCAAGTAGGTCTTGT
TCCCGCCTCTGGAAGGATAAGAAAAAGAGGCTTTCCATGGATGCATCCTA
TCTCACAGGCACCTAAATTGGAGCTCTTTCCGCACCCCCTTGGTTGGGGG
GAACTCGAGCTTCGAATGTCGGCAAAGGCGAAGTGCCCTCTCTCCTCTAA
AGGTGCGTGAGGCGGTTCTTCGTTTTCACTACAAGAGTGAGGACACACAA
CCAAGAACCAGCGTCTTGGTGCCTGAGCAAGACGGCCTGAATCGCCTGAG
ACGGTCCGATACTGTTTCCATGCCTCCCTTGTCAACACGCATGCGCAACC
GTTCCCCCCCGTGTGTGCCCGCCTGTTTGTCGAGGGTCCCGAGAGATCGT
CCGCGCCGCACGCCGTGGGCGTCCAATGACCTCGTTCCGCCGCTACGTAA
TTTTCATCGCTGCCGATGCCTGTTGCCCCGTCCGCAGTTGAGGTGGATTC
GCTGATAGAGATGCTGCCAAACGTGGTTCTGTCCATCCGGGAAGACAAGT
ACGAGCACCTCGACACCATGTGGGCGGACACCGCGAAGGACACGGTGTTC
CCGAAGGTGTGAAGGCTTTTTTTTCGCGTGCCCGCATTCTTGCCGCGCGC
GTGTTTTTGTTTTTGTTCTCCTCTCGAGAAGGTGTGCTGTTCGCCGTTCT
CCGAGCTGCTCACCGGTCTCGTTGTTTCGCCGATGCAAAGCGTTGAAGAC
ATAAAAGAGTGTGCGTGAGCCGTGCAGCGCCTGGCATTTGTTGAAAACCT
GTTTCAGGTACAAAGTCGCGATTGCAGGGTTGCAATGTAGGCGGTAGAAC
CACCATCTGTGACACCCATCTTCTGGAGCGGTTGGTCACTGTAGCTAGCA
GGTTATTTGCCGACAGCCGCGGTACGTCGTGGTGGCGCGAACCACAACCA
CAACCGCCGTGAGGCAGCACGGCTCGAGATGCTATGTCGTTGTTCTTTCA
AGCACTTGAGGTTTGCTCCTGCTTCTCCCTGGCGTCCGACCGACGTCAGC
GGCAGTGACAAAGCGTTGGAGATATATCAGTTTCTCTTGTGCTGTGCTGG
CCGCTGCCCTCAGCACGGAACCTCCCCTGCACGCACGCGCGCACTTTTGT
TGAGCAGGTGGAGACTTTGGTGCGCCAAATGTGTCCAACGACGGGAAACG
GCGGCCCTACCATCTGGTGACTGGGCCTCAAGTCCAGGCTTTCAGCTCAG
TCGGCCGTTCGGATGTGTAACTTGGGTACCACGCAAATTGTTCGGGGTGG
AGGGGGCACAAGCTGGTGGGGGTAGCAGTGGAGGAATGTGAAAGTGGGGT
TCATCGTTGATCTAGTGTGATGAGAAAATATTAATGCGCAGGCTGAAACT
GGAAACCTATTCACGACAGGGGTTTCAGAAGAAGATGGCATGTTGTCAGT
TCGTTAGCAGGACGCGCGGAACGATCTTCCCGCAATGTGCGCGGCCCGCT
CGGCCTCGAGCGACAAGCATCACATTTAAAAGGATGCAAGAAGATGCATC
TAAAAAAAGGAGGGCAAGGGCATTTGTCGGCATTTTATACGTTTTGGTAG
CAGTAGCAGCTTCCCTGTCTACGACATACTATAGAAAGTTGTTCTCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7886:5359..7006-

>mRNA_E_fasciculatus_S2_contig7886.16047.1 ID=mRNA_E_fasciculatus_S2_contig7886.16047.1|Name=mRNA_E_fasciculatus_S2_contig7886.16047.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7886:5359..7006- (Ectocarpus fasciculatus EfasUO2)
ATGCATCCTATCTCACAGGCACCTAAATTGGAGCTCTTTCCGCACCCCCT
TGGTTGGGGGGAACTCGAGCTTCGAATGTCGGCAAAGGCGAAGTGCCCTC
TCTCCTCTAAAGTTGAGGTGGATTCGCTGATAGAGATGCTGCCAAACGTG
GTTCTGTCCATCCGGGAAGACAAGTACGAGCACCTCGACACCATGTGGGC
GGACACCGCGAAGGACACGGTGTTCCCGAAGGTGGAGACTTTGGTGCGCC
AAATGTGTCCAACGACGGGAAACGGCGGCCCTACCATCTGGTGA
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