mRNA_E_fasciculatus_S2_contig7880.16041.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7880.16041.1
Unique NamemRNA_E_fasciculatus_S2_contig7880.16041.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7880.16041.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G628_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.060e-44
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 3 
Query:    3 MDVYSFFSEVGEDETQYGHWLLEAVGAGGQQNRDITWDQYLEVVCFFSMFSRREVLRFAFGCLDPGMRGYLDESDFQ 233
            MDVYSFFSE+GEDETQYGHWLL+AVGAGGQQNRDITWDQYLEVVCFFSMFSRREVLRFAFG LDPGMRGYLDESDFQ
Sbjct:  646 MDVYSFFSEIGEDETQYGHWLLQAVGAGGQQNRDITWDQYLEVVCFFSMFSRREVLRFAFGSLDPGMRGYLDESDFQ 722
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7880.16041.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.060e-4496.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7880contigE_fasciculatus_S2_contig7880:2623..3588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size233
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842448.5763946-UTR-E_fasciculatus_S2_contig7880:2622..26241696842448.5763946-UTR-E_fasciculatus_S2_contig7880:2622..2624Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7880 2623..2624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842448.5904653-CDS-E_fasciculatus_S2_contig7880:2624..27501696842448.5904653-CDS-E_fasciculatus_S2_contig7880:2624..2750Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7880 2625..2750 +
1696842448.6126215-CDS-E_fasciculatus_S2_contig7880:3483..35881696842448.6126215-CDS-E_fasciculatus_S2_contig7880:3483..3588Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7880 3484..3588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7880.16041.1prot_E_fasciculatus_S2_contig7880.16041.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7880 2625..3588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7880.16041.1

>prot_E_fasciculatus_S2_contig7880.16041.1 ID=prot_E_fasciculatus_S2_contig7880.16041.1|Name=mRNA_E_fasciculatus_S2_contig7880.16041.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=77bp
MDVYSFFSEVGEDETQYGHWLLEAVGAGGQQNRDITWDQYLEVVCFFSMF
SRREVLRFAFGCLDPGMRGYLDESDFQ
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mRNA from alignment at E_fasciculatus_S2_contig7880:2623..3588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7880.16041.1 ID=mRNA_E_fasciculatus_S2_contig7880.16041.1|Name=mRNA_E_fasciculatus_S2_contig7880.16041.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=966bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7880:2623..3588+ (Ectocarpus fasciculatus EfasUO2)
CGATGGACGTCTACTCCTTCTTTTCGGAGGTTGGAGAGGACGAGACGCAG
TACGGGCACTGGCTGCTCGAGGCGGTCGGGGCGGGAGGGCAGCAGAACCG
TGACATAACGTGGGACCAGTACTTGGAGGTGTGTTGCGGTGCTTCGTGCC
ACAGCCCGTTCCCCATGTTCTTTACACCACATTTTTTTTTTGCTCCAACC
CTTCTATCGAAGCCTCGAGGAAGGCCTTCGCTTCTCCTGCCGTCACCCCT
TCCATTCCACCTCTCCTTCTCCAACCTAACCTCGAGGCAGGCTTTTTTTT
CTCCTTGTAGTATGCGTCGTCGTTTCTAGCCTGTGAGTCAATTTCGAAAC
CCGCCTCTGACAACGGTGAGGCTAGTGCGTGAAAAAGTCCCGGCCGGGTG
TCTCAGAGTTTTTTCGGCGTGACGATGACGACAACAGCAGTGCCATCAAC
AACAACCACGATCAACAACGACAGAAGTACAGCAGGGTGTGGGGGTGTTC
TCGTTCTCGGCCCATGCAAACTTGCGCCACTTTAGGTTGGTGACTGCGAC
AGCAGTGAAGCCAAATGGCGACACGAACTGCGGCATTGCTCGAGCCTTTC
GACCTTTTAGCGTCGTTATTGGTTCTTTTAAGCAGTGCACGCCCCTTGGT
TACGAACGCAGAAAGGCAGCCACAATGTTCTCGGACCTCGAGCAGCACGC
CTGCCCGCGTCCACTCTCACACACGTGACGGTCAATCACCAACCCGTCGG
AATGAACCGGCCAAACCAACCAAATGACACTCAGTCCCAATCAGCACGAG
CGAGGAACCCTACCTTATACCATTCACGGGACGACAACGAATCGGAAAAA
CAAACAAACAGGTGGTGTGCTTCTTTAGCATGTTCAGCCGGCGAGAGGTC
CTCCGCTTCGCGTTCGGCTGCCTCGACCCGGGAATGCGGGGATACCTCGA
CGAGAGCGACTTCCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7880:2623..3588+

>mRNA_E_fasciculatus_S2_contig7880.16041.1 ID=mRNA_E_fasciculatus_S2_contig7880.16041.1|Name=mRNA_E_fasciculatus_S2_contig7880.16041.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=231bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7880:2623..3588+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGTCTACTCCTTCTTTTCGGAGGTTGGAGAGGACGAGACGCAGTA
CGGGCACTGGCTGCTCGAGGCGGTCGGGGCGGGAGGGCAGCAGAACCGTG
ACATAACGTGGGACCAGTACTTGGAGGTGGTGTGCTTCTTTAGCATGTTC
AGCCGGCGAGAGGTCCTCCGCTTCGCGTTCGGCTGCCTCGACCCGGGAAT
GCGGGGATACCTCGACGAGAGCGACTTCCAG
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