mRNA_E_fasciculatus_S2_contig7878.16040.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7878.16040.1
Unique NamemRNA_E_fasciculatus_S2_contig7878.16040.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S4_ECTSI)

HSP 1 Score: 521 bits (1343), Expect = 5.240e-180
Identity = 246/263 (93.54%), Postives = 253/263 (96.20%), Query Frame = 1
Query:    1 WDVECAHSHYRPRVEGCHPTACGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDG---EPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRFEGGARQE 780
            WD+ECAHSHYRPRVEGCHPTACGRFAKHGFLDKPSVRRL+ MAERGMAGCG DVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGG DDG   +PLYSADDYQFYGETIERIRAKVQDLF LGFL FTAPTFITRIQGREGWQPESAHDEYWH+HVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCD+RKEFSSFLDGK+H RF+GG RQE
Sbjct:   85 WDIECAHSHYRPRVEGCHPTACGRFAKHGFLDKPSVRRLIAMAERGMAGCGADVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGEDDGLERQPLYSADDYQFYGETIERIRAKVQDLFGLGFLMFTAPTFITRIQGREGWQPESAHDEYWHVHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDQRKEFSSFLDGKMHRRFDGGPRQE 347          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6I4_9PHAE)

HSP 1 Score: 486 bits (1251), Expect = 8.550e-166
Identity = 229/245 (93.47%), Postives = 236/245 (96.33%), Query Frame = 1
Query:    1 WDVECAHSHYRPRVEGCHPTACGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDG---EPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFS 726
            WDVECAHSHYRP+VEGCHPTACGRFAKHGFLDKPSVRRL+ MAERGMAGCGDDVRSGRSG GGGPCIMDVNSGFVRASGGDIRNIYEG  D+G   +PLYSADDY+FYGETIERIRAKVQDLF LGFLKFTAPTFITRIQGREGWQP+SAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQET+ESPPEMIIEPAPGLLLAFTAGMENPHRAHKVT GTRFVLSFWFTCDKRKEFS
Sbjct:  122 WDVECAHSHYRPKVEGCHPTACGRFAKHGFLDKPSVRRLIAMAERGMAGCGDDVRSGRSGAGGGPCIMDVNSGFVRASGGDIRNIYEGEEDNGLERQPLYSADDYKFYGETIERIRAKVQDLFGLGFLKFTAPTFITRIQGREGWQPKSAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETNESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTTGTRFVLSFWFTCDKRKEFS 366          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH1_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.680e-86
Identity = 145/264 (54.92%), Postives = 176/264 (66.67%), Query Frame = 1
Query:    1 WDVECAHSHYRPRVEGCHPT-----ACGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDGEPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRFEGGARQ 777
            ++V CA  HY P + GCHP      +C R A   F  K  V  L+ MAERGMAG        RS  GG P I+D+N GF+R   G + NIY+G     E LYS D+Y+FYG+ +ERIRA VQ  F L FL FTAPTFITR+ G   W+P+S HDEYWH+HVDK +T HYDYSGLLYLSE GVDFEGGLF      ESPP M+++P PGL+L+F+AG EN H+   VT GTR+ LSFWFTC+  + F +FLDGK H RFEG   +
Sbjct:   84 FNVTCASDHYTPFIPGCHPRPDVPGSCARIAMSEFASKDEVALLIDMAERGMAG--------RSKAGG-PTILDINGGFLRDPQG-VVNIYKGR----ESLYSVDEYRFYGDIVERIRAFVQASFELDFLYFTAPTFITRLVGNSQWKPKSMHDEYWHMHVDKESTDHYDYSGLLYLSEQGVDFEGGLFRM----ESPP-MVVKPTPGLVLSFSAGRENKHQVALVTEGTRYCLSFWFTCNASRRFKTFLDGKAHDRFEGAPAE 328          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTF8_9STRA)

HSP 1 Score: 237 bits (605), Expect = 8.440e-70
Identity = 119/255 (46.67%), Postives = 162/255 (63.53%), Query Frame = 1
Query:    1 WDVECAHSHYRPRVEGCHPTA-CGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDGEPL-YSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRF 759
            W+V C++  Y P ++GCH  + CGR  +  F+ +  V++L  +A+ GM         GRS +GG P IMD+N+G+V+   G + N+Y        P+ ++ + Y  Y + IE+IR  V + F L  L FTAPTF+TR+ G E W P   HDEYWH HVDKNNT HYDYSGLLYL++ GVDF GGLF+F +   +     +EPA G L+ FT+GMEN H   +V  G R+++S WFTCD RK F +FLDGK+H RF
Sbjct:   68 WNVTCSNQ-YNPFIQGCHKRSKCGRALRDNFVSQDVVQQLRDIADHGM--------QGRSTLGG-PTIMDINTGYVKDGNG-LINLYR----QNPPVKFTTEQYTLYRDVIEKIRRAVMEEFQLSSLHFTAPTFLTRLIGNESWTPAELHDEYWHAHVDKNNTAHYDYSGLLYLADYGVDFTGGLFAFIDAKNTT----VEPARGRLMMFTSGMENLHEVRRVETGARYLMSMWFTCDPRKRFHNFLDGKVHDRF 303          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CM13_SAPPC)

HSP 1 Score: 234 bits (597), Expect = 1.350e-68
Identity = 124/261 (47.51%), Postives = 161/261 (61.69%), Query Frame = 1
Query:    1 WDVECAHSHYRPRVEGCHP-TACGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDGEPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRFEGGARQE 780
            W+V C++  Y+P V GCH  T CGR  +  F+    V  L  +A+ GMAG        RS +GG P IMD+N+GFV+ + G + N+Y     D    +S   Y  Y  TIE IR  + + F L  L FTAPTFITRI G   W     HDEYWH HVDKNNT HYDYSGL+YLS+ G+DF GGLF+F + +++      EPA G L+ F +GMEN H+   V  G R+V+S WF+CD+RK+F +FLDGK+H RF  G  +E
Sbjct:   65 WNVSCSNQ-YQPFVRGCHKRTKCGRAVRDAFISDADVTALRGIADHGMAG--------RSMLGG-PTIMDINTGFVKDADG-LTNLYRA---DPPTRFSRSQYDLYKRTIESIRQALMEEFELSTLYFTAPTFITRIIGNASWTAAEIHDEYWHPHVDKNNTWHYDYSGLVYLSDYGIDFTGGLFAFIDDTKNHT---FEPARGRLMMFHSGMENLHQVRPVETGARYVMSMWFSCDERKQFKNFLDGKMHERFTRGDDEE 308          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWV1_9STRA)

HSP 1 Score: 231 bits (590), Expect = 2.010e-67
Identity = 117/255 (45.88%), Postives = 159/255 (62.35%), Query Frame = 1
Query:    1 WDVECAHSHYRPRVEGCHPTA-CGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDGEPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRFE 762
            W+V C+   Y+P V+GCH  A CGR  +  F+    V  L  +A+ GM         GRS +GG P IMD+N+G+V+   G + N+Y     D    ++ + Y  Y + IE IR  + D F L  L FTAPTF+TR+ G   W P+  HDEYWH HVDKNNT HYDYSGLLYL++ GV+F GGLF+F +  ++   + +EPA G L+ FT+GMEN H   +V  G R+++S WFTCD RK F +FLDGK H +++
Sbjct:   80 WNVTCS-KQYQPFVQGCHKRAKCGRALRDNFVSPAVVDALRDIADHGM--------QGRSTLGG-PTIMDINTGYVKDGNG-LINLYR---QDPPVQFTTEQYTLYRDVIESIRLAIMDEFRLATLYFTAPTFLTRLIGNASWVPQEMHDEYWHAHVDKNNTRHYDYSGLLYLADYGVEFTGGLFAFLDKDKN---ITVEPAQGRLMMFTSGMENLHEVRQVETGARYLMSMWFTCDSRKRFHNFLDGKTHDQYD 317          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKR6_9STRA)

HSP 1 Score: 231 bits (589), Expect = 3.910e-67
Identity = 122/244 (50.00%), Postives = 155/244 (63.52%), Query Frame = 1
Query:   40 VEGCHPT--ACGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDGE-PLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRFE 762
            VEGCH    ACGR  + GF+    V +L  +AE GMA         RS +GG P IMDVN+GFV+   G + NIY+        P ++A+ +  Y   IERIR  + + F L FL FTAPTFITR+ G   W P   HDEYWH HVDK+NT HYDYSGL+YLS+ GV+F GGLF+F +      E ++EPA G L+ FTAG EN H+  +V  G RFV+S WF+CD RK+F +FLDGK+H  F+
Sbjct:   98 VEGCHKVGAACGRAVRDGFVTPEEVAQLREIAEIGMAN--------RSRLGG-PTIMDVNTGFVKDGDG-LVNIYQKDRSSPPVPRFTAEQFALYRSVIERIRLALVEEFQLEFLYFTAPTFITRLVGNASWSPTEIHDEYWHPHVDKDNTQHYDYSGLVYLSDYGVEFTGGLFAFLDKGR---EQVVEPARGRLMMFTAGKENLHQVRQVATGERFVMSMWFSCDARKQFRNFLDGKMHQHFK 328          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THM4_9STRA)

HSP 1 Score: 224 bits (572), Expect = 7.740e-65
Identity = 116/254 (45.67%), Postives = 154/254 (60.63%), Query Frame = 1
Query:    1 WDVECAHSHYRPRVEGCHP-TACGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDGEPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRF 759
            W+V C++  Y+P V+GCH  T CGR  K  F+    V  L  +A+ GM         GRS +GG P IMD+N+G+V+   G + N+Y     D    ++   Y  Y +TIE IR  +   F L  L FTAPTF+TR+ G   W P   HDEYWH HVDKNNT HYDYSGLLYL++ GV+F GG+F+F +   +     +EPA G L+ FT+G EN H    V +G R+++S WFTCD RK F +FLDGK+H  +
Sbjct:   76 WNVTCSNQ-YKPFVQGCHKRTKCGRALKDNFVSPAVVDALRGIADHGM--------QGRSTLGG-PTIMDINTGYVKDGNG-LINLYR---QDPPVQFTTAQYTLYRDTIEAIRRAIMHEFQLTTLYFTAPTFLTRLIGNASWTPAELHDEYWHAHVDKNNTHHYDYSGLLYLADYGVEFTGGMFAFLDHHRNTT---VEPARGRLMMFTSGAENVHEVRPVESGARYLMSMWFTCDARKRFHNFLDGKVHEHY 312          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUH4_9STRA)

HSP 1 Score: 226 bits (575), Expect = 7.870e-65
Identity = 130/285 (45.61%), Postives = 161/285 (56.49%), Query Frame = 1
Query:    1 WDVECAH--SHYRPRVEGCHPTA---CGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGG-DIRNIYEGGGDDGEPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGG-LFSFQETS-----------------ESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRFEG--GARQ 777
            W   C+H  +H    + GC P     CGR  + GFL    V  L +MAERGM         G  G   GP IMDVNSG+V  SG     +IY+ G     PLYS  +Y  Y E + R++A+V++ F+L  L FTAPTFITR  G + W   + HDEYWH HVDKNNT HYDYS L+YLS    DFEGG L  F +TS                    PE+ + P  G ++ F +G+ENPHR  KVT+G R+VLS WFTCD+R+E  +FLDGK H  F G  G RQ
Sbjct:   55 WAAPCSHQYAHDDRILPGCTPEVGGDCGRVLEDGFLAPQEVATLKSMAERGMG-------RGAPGQVPGPTIMDVNSGWVLVSGAFQPTSIYQAG-----PLYSEAEYALYREVVGRLKARVEEAFALETLYFTAPTFITREVGSDDWDAGTMHDEYWHPHVDKNNTAHYDYSALVYLSSQDTDFEGGALHFFPQTSLDCAPFVDTVNPGPCLITGDPELEVAPRAGRVIIFGSGLENPHRVTKVTSGVRYVLSLWFTCDRRREMHNFLDGKQHVHFTGDQGQRQ 327          
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV65_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.100e-64
Identity = 118/254 (46.46%), Postives = 152/254 (59.84%), Query Frame = 1
Query:    1 WDVECAHSHYRPRVEGCHPT-ACGRFAKHGFLDKPSVRRLVTMAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGDDGEPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREGWQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSESPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEFSSFLDGKIHSRF 759
            W+V C+   Y P V GCH    CGR  +  F+ +  V  L  +AE GM         GRS +GG P IMD+N+GFV+ + G + N+Y     D    ++   +  Y  TIE IR  + + F L  L FTAPTFITRI G   W     HDEYWH HVDKNNT HYDYSGL+YLS+ G+DF GGLF+F +   +      EPA G L+ F +GMEN H+   V  GTR+V+S WF+CD+RK+F +F DGK+H  F
Sbjct:   54 WNVSCS-KQYEPFVRGCHKRHKCGRAVRDAFISQDDVMALREIAELGM--------QGRSMLGG-PTIMDINTGFVKDANG-LTNLYRA---DPPMKFTKKQFDLYKRTIESIRNALMEEFELAKLYFTAPTFITRIIGNSSWTAAEIHDEYWHPHVDKNNTFHYDYSGLVYLSDYGIDFTGGLFAFIDEKTNHT---FEPARGRLMMFNSGMENLHQVRPVETGTRYVMSMWFSCDERKQFKNFFDGKMHQHF 290          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7878.16040.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Fe2OG5.240e-18093.54dioxygenase domain-containing protein n=1 Tax=Ecto... [more]
Fe2OG8.550e-16693.47dioxygenase domain-containing protein n=1 Tax=Ecto... [more]
Fe2OG2.680e-8654.92dioxygenase domain-containing protein n=1 Tax=Trib... [more]
Fe2OG8.440e-7046.67dioxygenase domain-containing protein n=1 Tax=Apha... [more]
Fe2OG1.350e-6847.51dioxygenase domain-containing protein n=2 Tax=Sapr... [more]
Fe2OG2.010e-6745.88dioxygenase domain-containing protein n=1 Tax=Apha... [more]
Fe2OG3.910e-6750.00dioxygenase domain-containing protein n=1 Tax=Pyth... [more]
Fe2OG7.740e-6545.67dioxygenase domain-containing protein n=2 Tax=Apha... [more]
Hypothetical7.870e-6545.61protein n=2 Tax=Rhizochromulina marina TaxID=10348... [more]
Fe2OG1.100e-6446.46dioxygenase domain-containing protein n=1 Tax=Thra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7878contigE_fasciculatus_S2_contig7878:208..5927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score431.8
Seed ortholog evalue1.9e-118
Seed eggNOG ortholog2880.D7G6S4
Preferred nameOGFOD3
Model size1831
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.L-ascorbic acid binding
EggNOG OGs28IRD@1,2QR2P@2759
Cds size660
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7878.16040.1prot_E_fasciculatus_S2_contig7878.16040.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7878 331..4879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842448.4538949-UTR-E_fasciculatus_S2_contig7878:207..3301696842448.4538949-UTR-E_fasciculatus_S2_contig7878:207..330Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7878 208..330 +
1696842448.5437837-UTR-E_fasciculatus_S2_contig7878:4879..59271696842448.5437837-UTR-E_fasciculatus_S2_contig7878:4879..5927Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7878 4880..5927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842448.466599-CDS-E_fasciculatus_S2_contig7878:330..5151696842448.466599-CDS-E_fasciculatus_S2_contig7878:330..515Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7878 331..515 +
1696842448.487244-CDS-E_fasciculatus_S2_contig7878:975..11221696842448.487244-CDS-E_fasciculatus_S2_contig7878:975..1122Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7878 976..1122 +
1696842448.5016835-CDS-E_fasciculatus_S2_contig7878:2006..20691696842448.5016835-CDS-E_fasciculatus_S2_contig7878:2006..2069Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7878 2007..2069 +
1696842448.5132158-CDS-E_fasciculatus_S2_contig7878:2721..28101696842448.5132158-CDS-E_fasciculatus_S2_contig7878:2721..2810Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7878 2722..2810 +
1696842448.523577-CDS-E_fasciculatus_S2_contig7878:3651..37391696842448.523577-CDS-E_fasciculatus_S2_contig7878:3651..3739Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7878 3652..3739 +
1696842448.5334616-CDS-E_fasciculatus_S2_contig7878:4791..48791696842448.5334616-CDS-E_fasciculatus_S2_contig7878:4791..4879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7878 4792..4879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7878.16040.1

>prot_E_fasciculatus_S2_contig7878.16040.1 ID=prot_E_fasciculatus_S2_contig7878.16040.1|Name=mRNA_E_fasciculatus_S2_contig7878.16040.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=220bp
MAERGMAGCGDDVRSGRSGVGGGPCIMDVNSGFVRASGGDIRNIYEGGGD
DGEPLYSADDYQFYGETIERIRAKVQDLFSLGFLKFTAPTFITRIQGREG
WQPESAHDEYWHLHVDKNNTPHYDYSGLLYLSEAGVDFEGGLFSFQETSE
SPPEMIIEPAPGLLLAFTAGMENPHRAHKVTAGTRFVLSFWFTCDKRKEF
SSFLDGKIHSRFEGGARQE*
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mRNA from alignment at E_fasciculatus_S2_contig7878:208..5927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7878.16040.1 ID=mRNA_E_fasciculatus_S2_contig7878.16040.1|Name=mRNA_E_fasciculatus_S2_contig7878.16040.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5720bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7878:208..5927+ (Ectocarpus fasciculatus EfasUO2)
TGGGACGTAGAGTGCGCCCACTCGCACTACCGACCTAGGGTAGAAGGCTG CCACCCAACAGCCTGCGGACGCTTCGCGAAGCACGGCTTCCTCGACAAGC CGTCGGTGAGGCGCTTGGTGACCATGGCGGAGCGGGGCATGGCGGGCTGC GGGGACGATGTCCGATCCGGCCGAAGCGGCGTGGGCGGCGGTCCGTGCAT CATGGACGTCAACAGCGGCTTCGTTAGGGCCTCGGGCGGGGATATTCGAA ATATTTACGAGGGGGGGGGGGACGACGGGGAGCCTCTGTACTCCGCTGAT GATTATCAGTAAGTGTTGTATGTGTGTATTGGTGCCGTAGGCACTCGAAA AAACTGTGTGCAGTCGCCGGGTGCTGAGTCGCGGTCGACTAGCTGGTGGG GAGTGACTGCGGCGTTCGCGTGTAGAGCAAACGCCCTTCATCCAAAGTTT GCGTGGTTTTTACGCAGCTTTCTGACACCCTCGTATCGCACTCTTTTGGC TGCGTGGCGTGAGCAAACTGCCAAAGTAGGCAAGCCTCTCGTTTTGGCAG CAACATTCACGTGTCACCGCGTCTGGAAGACAAGCTAGGTGGAACATGGC CGAGGTCTGTCGTGTGACCTTTCAACTCCCCGTGTTGGGGGTTTGCTCAA ACGGTGGCGTCACCTCTCGTACAACGTTCGACAGGCTGAACGGGATGATT GCAGACACCGTATCTTTCCATCACTCCCAAGCATGTTTTTTTTTTGTTTG AACTATCGACGGTTCCAGGTTCTACGGAGAAACGATCGAGAGGATCAGGG CCAAGGTTCAAGACTTGTTTAGCCTCGGTTTCCTTAAATTCACCGCTCCG ACTTTCATCACCCGCATCCAGGGGCGAGAAGGGTGGCAGCCCGAATCTGC ACATGACGAGTACTGGTGAGTTTCGCCGTGAGCGAGCGGTTGGCGTCATG TTTCCAGGTTCTATGTTAACAGCATGAGTGTAGGTGAGTAGGTACAATAG TCATATCGGTGTATGCATACGTTCGTGCTGTCCGTTGACGCAATGCTTTG TGAACTGCGCTTCCCACCGTAAACGCTGATGGAGGACGTGATATGTATAC CTGGTGAACGGCAATGAAATAGCCTATCGCCTCCTTTGGAATTGGCGATG CACTGCGAAATTCTTCGGTCTCTCGGTGCCAGGCTAACATGCGAATCAAT CGGTCTCTTGTTCCAACGAATTGTACGTACACCACAAGTCGGGGGATGTA GTCCACTGTGGAAGGTAGGCCCAGTCGAGAGAGACGCTCCTTGCAGGTGT TCCTCGGCCTAGCGCATAGCACACAAAAGCATACCTGGGTAGTGGACATG TCTGGTTTGTTAACTAGCAACATGACGCCGGCCGTGCACGACGATATCGA CCTGTCTCTCCACTCTCGCCAGCATCTGCGCAGCTTGTCGCTCTCGACAT TCTTGACATTCTTGACACTCTGACTGCACCACAAGAGTAACCTCTCCACC CTTCGTCGCTATTTGCCCTGCTACACACGCTTGACACTCGACTGCACCAT GAGACTGATCTCTCCACTCGCGCAGCCGTCTGGTCTGCTTGCAACTCTTG ATGCTGTTGACTGCACCATGAGGTGGACCTCTCCACTCTCGCCGCCATCT GATCGATTGTTGGCATTCTTGTCGCTTTTGCCCCTCTTGCCCCTCTTGAC TGCACCCCAAGATTGACCTCTCCACTCTTGTTGCTATCTGCCCTGCTTGA TGCGCTTGACTGCACCGCACCATCACGCCTCTGCCCCCTTCCGCGAAAGG CACCTCCACGTCGACAAGAACAACACCCCGCACTACGACTACAGCGGCCT CCTCTACCTCAGGTGCTTTTGATCGTACAGCAGAAGAACCTGTGTTGAAT ACTGTCCTTTACTGTACGTGAACACGTTGCCACGCGGCCGCCGCACCGCT TTCTCTCTCTCTCTCTCTTGTGCGTTATGGGACGAATTAGGCGTCGAAAC AGGGAACACGAGACGCCAGGCACGGAATATGAACGTCTTCTTACAATATG AAAGTTCATGTTATTTCGCCTGGAGGCTCGGCCCTTTGTCGCTTATCTTG TCTATGAGGGAACCCAAGAGCGACACGACACACAAGTTTTCGTAATATTT GGTCGGTGACTGAGTTCCTATTCTTAAGTCCGATCACTTCCTTATCTCTT GGTATTTAGGTGAGAATGATGTTAATAACTCCCTCGCTGGTGCTCTGCGT GCTGGCGGGTTGTGTATCCATCACAATCGCACACCTCGTGGTGTTGGTGA CTAGGGTCCCACCTCACCGCACCAGCTGTTCTAGCCACTTTCCCACCTCA TCTCATCTTGCCCCCACACCGGAAGTCGTTCAGGAGAAGAACCTTTCTCC CAGACGTTTCGCAGAGCTGTGTCCTGATAGCCGATACACCCGTGATAGCC TATGTTTGCTCTTGGTGGCCTACTGTACTGACCGCTATCGCTATCGGCCT GTTGGGTTTCGCAGTGAAGCCGGCGTGGACTTCGAGGGGGGTCTGTTTTC CTTCCAAGAAACGAGCGAATCCCCTCCTGAAATGATCATCGAGCCTGCAC CAGGTGCGTGCCCCACCCCCATTCTCGGAAGAGTTACATCGCATGAACGC GGTTAGTACTTCTCTCGTCTGAGGATGGAGATGGAAGCATGCCATGGTCA AACTTAGTAAAAACAGAAAACTCGTGAAACGACTCTCCAGTGTTGTTGCC GTTCTCGAACAAATTGCTGGAGAGTTTAGGGACGACGGAGTGATTGCGGT AGATACGTGAAGGGGGCGGCAGGAAAGACGCTTGAGTGCAATGCTGCTCA ATATTGGTCCGGCATAGTATTGTTCTGGTTCGGTGGCAAGAAGCGGAAGT TCGACGCTTGACTTGCTTTCCACAACAGTTTGCACGCATGGCAGATTCAC AATTGCGCTATACGGAGATGAGCTCGCCCGCGAATCTTTGATCAACATTT GGATTTGTTTTTGTTAGTCTTTTGCGGGTCGGTGCTGTCTGAAACAGATG CTTTCGCGCGACATGAGAACAGACACCAAACTTTACGGGTTTGGGAAAAT GAAAGTTCGGCGCCGTCTCCGATTTTTTTGCACGGAGCACATTCGATGAG GGACATGTCGGTCCTACGCAAAACCAAGAATTTTTCGTGCGATTTAAAAA GTTGGCACCGAAAATTGTTTTTACCGTGTGGGCCGCGAACTCAGCCAATC TCTTTCGTGTACATTGTATCGCGTTTTGGCGTTTTAGTATGTTTGTGTAT GCCCCAGCAATCCCCTCTCCTGGAGCGGGGTCGACTTGTGTTGGTGAATG TACCGGGGATCGTTGTTGTTTTTGTGCATTTTCTCGTCCTGAGTTCTGGT GTGTGTGCTTGCCCGATGTTGACCACTATTATTATACTGGCCAGGTCTCC TGCTGGCCTTCACGGCTGGGATGGAGAACCCACATCGGGCACACAAGGTC ACGGCCGGGACTCGATTCGTGCTTTCCTTCTGGTGAGTGCCTGCCGATCC GTATCGTCGTATTGTATTGTACGAAGTGCCTCTTTCATCGGTATCGCGTG GACGTCGACCTACCTGCTGTACGTTGTACTGTGGGCATTCTGGTATTCAG GACTCTTTATTGTAGTAGTTCTGTTGAACTGCGGACCATGGAAACCCGGC GGGTCGAATTGATCCACCATGACGAAGTTTCGAATGAGACAGTTTCAACA GTTCGGATGAGGACTACAGTAGAACGGCGGCAAGTGTATCACAAGATGGC AGACTGTACGGGCGTCGAGTTAGTTTTTCCTTCTTGTGTAGTTTCGTTTA TAATACTGACCAAGCGTGGTCCGCGAGACGACACTTTGATTACTTTGGTG TTCCTTTGTTGCATCTCATTTGTTCAAGTCTTGAAAAGGACACCCCGTGG TTGGTTGGTGGTTGGTTGGTTTGTTGGATTGAGCTGTGGCTGGCAACCCC GCTGTGTTCGTGTAGTGACCGATTGCACGCAGTGAGCTGTTGTCGTTGTT GTTGTTGCGGCATTCATGTACCCCACGATAGAAAGCAAGCTGCCGATGTC TGACCACCTACATACAGCAGTAGGTCCGTTTTTTTTTGTCTTCCTGACCT GGCCAGCGGTAGCAACGTTGAATGGTTTTCGTTCTCACGTGGAACGCAGG CGCACGACCTGTCGCTATGCTCTTGCCATAGTCTTCGTCTACATAGAACA ATGAGAACATATTCAGCGTGAGCGTTTCAATGATTGCGTCGGTCGTGATT CCTCTTGCCCTCAACGACCCTCAACGATTTGACTAAAGTTCTGCTGTCTC TCAGTTACAAGTAGCCGCCGGCCACAGCAACTCACACTTCCAAACCGCGA TCCACACGGCACATGCATGCTGGCGTCCATGTCCCTGTCCTCTCATCCTC TCTTTCCCCTGCTCGCAACACCAAGATTTGTGCGTGATATTCGCCGTGTC GTGGCGAGCGCCGTTCGCTGAGCCCAGCTCGCTACCCTGCTTTCCTCTTC TCTCTTCGCTTGTGTTGTGGTTTTATCTGTGCAGGTTCACGTGCGACAAG AGAAAAGAGTTCTCCTCATTTCTGGACGGAAAGATTCACAGCCGCTTCGA GGGTGGTGCCAGACAAGAATGAAATGAATGAATGAATCATCGTCACATGG AAGGGGGTTCTGACATACCTCGCGAAAATCTTGCAGGAGAATGCAGTTAT GAATGAAGCAGGAGATCGAAGGTAGTCCCGCTTTCCGTATACAGTCGGTT GTGATGTGCTATGTAGTTGGTATAGTTGCAGTGTGAAGTAGGGCGGATGG CTTTCTATGATATTTTTCTCACCTCGTGCGCAAAGAGTGAATGCTGTGAA TCATATGTTGTGCCCAAAGCAAAACAATGATGAGGGGGAATGGTATCGCC GCAGCGGCCAGAGGGAGGCGTGTTGTGAGTCTTGTCGTTTTTTTAATTGT TCCCGGATTGTTTTCTAAGAGTTGTTGGGTCTATGCATACACAACGCGTT TCGATGCCTTTGCCATGTAAAGGGATTGCTTTGAAGGCGTTTTTGTTGCA TGTCTTGTCGGAGAACAAGTGGTGCAGGCTGTTTGCCCCAACGGACAGAC AGACGTGGGCACCATGTTTTGAATTGAAGTGACTCTTCGATGCCCCGACA TGGCATCAGAGAGCAGCATGGGTGACGTGTTAATTGTGCCATTTTTAGAG CGCGCATATTTGCGAATCTTAGCATTAACCTCGATAACACCTGTGGAGGC ATGACGGCATGCCAGGGGACAGTACACGATCTACCTTGTACCGAAGCCCG GCAGCAGGCCTCAGGGTCCGCATTAGCTGCCGTATGTGTCTTTCGTTCGT TGGTTTTTGTGCTGGACGGCGGTGACAAAGTGGTGCCGTTGGCATTTACA ACTTGACCCGTTGTTTTTCCGGGGTGCATCTATGATGAAACCACCCAAAG TATGCATAGCAGCATTTGTATTGCTCAGGCGATCAACTCGACTGATGCTT AGACGGAACTAGCTCCTAGTGCTCTCCTTTTCCCGACTGTGTTACTGTCC ACACACGAAATGATCGCCAGAAACTTGCTCGACGTACACTTGCCGACCTT GTTTTGAGTGTTGGCGAGCGTACGCCGCTAGTGACGCTGGCGGGCTCTCG TCGAGAGCGCCTTGCACGGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7878:208..5927+

>mRNA_E_fasciculatus_S2_contig7878.16040.1 ID=mRNA_E_fasciculatus_S2_contig7878.16040.1|Name=mRNA_E_fasciculatus_S2_contig7878.16040.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=660bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7878:208..5927+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAGCGGGGCATGGCGGGCTGCGGGGACGATGTCCGATCCGGCCG
AAGCGGCGTGGGCGGCGGTCCGTGCATCATGGACGTCAACAGCGGCTTCG
TTAGGGCCTCGGGCGGGGATATTCGAAATATTTACGAGGGGGGGGGGGAC
GACGGGGAGCCTCTGTACTCCGCTGATGATTATCAGTTCTACGGAGAAAC
GATCGAGAGGATCAGGGCCAAGGTTCAAGACTTGTTTAGCCTCGGTTTCC
TTAAATTCACCGCTCCGACTTTCATCACCCGCATCCAGGGGCGAGAAGGG
TGGCAGCCCGAATCTGCACATGACGAGTACTGGCACCTCCACGTCGACAA
GAACAACACCCCGCACTACGACTACAGCGGCCTCCTCTACCTCAGTGAAG
CCGGCGTGGACTTCGAGGGGGGTCTGTTTTCCTTCCAAGAAACGAGCGAA
TCCCCTCCTGAAATGATCATCGAGCCTGCACCAGGTCTCCTGCTGGCCTT
CACGGCTGGGATGGAGAACCCACATCGGGCACACAAGGTCACGGCCGGGA
CTCGATTCGTGCTTTCCTTCTGGTTCACGTGCGACAAGAGAAAAGAGTTC
TCCTCATTTCTGGACGGAAAGATTCACAGCCGCTTCGAGGGTGGTGCCAG
ACAAGAATGA
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