mRNA_E_fasciculatus_S2_contig7861.16027.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7861.16027.1
Unique NamemRNA_E_fasciculatus_S2_contig7861.16027.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 1.800e-126
Identity = 186/191 (97.38%), Postives = 189/191 (98.95%), Query Frame = 1 
Query:  244 MFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 816
            MFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESE+LDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCL+FA VEQKLGE+DRARAV TYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV
Sbjct:    1 MFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESERLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLSFAAVEQKLGEIDRARAVWTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 191
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 343 bits (879), Expect = 4.510e-108
Identity = 159/266 (59.77%), Postives = 219/266 (82.33%), Query Frame = 1 
Query:   13 SRPQVPVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            S+ ++PVQER+ +S RVW  YLDLEESLGTV T +AAY+R  EL++A+ Q++LN+A+FLEENKYFE++F V+EKGV+ F +P+VK +W +YL+RF++RY G KLERARDLFEQA++  P   + +L+++YAKLEE HGL+RHA +V DRA  AVEE+++ DM+ LY+ K ES+YGVT+TRQ+YE+AIK L +  A++M + +ATVE+KLGE+DRARA+ T+GSQF +P+R   +W+ WH+FEVAHGNE+TFREMLR K SVQ +F+
Sbjct:  496 SKTEIPVQERLHKSVRVWTFYLDLEESLGTVDTTRAAYDRVLELRIATPQVILNYAAFLEENKYFEESFTVFEKGVAAFRWPHVKALWHQYLDRFIKRYAGDKLERARDLFEQALKDCPADTSAELFLKYAKLEEQHGLVRHAMAVYDRAVQAVEEAQRFDMYMLYIRKAESFYGVTRTRQIYEQAIKLLPDVDAQKMAVQYATVEKKLGEIDRARAIFTHGSQFTNPKREPEFWKQWHDFEVAHGNEDTFREMLRVKRSVQTAFA 761
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AIS7_9STRA)

HSP 1 Score: 309 bits (792), Expect = 2.180e-101
Identity = 144/262 (54.96%), Postives = 207/262 (79.01%), Query Frame = 1 
Query:   25 VPVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            +PV+ER+ +S +VW LYLDLEESLGT +T +AAY+R  EL++A+ Q++LN+A+FL E+ Y+E +F V+E+G+ +F +P+VKP+W  YL+ F  RYGGSKLERAR+L EQA+ K P + + +LYI+YAKLEE HGL+RHA ++ DRAC  V+   K DM+ LY+ K ES+YGVT+TR++YE +I  L +  A++M L +A +E+KLGEVDRAR + T+G+Q ++P+R   YW+AWH+FEVAHGNE+TF++MLR K SV +S++
Sbjct:   82 IPVKERIHKSVKVWTLYLDLEESLGTHETCQAAYDRVLELRIATPQIILNYAAFLSESHYYEASFTVFERGIHIFKWPHVKPLWHAYLDAFTARYGGSKLERARELMEQALSKAPAEASTELYIKYAKLEEDHGLVRHAMAIYDRACKHVKN--KKDMYLLYIKKAESFYGVTRTREIYEASIAALPDNLAQKMSLEYAGMERKLGEVDRARGIFTHGAQLSNPKREPGYWKAWHDFEVAHGNEDTFKDMLRVKRSVSVSYA 341
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Pre-mRNA (splicing factor Syf-1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GLH5_9FUNG)

HSP 1 Score: 323 bits (829), Expect = 4.630e-101
Identity = 146/262 (55.73%), Postives = 206/262 (78.63%), Query Frame = 1 
Query:   25 VPVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            +PVQ RV++S R+W+ Y+DLEES+GT+ + KA Y++  ELK+A+ Q+++N+A+FLEENK+FED+++VYE+G+ +F +P    +W  YL +F+ RYGG+KLERARDLFEQA++K+P K A  LY+ Y +LEETHGL RHA S+ DRA  AV   ++ DM+  Y+AK  + +GVT TR++YE+AI+ L ++ AR MC+ FA +E+KLGE+DRAR +  +GSQF+DPR A  YWQAWH+FEV HGNE+TF+EMLR K SVQ+ F+
Sbjct:  557 LPVQIRVYKSLRLWSFYVDLEESIGTIDSTKAVYDKILELKIANPQIIVNYANFLEENKFFEDSYKVYERGIDLFGYPIAFELWNTYLLKFINRYGGTKLERARDLFEQALDKMPAKYAKPLYLMYGELEETHGLARHAMSIYDRATKAVASEDRADMYHFYIAKAATMFGVTSTREIYERAIETLPDKDARMMCMRFAEMERKLGEIDRARGIFAHGSQFSDPRIASDYWQAWHDFEVQHGNEDTFKEMLRIKRSVQVKFN 818
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Pre-mRNA-splicing (factor syf1 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KJQ7_9FUNG)

HSP 1 Score: 321 bits (822), Expect = 8.830e-101
Identity = 144/262 (54.96%), Postives = 203/262 (77.48%), Query Frame = 1 
Query:   25 VPVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            +PVQ RV++S R+W+ Y+DLEES+GTV++ KA Y++  E+K+A+ Q+++N+A+FLEENK+FED+++VYE+G+ +F +P    +W  YL +F+ERYGG+KLER RDLFEQA+EKVP K A  LY+ Y  LEETHGL RHA S+ DRA   V   ++ DM+  Y+AK  + +GVT TR++YE+AI+ L ++ AR MC+ +A +E+KLGE+DRAR +  +GSQF DPR  + YWQ WH+FEV HGNE+TF+EMLR K SVQ+ F+
Sbjct:  475 LPVQVRVYKSLRLWSFYVDLEESVGTVESTKAVYDKILEIKIANPQIIVNYANFLEENKFFEDSYKVYERGIDLFGYPIAFELWNIYLLKFIERYGGTKLERTRDLFEQAIEKVPAKHAKPLYLMYGNLEETHGLARHAMSIYDRATKVVAPEDRADMYHFYIAKAATMFGVTSTREIYERAIEVLQDKDARVMCMRYADMERKLGEIDRARGIYAHGSQFCDPRITQDYWQTWHDFEVQHGNEDTFKEMLRIKRSVQVKFN 736
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UVN0_9GLOM)

HSP 1 Score: 315 bits (807), Expect = 6.050e-99
Identity = 145/262 (55.34%), Postives = 202/262 (77.10%), Query Frame = 1 
Query:   25 VPVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            +PVQ RVF+S ++W+ Y+DLEES+GTV++ KA Y+R  ELK+A+ Q+++N+A+FLEENKY+E++F+VYE+GV +F++P    IW  YL +F+ERY GSKLERARDLFEQA+EK P K A  LY+ Y KLEE +GL RHA  + DRA  AV + ++ +MF  Y+AK  + +GVT TR +YE+AI+ L ++ A++MCL +A +E+KLGE+DRARA+  + SQF DPR    +WQ WH+FEV HGNE+TF+EMLR K SVQ  ++
Sbjct:  478 IPVQRRVFKSIKLWSFYVDLEESIGTVESTKAVYDRILELKIATPQIIINYANFLEENKYYEESFKVYERGVELFNYPIAFEIWNVYLTKFIERYSGSKLERARDLFEQALEKCPPKYAKSLYLMYGKLEEDYGLARHAMRIYDRATRAVSDEDRFEMFNFYIAKAGANFGVTYTRDIYERAIEVLPDKEAKDMCLKYAELERKLGEIDRARALYAHASQFCDPRTVPSFWQTWHDFEVKHGNEDTFKEMLRIKRSVQAQYN 739
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BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YYM0_9FUNG)

HSP 1 Score: 306 bits (784), Expect = 9.760e-99
Identity = 139/262 (53.05%), Postives = 200/262 (76.34%), Query Frame = 1 
Query:   25 VPVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            VPVQ RVF++ R+W+ Y+DLEES+GTV++ +A Y+R F+L++A+ Q+V+N+A++LE++ YFE+ F+VYE+G+++F +P    +W  YL +FV RYGGSKLERARDLFEQA+E  P K A  LY+ Y +LEE HGL ++A  + DRA  AV + ++++M++ Y+AKV   +GV  TR +YE+AI  L +  A++MC+AFA +E+KLGE+DRARA+  Y S   DPR +  +WQ WHEFEV HGNE+TF+EMLR K SVQ+ F+
Sbjct:  203 VPVQRRVFKALRLWSFYVDLEESIGTVESTRAVYDRIFQLRIATPQIVVNYAAYLEDHHYFEEGFKVYERGIALFGYPVAFELWNIYLTKFVSRYGGSKLERARDLFEQALENCPAKHAKPLYLLYGQLEEEHGLAKNAMRIYDRATGAVAKEDRMEMYKFYIAKVSQTFGVAATRDIYERAISALPDREAKDMCVAFADLERKLGEIDRARAIYAYASALCDPRVSSNFWQQWHEFEVKHGNEDTFKEMLRIKRSVQLQFN 464
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Uncharacterized (protein n=6 Tax=Scleractinia TaxID=6125 RepID=A0A3M6TIW2_POCDA)

HSP 1 Score: 314 bits (805), Expect = 1.420e-98
Identity = 147/260 (56.54%), Postives = 199/260 (76.54%), Query Frame = 1 
Query:   31 VQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            VQ+RV++S ++W++Y DLEESLGT Q+ KA Y R  +L++A+ Q+++NF +FLEE++YFE+AF++YE+GVSMF +PNV  IW  YL +F++RYGG+KLERARDLFEQ +E  P K A   Y+ YAKLEE HGL RHA S+ +R+  AV   E+ +MF LY+ +    +GVT TR++YEKAI+ L +E AREMC+ FA +E+KLGE+DRARA+  + SQ ADPR    +W+ WH+FEV HGNE+TFREMLR K SVQ  F+
Sbjct:  457 VQKRVYKSLKLWSMYADLEESLGTFQSTKAVYNRILDLRIATPQIIINFGTFLEEHRYFEEAFKIYERGVSMFKWPNVFDIWNTYLTKFIQRYGGAKLERARDLFEQVLEGCPAKFAKSFYLLYAKLEENHGLARHAMSIYERSTKAVLPEEQFEMFNLYIKQAAEIFGVTHTREIYEKAIEVLPDEQAREMCIRFADLERKLGEIDRARAIYMHSSQMADPRTTPTFWKVWHDFEVRHGNEDTFREMLRIKRSVQAQFN 716
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: XPA-binding (protein n=1 Tax=Fasciola gigantica TaxID=46835 RepID=A0A504YEG0_FASGI)

HSP 1 Score: 303 bits (777), Expect = 2.040e-98
Identity = 145/261 (55.56%), Postives = 195/261 (74.71%), Query Frame = 1 
Query:   28 PVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            PVQ R+ +S ++W LY DLEESLGT +T KAAY+R  +L++A+ Q+++N+A FLEE  YFE+AF+ YEKGV++F +PNV  IW  YL +F+ERYGG+KLERARDLFEQ +EK P K A  LY+ YA+LEE HGL R A  + +RA  AV + E+ +MF +Y+ ++   +GVT TR  YE+AI+ L E+ AR+MCL FA +E+KLGE+DRARA+  Y +Q  DPR    +WQ W EFEVAHGNE+T REMLR + SVQ +++
Sbjct:   34 PVQARLHKSLKLWTLYTDLEESLGTFETTKAAYDRMIDLRIATPQIIMNYALFLEELNYFEEAFKAYEKGVALFRWPNVYDIWAAYLAKFMERYGGTKLERARDLFEQCLEKCPAKYAKALYLLYARLEEQHGLARRAIRIYERATEAVLQDERFEMFNIYIQRIADLHGVTHTRPAYEQAIERLPEQHARQMCLRFADLERKLGEIDRARAIYAYCAQMCDPRTEVQFWQTWKEFEVAHGNEDTLREMLRIRRSVQATYN 294
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XWD3_9FUNG)

HSP 1 Score: 314 bits (805), Expect = 2.920e-98
Identity = 140/262 (53.44%), Postives = 204/262 (77.86%), Query Frame = 1 
Query:   25 VPVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKVASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFVERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASVLDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAREMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHGNEETFREMLRTKLSVQMSFS 810
            VPVQ R+F+S R+W+ Y+DLEES+GT+++A+A Y+R  +L++A+ Q+++N+A+FLEE++YFE++F+VYE+G+ +F +P    +W  YL +F+ RYGG KLERARDLFEQA+EK P K A  LY+ Y +LEE HGL ++A  + DRA  AV   ++L+M+R Y+AKV   +GVT TR++Y++AI+ L++  A++MCL+FA +E+KLGE+DRARA+  Y S F DPR    +WQ WH+FEV HGNE+TF+EMLR K SVQ+ F+
Sbjct:  491 VPVQRRIFKSLRLWSFYVDLEESIGTIESARAVYDRILQLRIATPQIIVNYAAFLEEHQYFEESFKVYERGIGLFGYPVAFELWNIYLSKFIARYGGQKLERARDLFEQALEKCPAKHAKPLYLLYGRLEEEHGLAKNAMRIYDRATGAVTAEDRLEMYRFYIAKVGQTFGVTATREIYQRAIEALSDRDAKDMCLSFAEMERKLGEIDRARAIYAYASAFCDPRTVPSFWQQWHDFEVKHGNEDTFKEMLRIKRSVQLQFN 752
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7861.16027.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.800e-12697.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Glycine--tRNA4.510e-10859.77ligase n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
Hypothetical2.180e-10154.96protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Pre-mRNA4.630e-10155.73splicing factor Syf-1 n=1 Tax=Lobosporangium trans... [more]
Pre-mRNA-splicing8.830e-10154.96factor syf1 n=1 Tax=Linnemannia elongata AG-77 Tax... [more]
Pre-mRNA-splicing6.050e-9955.34factor SYF1 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A... [more]
Uncharacterized9.760e-9953.05protein (Fragment) n=1 Tax=Syncephalis pseudoplumi... [more]
Uncharacterized1.420e-9856.54protein n=6 Tax=Scleractinia TaxID=6125 RepID=A0A3... [more]
XPA-binding2.040e-9855.56protein n=1 Tax=Fasciola gigantica TaxID=46835 Rep... [more]
Pre-mRNA-splicing2.920e-9853.44factor SYF1 n=1 Tax=Thamnocephalis sphaerospora Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7861contigE_fasciculatus_S2_contig7861:231..6489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score380.9
Seed ortholog evalue4.8e-103
Seed eggNOG ortholog2880.D7G3C7
Model size816
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
Exons7
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-21_002830.1
Cds size816
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7861.16027.1prot_E_fasciculatus_S2_contig7861.16027.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7861 231..6489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842447.1938047-CDS-E_fasciculatus_S2_contig7861:230..3711696842447.1938047-CDS-E_fasciculatus_S2_contig7861:230..371Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7861 231..371 +
1696842447.2087457-CDS-E_fasciculatus_S2_contig7861:1483..15761696842447.2087457-CDS-E_fasciculatus_S2_contig7861:1483..1576Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7861 1484..1576 +
1696842447.2197864-CDS-E_fasciculatus_S2_contig7861:2876..29931696842447.2197864-CDS-E_fasciculatus_S2_contig7861:2876..2993Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7861 2877..2993 +
1696842447.2310603-CDS-E_fasciculatus_S2_contig7861:3632..38001696842447.2310603-CDS-E_fasciculatus_S2_contig7861:3632..3800Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7861 3633..3800 +
1696842447.2413285-CDS-E_fasciculatus_S2_contig7861:4434..45181696842447.2413285-CDS-E_fasciculatus_S2_contig7861:4434..4518Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7861 4435..4518 +
1696842447.2508032-CDS-E_fasciculatus_S2_contig7861:5276..53931696842447.2508032-CDS-E_fasciculatus_S2_contig7861:5276..5393Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7861 5277..5393 +
1696842447.2621968-CDS-E_fasciculatus_S2_contig7861:6393..64891696842447.2621968-CDS-E_fasciculatus_S2_contig7861:6393..6489Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7861 6394..6489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7861.16027.1

>prot_E_fasciculatus_S2_contig7861.16027.1 ID=prot_E_fasciculatus_S2_contig7861.16027.1|Name=mRNA_E_fasciculatus_S2_contig7861.16027.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=272bp
KKQTSRPQVPVQERVFRSTRVWNLYLDLEESLGTVQTAKAAYERAFELKV
ASAQMVLNFASFLEENKYFEDAFRVYEKGVSMFSFPNVKPIWIRYLERFV
ERYGGSKLERARDLFEQAVEKVPEKDAGDLYIRYAKLEETHGLMRHAASV
LDRACAAVEESEKLDMFRLYVAKVESWYGVTQTRQVYEKAIKDLNEEGAR
EMCLAFATVEQKLGEVDRARAVLTYGSQFADPRRAEPYWQAWHEFEVAHG
NEETFREMLRTKLSVQMSFSQV
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mRNA from alignment at E_fasciculatus_S2_contig7861:231..6489+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7861.16027.1 ID=mRNA_E_fasciculatus_S2_contig7861.16027.1|Name=mRNA_E_fasciculatus_S2_contig7861.16027.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6259bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7861:231..6489+ (Ectocarpus fasciculatus EfasUO2)
AAAAAACAAACATCCCGACCGCAGGTGCCTGTTCAGGAGCGCGTGTTCCG
CAGCACGCGCGTGTGGAATCTGTACCTAGACCTGGAGGAGTCCCTGGGCA
CCGTGCAGACCGCTAAGGCCGCGTACGAGCGGGCATTTGAGGTGTGTGCG
GGTGTGTGTGTTTTCTTGGTTAGCATCGACCGCGCTAACCGGCTGACCAA
GGAGAATACGTCCGTCTATTACAGTAGCGGAATATAAAACGAAATATAAA
ACTAGCAATTTTAATCAAAAGATACAAATAATCAGTGTATAGGCTTAAAA
ACGACTCAAAGTAAGCCCACTACCCCGTCGGTTTTTTACCATTCATTGTA
AAGACTTCAACACATCCCCTTCGACTGTGGCTTTTTCTCGAACGGGTAGT
CTTTCGGTGTTTGTGTTTGTATTTTGTCTTTAAAAGAGGTGTGTGGGTTG
TGTGTGTGTGTGTGTGTTTTCGACCGCGCGAACCGACCAACCAATGAAAA
GATGACATCATTGTAGCGGATAAAACCACGAACAGTTTCTCATCAAAGAG
GTGTGTGTTTAGGCCCCCCACGACTTGGCACGGGATGATGGGAGGATTAG
CAGCGACGGTGGGTTGACGGTGTGAGACAAGGTGGCTGGTAGAGCGTTGG
TGGTAGTGATGGTGGTGGTGGCTACTGTTTGTCGTCTCTGAGTCTGACAA
ACGAGTTTTTCTAACGACGATGCGATGCCTAACTCGGAGCGTGTCACGGT
GGCGGCACATGCTCGAGTTTTGGTGGTGGTGTTGATGTTGGTGTTGTTGT
TGCTGCTGTATTTTCGTTGAAAACCATTTGCCCGGTACCTGTTGATGTTC
TTATTGTGTCATTGTTGTCTGTTCAACTGGCGCTTTTCACACGCGAAATG
TGGGAAGGCAGAAACTGCTGGTTTCGGCAGAGTGGGAGTAGGGGCAGTCT
CCCCCCTATTTTTGTTGCTGTTGACGTGCCCTTAGTTGGCTACTTATGTC
CGCGGTTCGCAATGTTGGCACCTCTTGGGTATCACAGCTAACGGCGTTAA
ACTCGCAACAACAATTAATCCCTTGTCCAAGGACAGCGCCAGTTAATGAA
ACTTGTTCCATTGCATCTAGTGGCGCGAGCTCGTAACAATGATTCGCACA
AACAAGGACAGCAGCAGGTGTAACGAGACCTTGGTTGCGTCGACTTGATT
TTTGATGCTGTCCTTTTTCTTTTTTGCCGTGATGACGAACGTAACGAACG
CAGCTCAAGGTGGCGTCGGCTCAGATGGTGCTCAACTTCGCTTCTTTCCT
GGAAGAGAACAAGTACTTCGAGGACGCATTCAGAGTCTACGAGAAGGTGA
AGATGTTTACTTGACTTGACGTTTACGTGACTTTTACGTGACTTGACTTT
GACTTTACTTTACTTTACTTTACTTTACTTTACTTTACTTTACTTTACTT
TACTTTACTTTACTTTACTTTACTTTACTTTACTTTACTTTACTTTACTT
TACTTTACTTTACTTTACTTGATTTGACTTGACTTGACTTGACTTGACTT
GATTTGATTTGACTTGACTTGACTTGATTTGACTTGATTTGACTTGTGGG
TTGTACTCATCGCCGTGCATGCGGTACAGTAGTCGTTAGACCATTGACCT
CGTATCCCTACAAAGCCGGGACCGAGCACGACGGGTCTTCACCGGACCAG
GCTACGTATGACAATATATTAGCACATCACCAAGCGCGAATCACCGTGAG
GGAGGGGGGGGGGGTACTCATGCTCTTGCTCTTGCTCTTGCATGCCTTGG
CGGTTAAACGGTTGACCACGCGTCCTCTCGAGAGGACAGGGCATCGTCAC
ACTCATGTTTATTGCAGGCGGGGGGGGGCATTCATTGCCTTCGGTCTGTC
TCTTGCCTTCGCCGAGTGACAGTCTCGACAAGGCGGCTGTTCTCCGGCTC
GTGTTCAGTTTTGTCGGTAGCCTCTGCTCATGTCATGTCATGTAACGCCG
ACCACGAATCATTTTTTTTTACGAAAAACAGACTGCTGTGAGAATGCACA
GAACGTTGAAGAAAGACGAAACGCGTGAGTTCAGCCCGTTAGCTTTGGCG
AAGGGGATTGCGGATACATGCATGATAAAAGTTGTACTTTTCCGCTGGAG
AAAACGGGAGAGCTGGCTGTCAAGAGTTTTTTTACCCACCTCGTTGGAAT
CGAAACTTGAGAGAATGGTACCATCCAAAAGCTGAGTACCCCACAAGAAA
TATACTCTTGCGCAGTACAGCAGTACACGCTCGATCCTTAGGGGTTTGCG
AAAATATCCAATTTCGGCGTGAGAAACGCGTAGCCCGGCGTGTAGCGAGA
CCTTTGCTGTACGGGGTCCCTTTTTTTGTTTGTTTTAGGGTATCGGAAAA
TCCTTGGCAAACGTGGGGTGAAGTTTTCGTTCTGGCCCAGTGAGACAGAC
GTGCAGGGTCAGTCTACGGTTGCTCTCGATGAATCGACCGCTCTTCGCGC
GAGTATCGGGCTCCTATGTTTGCATATCAAACAAGCCTTGCTTGTCGGTG
TGTGTCCCTTTCTCCCGGCGATCGCTTTTGCAACGACTTCTCCAACATCG
TAAATTACAACCCTCCACACGTGCTGGACGCCAACAATATATGCAGGGCG
TGAGCATGTTCTCCTTCCCCAACGTGAAGCCCATCTGGATCCGTTACCTG
GAACGGTTCGTGGAGCGCTACGGGGGTTCCAAGCTGGAGAGGGCGCGAGA
CTTGTTCGAGCAGGTGTGCGGCATGCTTGGGCACGTTCTGGATGTGTGTG
TGGTGCGGTATCATACTCGAAAGCACAAGGACCTTTTTTTGTGGATTGTG
GGTGTGTGGTGCGGTAAACAAGGTACTAATGCACAAGATATTTTTTAGTA
GGTTGTGTGTGTGTGGTGTGGTGTTATTCTCAAAAGCAGAAGCACAATTT
TATGGTTTGTGTCTGTGCGAGGTGCGGTATACCAAATATACTCTCGAAAC
CACAAGAACCTCTTGAGAGATTTGTGTGGTGCGGAACACCGAGTAAACTC
GAGAACACAATATCTTTTTTTTTGTGGGGTTGTATTTTTGCCTTCCTTGT
TGCGGGTGTTATTTGTTTCGCTTTTTTCGTCTCTGCCGTTCTCGTTCAAA
TGTCATCGTACGCATGAGAGAGGAACCGCTTTTTTTTTTCTTCGATGGCT
TCTTCCTTCCGTCCTTCGTATTGTTACATTTGCTTTTTGTAGTCTCAGGC
AGTGGAGAAAGTCCGTACGCGTGAGAGGGGGTACATGTTCCACTTTGATT
TTATTATATTTCTTTCCTTCCCTCCTTCCTTCCTTCCTTCCTTATTTATT
TATTTGTTTGTTTATTTATTTATTTATTTTTTGCTTTTTTTTATCGTCTT
AGGCTGTGGAGAAGGTCCCCGAGAAGGACGCCGGGGACCTGTACATCCGC
TACGCCAAGCTCGAGGAGACGCACGGCCTCATGCGCCACGCGGCCTCGGT
GTTGGACCGCGCGTGCGCCGCCGTGGAGGAATCGGAGAAGCTAGACATGT
TCCGCCTCTACGTTGCAAAGGTACGAAAATAGGGTATGAAGGGATCAAAA
TATCTAGCACGTTGCCAAGGTACCGTAGAGGGTACAAGGAACGTTACCAA
GGTACAAAAAAAAAAGGTTTGAAGGGTACCAGGTATGCCGCAGTTTTTCT
TGTCTGCCCACGAGGGTTCTGAAGCTGTAGGTTTTGGGCAGTCAGTCACG
TTTTGTTTTTGCTGTGTTGTTGGCCTACGATTAACTAAGTCACACCAGCA
GCAGCACCCAGTGTTCGTTCTGTGGCAGCTGCTCAGGGCAGCGAACACCA
CGCATCTAACTGTTTCGACGAAACGAAATGTTTAGTTGGATGATGCGAAA
ACATCAAGGCGTTCGATAGGTTTTGGTGACGTAGATACGGCTTCGTCCGA
TGGTTTTGGTGTTTTCGGGGATCCAGCTTAGGGCTTGTGGCAAAGGTTAA
AGTTTGTTTCTGAGACAATGATTCCATGGAGGCGGGTTGACGAATTGTTC
TCTTCTTTGCCCTCCATTATCCGCTCTGTCTGCTTCTGTATCTAGCTCTC
CCTCTGTGCATGACTAGCTCTCTCTCGCTTGCCCTCTGTGTCCCCTCTTG
TTTCATTAACGCGGCATGTGTGATGTTGTTGTTCTCATCCTTATCCTTAT
CCAGGTGGAGTCGTGGTACGGCGTCACCCAAACCCGGCAGGTGTACGAGA
AGGCCATCAAGGATCTCAACGAGGAGGGGGCTAGGGAGGTGAGACAGACA
GACACACACAGAGGAAAGGAACACGGGCAGACACAACACACAGACACACA
GACAGACGACGCACGAAGACATAGGGTAGGTAGGTAGGTAGACAGACACA
GACAGACGACACACGAGACTTTGGTAGGTAGATAGGGGACACAGGCAGTC
ACAGACACATGTAGAGACGACCGGCGGGCAGATAGACCGCCAGTCACGAC
ACATGTAGAGACGACAGATGGGTAGATAGATGGACCGACACATCACCTGG
TGCGTACATAAACGCGTGTGGGGAATTCGGAGTACTTGGCAGACAACGAG
TCCAGGGCGGAGAGAGGGGGACAGGAGCCGAAACGTGCATTAGTGCCAAT
CGCGGTCGTGCACATGCATGCGATGTGTACGCTGCGCTTCCCCTCTCGAC
CGTGAGACTCCCCCCTGTACCCTTTTTTTGGTGTTGTGGTGGTCGTGGTT
TGTGCCTGCTGCTGTAGACGTGCGTGTGGTGGCTGGACTGGAGTGATGAT
GACCGCGTGTTCGAACGTTGCTCTTTTTCTCTCCCTGTGGTCGTCTGGTC
TTTAGTCGTCCAAACCTTGTTGGGATGTAAATTTGTCAACACGTTTTCTC
GTCCGGCAGTTGCCCTTCAACAGTTCCTCCTCTGGCCGTGCCTTTTTTAT
TTTTGTTCTCCACGCAAGGCGCTTTCCCTTCTAATTTTGTTGTTGTGTTT
CCTTCTCCCTCGGTCGCCGTTGGTTGTTGACACCGACCGTGTGCAGATGT
GCTTGGCGTTCGCGACGGTGGAGCAGAAGCTGGGAGAGGTGGACAGGGCC
AGGGCCGTCTTGACCTACGGCAGCCAGTTCGCGGACCCGAGGAGGGCCGA
GCCCTACTGGCAGGTAAAGCGAGCAAGCAAGCACTGCTCTCATTTTCTTG
CATTATTGGCAGGCAGGTAAAGCGAGCAAGCAAGCACTTCTCTCATGTTC
TTGCACTATTGGCAGGCGGGCAAAACGAGCACTGGTCTCTTCGTGAGCGA
ATAATTCGCTGCTGGTGTGTGTTAAACTCCGCTCGGTGTTGGTGCGTGTG
CGTCTCAATTAGTAGTAGCAGTAAATAGTGTAGTTGTAGTAGTATCGTCG
GCGCTAGCCGACTGACCTATTAAAATACGTCCGTCTCAGTCTCAGTCTCA
GTGCGGTTGAAAATGCATGAATCGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTTTTTGTTTTCTCGTACACCTGGTGCTGTTGGAAGTGGTGGTGG
TGGTGTCTGGTGATGGAAGCGTTGCCGTGATCCTTGTGGGAGGGAGTGCT
ATCGTTCGTCGTCCTTGGCGGCGAACCGTGCGTACATCTTCTGGTGACGG
TTGACTCCTTCGTTGGAGGGTGCAGTACAGTAGTTGTCGTTGCTGCCAGG
TGAAGTGTTTGTTTGGCGTGTCGAAGTGAAGTGGACGTCCTGTAGTCCCT
CGTTCCGGCTGTCCATCAGTAGTGGCATCAGTTGAGGTAGGTGTCTACGT
AGCGACAAGCATTTGTGTGTCTGTTCAACACGAGTGTCCTTTTATTGTAT
TTTTTTTCATGGGTTTTTGTTCTGCCTCGTTTTGTCACGGAGGGAAACTG
TGGCCGAGTTTTCGAGAATGTGTACGCTATTATTGTAGATATGTATCTCA
CTTGCATTGCATAGTCTAAACCACATGCGCTGTCCCTTCGTTTTGTTGTC
CAGTTCTGACGCTGGGCAAACCTGAAAATGTGTTAGTTCCTTCGATTCCG
TACAACCAGGATGTATTTTGCCCATAGCAACCAAGAGTCGATCTTGCATT
GTTCCGTACCTCATTTTTGACCACTACATGTGTTGCCTTTCTTTTTTCTT
TTTTGTCACTCAGGCGTGGCACGAGTTCGAGGTAGCCCACGGCAACGAGG
AGACCTTCCGGGAGATGCTGAGGACGAAGCTCTCGGTGCAGATGTCGTTC
AGCCAGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7861:231..6489+

>mRNA_E_fasciculatus_S2_contig7861.16027.1 ID=mRNA_E_fasciculatus_S2_contig7861.16027.1|Name=mRNA_E_fasciculatus_S2_contig7861.16027.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=816bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7861:231..6489+ (Ectocarpus fasciculatus EfasUO2)
AAAAAACAAACATCCCGACCGCAGGTGCCTGTTCAGGAGCGCGTGTTCCG
CAGCACGCGCGTGTGGAATCTGTACCTAGACCTGGAGGAGTCCCTGGGCA
CCGTGCAGACCGCTAAGGCCGCGTACGAGCGGGCATTTGAGCTCAAGGTG
GCGTCGGCTCAGATGGTGCTCAACTTCGCTTCTTTCCTGGAAGAGAACAA
GTACTTCGAGGACGCATTCAGAGTCTACGAGAAGGGCGTGAGCATGTTCT
CCTTCCCCAACGTGAAGCCCATCTGGATCCGTTACCTGGAACGGTTCGTG
GAGCGCTACGGGGGTTCCAAGCTGGAGAGGGCGCGAGACTTGTTCGAGCA
GGCTGTGGAGAAGGTCCCCGAGAAGGACGCCGGGGACCTGTACATCCGCT
ACGCCAAGCTCGAGGAGACGCACGGCCTCATGCGCCACGCGGCCTCGGTG
TTGGACCGCGCGTGCGCCGCCGTGGAGGAATCGGAGAAGCTAGACATGTT
CCGCCTCTACGTTGCAAAGGTGGAGTCGTGGTACGGCGTCACCCAAACCC
GGCAGGTGTACGAGAAGGCCATCAAGGATCTCAACGAGGAGGGGGCTAGG
GAGATGTGCTTGGCGTTCGCGACGGTGGAGCAGAAGCTGGGAGAGGTGGA
CAGGGCCAGGGCCGTCTTGACCTACGGCAGCCAGTTCGCGGACCCGAGGA
GGGCCGAGCCCTACTGGCAGGCGTGGCACGAGTTCGAGGTAGCCCACGGC
AACGAGGAGACCTTCCGGGAGATGCTGAGGACGAAGCTCTCGGTGCAGAT
GTCGTTCAGCCAGGTG
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