mRNA_E_fasciculatus_S2_contig785.16019.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig785.16019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT85_ECTSI) HSP 1 Score: 1064 bits (2751), Expect = 0.000e+0 Identity = 634/881 (71.96%), Postives = 659/881 (74.80%), Query Frame = 1
Query: 2104 MVAMTPVEYAGGERTEVALDLDRGNLHVYHAASGEGRRGNHRIVPLSKVSASVAKRNPKLVVLRWSGRHLATIGQGAWREVSGRDAAHRKRVKAASRTSSTTCNTGSTASQTPLLPSXXXXXXGASAVSAGWLHPGPEDDVDTNFAIEAFSVRARSGNRSSRPSCRVPSSARRYFRQALPAVASGSGGDRGTISAQGNNSYSSSVSCDVSLEPCPVRAPCGEWPSIAATEGARKGAGGGVAAV-DKGVRVLSSQGCDSSGTLLRPTPPAHARNSSKSWRFTTCPPEERGANSAPTVGAACSGASPLWTTRTVPACRADRAAMRQGGEQEDWVPPYANQDDEQDGGXXXXXXXXXXXXXGAMESITAALKRAQLKEGDAGKKRDGKPTFVAALSSAFAKRVGTGATTSAVAAEARAPQEGINRDGSEDRGGDRHIAAQDGAAPAQGIGHGHPASIKEHLHHQRQNHPPTAAAAGLGATPNQTPTAEATILPRRWTLVNKIRAKSTTIPGAPQGDIGNGSVASRRKIAMTGVPKEPSRRWHMVKAETNAVKAYRRAQVAASTRAARSKASKKRWGGLKVVRNTTSYLMHALMVGSNEIDDDEFSCSEGEERGVGGGGSGDRPRRS--EVGDTAGGSASENSSSIWCESSSDDYSSSDQEGDSHSDGYASMYMQHDGSRSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEENDAPPSKLSNSNRTATRKAMVLSGSRTAELGKLFFAGSIVIAGLQEPIQKQLADQFVREIPNVEVRIVADVASTIQTVQIMPPSLVLVAWAAFSSAKFARDFLGDGARGLRGIKPGLPVAVVGGENDGEGLRMSLEAMGASAVLLWPYKPEDVTGMLETCLNVR 4737
MVAMTPVEYAGGERTEVALDLDRGNLHVYHAA GEGRR NHR+VPLSKVSASVAKRNPKLVVLRWSGRHLATIGQGAWR+VSGR+AAHRKR+KA S TSST NTGS A +TPLLPS GA SAGWL+PGPEDDVD NFAIEAFSVRARSGNRSSRPS RVPSSARRYFRQALPAVASGSGGDRGTISAQGNNSYSSSV+CD SLEP PVRAP G WPS+AATEGAR GAG GVAA DKGVR SSQGCDSSG LLRPTPPAHARN S+SWRFTTCPPEERGANSAPTVG ACS ASPLWTTRTV ACR D AAM QGGE++DWVPPYANQDDE DG XXXXXXXXXXXXX AM+SI AALK+AQL EGD GKKRDG PTFVAALSSAFAKRV TG T SAVAAEARA QEGI+RDG+ED GDRHIAAQDGAAPA GIGHGHPA AEA ILPRRWTLVNKIRAKSTT PGAPQG IGNGSVAS KIAM GV ++PS+RWHMVKAETNAVKAYRRAQVAASTRAAR KASKK+WG LKV R TTSYLM+ALMVGS+EIDDDE SCSEGEERGVG GGSG+RPRR E+GD AGGSASENSSSIW SRTAELGKLFFAGSIVIAGLQEP+QKQLADQFVR+IPNVEVRIVADVASTIQTVQIMPPSLVLVAWAAFSSAKFARDFLGDGARGLRGIKPGLPVAVVGGENDGE GMLETCLNVR
Sbjct: 1 MVAMTPVEYAGGERTEVALDLDRGNLHVYHAARGEGRRDNHRVVPLSKVSASVAKRNPKLVVLRWSGRHLATIGQGAWRDVSGRNAAHRKRLKAVSITSSTAWNTGSVAKETPLLPSSSAAAAGAGVASAGWLNPGPEDDVDKNFAIEAFSVRARSGNRSSRPS-RVPSSARRYFRQALPAVASGSGGDRGTISAQGNNSYSSSVACDASLEPRPVRAPRG-WPSMAATEGARTGAGDGVAAAPDKGVRFPSSQGCDSSGALLRPTPPAHARNISQSWRFTTCPPEERGANSAPTVGVACSRASPLWTTRTVSACRTDGAAMTQGGEEDDWVPPYANQDDELDGXXXXXXXXXXXXXXRAMKSIAAALKQAQLTEGDDGKKRDGNPTFVAALSSAFAKRVVTGVTASAVAAEARAQQEGIDRDGNEDECGDRHIAAQDGAAPAHGIGHGHPAPFN----------------------------AEAGILPRRWTLVNKIRAKSTTTPGAPQGHIGNGSVASNGKIAMAGVTRKPSKRWHMVKAETNAVKAYRRAQVAASTRAARHKASKKQWGELKVARITTSYLMNALMVGSDEIDDDEPSCSEGEERGVGRGGSGNRPRRGRREIGDAAGGSASENSSSIW--------------------------------------------------------------------------------------------------SRTAELGKLFFAGSIVIAGLQEPVQKQLADQFVRDIPNVEVRIVADVASTIQTVQIMPPSLVLVAWAAFSSAKFARDFLGDGARGLRGIKPGLPVAVVGGENDGE-------------------------GMLETCLNVR 728
BLAST of mRNA_E_fasciculatus_S2_contig785.16019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG00_9PHAE) HSP 1 Score: 493 bits (1270), Expect = 6.230e-157 Identity = 340/444 (76.58%), Postives = 356/444 (80.18%), Query Frame = 1
Query: 3181 MESITAALKRAQLKEGDAGKKRDGKPTFVAALSSAFAKRVGTGATTSAVAAEARAPQEGINRDGSEDRGGDRHIAAQDGAAPAQGIGHGHPASIKEHLHHQRQNHPPTAAAAGLGATPNQTPTAEATILPRRWTLVNKIRAKSTTIPGAPQGDIGNGSVASRRKIAMTGVPKEPSRRWHMVKAETNAVKAYRRAQVAASTRAARSKASKKRWGGLKVVRNTTSYLMHALMVGSNEIDDDEFSCSEGEERGVGGGGSGDRPRRS--EVGDTAGGSASENSSSIWCESSS-DDYSSSDQEGDSHSDGYASMYMQHDGSRSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------EENDAPPSKLSNSNRTATRKAMVLSGSRTAELGKLFFAGSIVIAGLQEPIQKQLADQFVREIPNVEVRIVADVASTIQTVQ 4482
MESI AALK+AQ EGD GK+RDGKPTFVAALSS FAKRV TGAT SAVAAEARA QEGI+RDG+ED GDRHIAAQDGAAP++GIGHGHPA A+A ILPRRW L NKIRAK TT PGAPQGDIGNGSVAS KIAM GV ++PS+RW MVKAETNAVK YRRAQVAASTR AR K KRWGGLKV RNTTSYLMHALMVGS+EIDDDE SCSEGEERGVGG G+RPRR EVGD AGGSASENSSSIWCESSS DDYSSSD+EGDSHSDGYASMYMQHD S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E NDAPPSKLS+ R ATR A LS SRTAELGKLFFAGSIVIAGLQEP+QKQLADQFVR+IPNVEVRIVADVASTIQ Q
Sbjct: 1 MESIAAALKQAQSAEGDDGKRRDGKPTFVAALSSTFAKRVVTGATASAVAAEARAQQEGIDRDGNEDECGDRHIAAQDGAAPSRGIGHGHPAPFN----------------------------ADAGILPRRWALENKIRAKRTTTPGAPQGDIGNGSVASNGKIAMAGVTRKPSKRWRMVKAETNAVKVYRRAQVAASTREARRKVCTKRWGGLKVARNTTSYLMHALMVGSDEIDDDESSCSEGEERGVGGRVRGNRPRRGRREVGDAAGGSASENSSSIWCESSSSDDYSSSDKEGDSHSDGYASMYMQHDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENNDAPPSKLSSYKRMATRNA--LSRSRTAELGKLFFAGSIVIAGLQEPLQKQLADQFVRDIPNVEVRIVADVASTIQLCQ 414
BLAST of mRNA_E_fasciculatus_S2_contig785.16019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT86_ECTSI) HSP 1 Score: 362 bits (929), Expect = 1.340e-110 Identity = 217/273 (79.49%), Postives = 230/273 (84.25%), Query Frame = 1
Query: 949 RSSGQRQPRSAPHSSAAVPSNMSQRQKSAMENEDGGGEPGLSHWGTEPASSLFGESTIDLGAGXXXXXXXXAESSIDLEGVNTERGPSPSVVPANSSKRRCGDRGDDN-RTARGDSSVQGDRDASDEAPRASRRELTAEEAKTRAGAPGNDAEKEKGXXXXXXXXAGEDGGGRGDVHHSRSASVGGAGAATGGAVGEQLPSPRSQQLAARKIGDGRGHGVEGNNRARSRERPHQTPLVGPSSTVGGKTRGGGSPRRSENAHGGASALDGRWTR 1764
RS+GQRQPRSA S+A PSN+SQRQKSA+ENEDG GEP L+HWGTEPASSLFG STIDLGA XXXXXXXX ESSIDLEGVNTERG SPS VPANSSKRR GDRGDD RTARGDSS QG+RD SDE RAS R+LTAEEA AGAPGN+AEKEKG GEDG GRG+V HSRS SVGGAGAATG AVGE+LP PR QQLAARK GDGRGHGV G++RARSRERPHQTPLVG SSTVGGK RGGGSPRRSENAHG ASALDGRW +
Sbjct: 23 RSTGQRQPRSARRSAAVGPSNISQRQKSAVENEDGRGEPDLNHWGTEPASSLFGGSTIDLGAXXXXXXXXXGESSIDLEGVNTERGASPSAVPANSSKRRSGDRGDDTIRTARGDSSEQGNRDESDEVLRASDRDLTAEEATATAGAPGNEAEKEKGGHADREEGGGEDGAGRGNVRHSRSESVGGAGAATGDAVGERLPPPRPQQLAARKSGDGRGHGVRGDSRARSRERPHQTPLVGSSSTVGGKVRGGGSPRRSENAHGRASALDGRWAQ 295
BLAST of mRNA_E_fasciculatus_S2_contig785.16019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT87_ECTSI) HSP 1 Score: 132 bits (331), Expect = 1.380e-32 Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 1
Query: 1 MGVEESQDDDAMASGRTNLAERIQSNKDRSARRRETLRLDRAQKKRQSQPRAEKSPELHEEPPNIMTELYDISDLVELERERAR 252
MGVEESQDDD MAS RT+LAERIQSNKDRSARRRE+LRLDR KKRQSQPRAEKSPEL EEPPNIMTELYDISDLVELERER R
Sbjct: 1 MGVEESQDDDVMASERTSLAERIQSNKDRSARRRESLRLDRVLKKRQSQPRAEKSPELQEEPPNIMTELYDISDLVELERERVR 84 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig785.16019.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig785.16019.1 >prot_E_fasciculatus_S2_contig785.16019.1 ID=prot_E_fasciculatus_S2_contig785.16019.1|Name=mRNA_E_fasciculatus_S2_contig785.16019.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1581bp MGVEESQDDDAMASGRTNLAERIQSNKDRSARRRETLRLDRAQKKRQSQPback to top mRNA from alignment at E_fasciculatus_S2_contig785:8303..20682+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig785.16019.1 ID=mRNA_E_fasciculatus_S2_contig785.16019.1|Name=mRNA_E_fasciculatus_S2_contig785.16019.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=12380bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig785:8303..20682+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig785:8303..20682+ >mRNA_E_fasciculatus_S2_contig785.16019.1 ID=mRNA_E_fasciculatus_S2_contig785.16019.1|Name=mRNA_E_fasciculatus_S2_contig785.16019.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=4743bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig785:8303..20682+ (Ectocarpus fasciculatus EfasUO2)back to top |