mRNA_E_fasciculatus_S2_contig785.16017.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig785.16017.1
Unique NamemRNA_E_fasciculatus_S2_contig785.16017.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig785.16017.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ27_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.010e-65
Identity = 125/186 (67.20%), Postives = 135/186 (72.58%), Query Frame = 1 
Query:    1 MAGNGDGQQQQKQPHPDWIAHYARVGQERQEAEILRLVRDAREKMVSG--------GGGVGP-------------FRVESSTSCGTSNPSTEVASLIRQFDEKLTRSQEDNTQLRVFCSHLEGLLAANPAPTTGGRARAGVALPTAGFGSRVDAGEVVGCCSADGANGGAGIKCGPSPPFALRREP 495
            MAGN DGQQQ KQP+PDW AHYARVGQE+QEAEILRLVRDAREKMVSG        G G  P                     CGTSNPSTEVASLIRQFDEKL+RS E+NTQLRVFCSHLEGLLA+NPAP+TGG  RAG A+PT G G + D G  VGCCSAD ANGG  IKC PSPP +LRR+P
Sbjct:  482 MAGNDDGQQQPKQPYPDWFAHYARVGQEKQEAEILRLVRDAREKMVSGXXXXXXXXGCGGKPASXXXXXXXXXXXXXXXXXXGCGTSNPSTEVASLIRQFDEKLSRSLEENTQLRVFCSHLEGLLASNPAPSTGGGVRAGAAMPTGGCGRQADFG--VGCCSADVANGGTAIKCRPSPPLSLRRDP 665
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BLAST of mRNA_E_fasciculatus_S2_contig785.16017.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT88_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.820e-18
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    4 AGNGDGQQQQKQPHPDWIAHYARVGQERQEAEILRLVRDAREKMVSGG 147
            AGN DGQQQQKQP+PDW AHYARVGQE+QEAEILRLVRDAREKMVSGG
Sbjct:  401 AGNDDGQQQQKQPYPDWFAHYARVGQEKQEAEILRLVRDAREKMVSGG 448
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig785.16017.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.010e-6567.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.820e-1891.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig785contigE_fasciculatus_S2_contig785:685..1653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size521
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_005640.3
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842446.1352835-CDS-E_fasciculatus_S2_contig785:684..10241696842446.1352835-CDS-E_fasciculatus_S2_contig785:684..1024Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 685..1024 -
1696842446.1466818-CDS-E_fasciculatus_S2_contig785:1474..16531696842446.1466818-CDS-E_fasciculatus_S2_contig785:1474..1653Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig785 1475..1653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig785.16017.1prot_E_fasciculatus_S2_contig785.16017.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig785 685..1653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig785.16017.1

>prot_E_fasciculatus_S2_contig785.16017.1 ID=prot_E_fasciculatus_S2_contig785.16017.1|Name=mRNA_E_fasciculatus_S2_contig785.16017.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=173bp
MAGNGDGQQQQKQPHPDWIAHYARVGQERQEAEILRLVRDAREKMVSGGG
GVGPFRVESSTSCGTSNPSTEVASLIRQFDEKLTRSQEDNTQLRVFCSHL
EGLLAANPAPTTGGRARAGVALPTAGFGSRVDAGEVVGCCSADGANGGAG
IKCGPSPPFALRREPPPGGKARR
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mRNA from alignment at E_fasciculatus_S2_contig785:685..1653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig785.16017.1 ID=mRNA_E_fasciculatus_S2_contig785.16017.1|Name=mRNA_E_fasciculatus_S2_contig785.16017.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=969bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig785:685..1653- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGGCAACGGCGACGGGCAACAGCAGCAGAAGCAGCCCCACCCCGA
CTGGATCGCGCACTACGCCAGGGTGGGCCAAGAGCGGCAGGAAGCGGAGA
TCTTGAGGCTTGTCAGGGACGCGCGTGAGAAGATGGTTTCCGGCGGCGGG
GGGGTTGGACCGTTTCGCGTTGAATCGAGGTAAGGCGGGTTTGGTTGTTG
TGTCGCGGATGGCGTGGTGCTGGTGTCCTTGCTGTGTGCCAGGGCGATGA
AACCGACGGTGTTTCGGGCAGGGGGGGGCGTTCATCGAAGCGCAAGGAAT
GAGGCTACGGTTGTTTTGGGTGGGGTGTGTCTGCACTGTTAGCGTCGACC
GCGCCGGTCGGCTGACTAATGAACCGACGCCACCTTTCCAGTGCGGCTGC
AAACAGAAAACGCTTCCTAAGGGCTACCATACCATGATCTGGGTGGGACC
CCCGTGACAAGGTTCACGGAGGACGTGTGTGTGTGTGTGTGTGTTTTCTT
ATCGACTGTAGCATCGACCACGCTAACCGGCTGAGCAATGTGTGTAAGTG
TGTTGTGTGTTTTCGTTGTCGATGACCAGCCAGTCCCTTTCCTGCTCGCT
CCCTCTCGTCCAAACATCACCACCACCAGCACCAGCTGCGGCACCAGCAA
CCCGTCGACCGAGGTGGCCTCCCTGATCCGCCAGTTCGACGAGAAGCTAA
CGCGGTCCCAGGAAGACAACACCCAGCTAAGGGTCTTCTGCTCCCACCTG
GAGGGACTGCTAGCCGCCAACCCCGCGCCCACTACCGGAGGAAGGGCAAG
GGCGGGGGTAGCGCTGCCCACGGCCGGCTTTGGTAGTCGGGTCGATGCAG
GAGAGGTGGTGGGCTGTTGTAGCGCCGACGGCGCCAACGGCGGGGCCGGT
ATCAAGTGCGGCCCGAGCCCCCCTTTTGCCTTGCGTCGGGAGCCGCCGCC
GGGCGGCAAAGCTAGGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig785:685..1653-

>mRNA_E_fasciculatus_S2_contig785.16017.1 ID=mRNA_E_fasciculatus_S2_contig785.16017.1|Name=mRNA_E_fasciculatus_S2_contig785.16017.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig785:685..1653- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGGCAACGGCGACGGGCAACAGCAGCAGAAGCAGCCCCACCCCGA
CTGGATCGCGCACTACGCCAGGGTGGGCCAAGAGCGGCAGGAAGCGGAGA
TCTTGAGGCTTGTCAGGGACGCGCGTGAGAAGATGGTTTCCGGCGGCGGG
GGGGTTGGACCGTTTCGCGTTGAATCGAGCACCAGCTGCGGCACCAGCAA
CCCGTCGACCGAGGTGGCCTCCCTGATCCGCCAGTTCGACGAGAAGCTAA
CGCGGTCCCAGGAAGACAACACCCAGCTAAGGGTCTTCTGCTCCCACCTG
GAGGGACTGCTAGCCGCCAACCCCGCGCCCACTACCGGAGGAAGGGCAAG
GGCGGGGGTAGCGCTGCCCACGGCCGGCTTTGGTAGTCGGGTCGATGCAG
GAGAGGTGGTGGGCTGTTGTAGCGCCGACGGCGCCAACGGCGGGGCCGGT
ATCAAGTGCGGCCCGAGCCCCCCTTTTGCCTTGCGTCGGGAGCCGCCGCC
GGGCGGCAAAGCTAGGAGG
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