mRNA_E_fasciculatus_S2_contig7845.16013.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7845.16013.1
Unique NamemRNA_E_fasciculatus_S2_contig7845.16013.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7845.16013.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM7_ECTSI)

HSP 1 Score: 553 bits (1424), Expect = 1.440e-196
Identity = 271/315 (86.03%), Postives = 291/315 (92.38%), Query Frame = 1 
Query:    1 PFFFSVNEAVYERIEVNCSVDSWRYLLDSNTTYKTNVTFPDVNATE----VSVPGLFSAESSDLFIDSYSLENAVAISDSLMSRTIEVALTCDQVQTVTAEESCLQFELNFTNASPEVDKELLESALYRFLEPAVPGVVLPLAGAYSPGDVWLNEGNPIVDIDGTATDEGCNGEISEYLAEDGEWYFYFTGSDGNTYNMTHVFYATFQDHLNVAKIQAPWSPNLERALFNRTVRMSIYCNNINEREDGYVLFKVGDGNGYFDINLADYEAILTDSGSSSFATPWGGGAAGRGWLSSAFSFAIVGALTAWVGKLSE 933
            P  + VNE VY+R +VNCSVDSWRYLLD+N TY TNVTFPD NATE    VSVPGLF+AES +LFIDSYS + AVAISDSL  RTIEVAL+CDQVQTVTAE+SCLQF+LNFTN SPEVDKELLESALYRF EPAVPGVVLPLAGAYSPGDVWLNEGNPIVDIDG+ TDEGCNGE+SEYL EDGEWY+YFTGSDGN YNMTHVFYAT QDHLNVAKIQAPWSPNLERALFNRTVRMSIYCNN+NEREDGYV+FKVGDGNGYFDIN+ADYEAILTDSGS++FATPWGGGAAGRGWLSSAF+F +VGALTAWVGKLSE
Sbjct:   61 PIVYLVNENVYDRYQVNCSVDSWRYLLDNNVTYATNVTFPDANATENATEVSVPGLFAAESHELFIDSYSADKAVAISDSLFGRTIEVALSCDQVQTVTAEDSCLQFQLNFTNGSPEVDKELLESALYRFQEPAVPGVVLPLAGAYSPGDVWLNEGNPIVDIDGSVTDEGCNGEVSEYLGEDGEWYYYFTGSDGNAYNMTHVFYATEQDHLNVAKIQAPWSPNLERALFNRTVRMSIYCNNVNEREDGYVIFKVGDGNGYFDINVADYEAILTDSGSTAFATPWGGGAAGRGWLSSAFTFVVVGALTAWVGKLSE 375
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BLAST of mRNA_E_fasciculatus_S2_contig7845.16013.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM5_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 3.660e-71
Identity = 128/264 (48.48%), Postives = 173/264 (65.53%), Query Frame = 1 
Query:   46 VNCSVDSWRYLLDSNTTYKTNVTFPDV-----NATEVSVPGLFSAESS-DLFIDSYSLENAVAISDSLMSRTIEVALTCDQV-QTVTAEESCLQFELNFTNASPEVDKELLESALYRFLEPAVPGVVLPLAGAYSPGDVWLNEGNPIVDIDGTATDEGCNGEISEYLAEDGEWYFYFTGSDGNTYNMTHVFYATFQDHLNVAKIQAPWSPNLERALFNRTVRMSIYCNNINEREDGYVLFKVGDGNGYFDINLADYEAILTDSG 816
            V+C+ DSWRY   +N  +KT ++FP        A  VS  G F+A    ++ +       A A+SDSL  R IE+ALTC+Q  Q V  E+SC+ F+++FTN SP  D  +   AL+RF +PAVPG+ +PLA   SPGD+ LNEGNP+V++DG+    GCNG+++EYL EDGEWYF+FTGSDG  YN+THVFY T  D L++A IQ+ WSPNLE AL NR VR+ I+C+N    EDGY++FK+G     FD +  D+  +    G
Sbjct:   81 VDCTGDSWRYQA-ANGEWKTELSFPATWESSDAAPMVSFEGFFNATGDGEITVSGIPTSIAPAVSDSLYGRNIELALTCNQEDQIVMEEDSCVLFQVDFTNYSPTFDVNM---ALFRFEDPAVPGIEMPLAQPLSPGDIQLNEGNPVVELDGSEVSWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTTDFDQLHIATIQSAWSPNLEAALHNRYVRLLIHCSNQVNHEDGYLIFKIGGQE--FDESCDDHSGLCVHDG 338
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BLAST of mRNA_E_fasciculatus_S2_contig7845.16013.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.060e-19
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:  502 NGEISEYLAEDGEWYFYFTGSDGNTYNMTHVFYATFQDHLNVAKIQAPWSPNLERALFNRTVRMSIYCNNINEREDGYVLFKVGDGNGYFDINLADYEAILTD 810
            +G  +EYL EDG WY +FTGSDG  YN+THVF+ T  D L++A IQ+  S NLE A  NR VR+ I C+N    EDGY++F+VG  +  FD +  D+  +  D
Sbjct:  129 SGSKAEYLREDGAWYSWFTGSDGQRYNLTHVFFTTDFDQLHIATIQSARSLNLEAASHNRYVRLLILCSNQVNHEDGYLIFQVGGQD--FDESCDDHLGLCVD 229
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7845.16013.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.440e-19686.03protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM7... [more]
Uncharacterized3.660e-7148.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.060e-1948.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7845contigE_fasciculatus_S2_contig7845:3774..7131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size958
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001390.1
Cds size711
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7845.16013.1prot_E_fasciculatus_S2_contig7845.16013.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7845 3790..6648 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.7740183-UTR-E_fasciculatus_S2_contig7845:3773..37891696842445.7740183-UTR-E_fasciculatus_S2_contig7845:3773..3789Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7845 3774..3789 -
1696842445.8306658-UTR-E_fasciculatus_S2_contig7845:6648..67411696842445.8306658-UTR-E_fasciculatus_S2_contig7845:6648..6741Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7845 6649..6741 -
1696842445.840807-UTR-E_fasciculatus_S2_contig7845:6993..71311696842445.840807-UTR-E_fasciculatus_S2_contig7845:6993..7131Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7845 6994..7131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.787324-CDS-E_fasciculatus_S2_contig7845:3789..40891696842445.787324-CDS-E_fasciculatus_S2_contig7845:3789..4089Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7845 3790..4089 -
1696842445.7987223-CDS-E_fasciculatus_S2_contig7845:4794..49231696842445.7987223-CDS-E_fasciculatus_S2_contig7845:4794..4923Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7845 4795..4923 -
1696842445.8100507-CDS-E_fasciculatus_S2_contig7845:5376..55571696842445.8100507-CDS-E_fasciculatus_S2_contig7845:5376..5557Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7845 5377..5557 -
1696842445.8202164-CDS-E_fasciculatus_S2_contig7845:6547..66481696842445.8202164-CDS-E_fasciculatus_S2_contig7845:6547..6648Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7845 6548..6648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7845.16013.1

>prot_E_fasciculatus_S2_contig7845.16013.1 ID=prot_E_fasciculatus_S2_contig7845.16013.1|Name=mRNA_E_fasciculatus_S2_contig7845.16013.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=237bp
MSRTIEVALTCDQVQTVTAEESCLQFELNFTNASPEVDKELLESALYRFL
EPAVPGVVLPLAGAYSPGDVWLNEGNPIVDIDGTATDEGCNGEISEYLAE
DGEWYFYFTGSDGNTYNMTHVFYATFQDHLNVAKIQAPWSPNLERALFNR
TVRMSIYCNNINEREDGYVLFKVGDGNGYFDINLADYEAILTDSGSSSFA
TPWGGGAAGRGWLSSAFSFAIVGALTAWVGKLSESW*
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mRNA from alignment at E_fasciculatus_S2_contig7845:3774..7131-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7845.16013.1 ID=mRNA_E_fasciculatus_S2_contig7845.16013.1|Name=mRNA_E_fasciculatus_S2_contig7845.16013.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3358bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7845:3774..7131- (Ectocarpus fasciculatus EfasUO2)
CCGTTTTTTTTTTCAGTGAACGAAGCCGTCTACGAACGAATCGAGGTTAA
CTGCAGCGTTGACTCCTGGCGATATCTGCTTGACAGCAATACCACATACA
AGACCAACGTCACTTTCCCGGATGTGAACGCTACAGAGGTGATTATTTGT
TGGAATGTAGTGGCGACCTAAAACGTGCGGGCCAGCCGATAGGCAGGGCT
CTTGTTTTGGAGTACCGTATGTGGCGTTGTGTTCTGGAGGCATCGGTTTA
TCCCGCGTTGATTTCATTCTTCCACCTTTGACAACGACAACAAAGACAAC
AACGACAGCAAGAGTGGCAGCATCAACTACAAGTAGAACTACAACAACAT
GAACCAAAACATGACCAACAACGACGGCAATCGGTGACAGGTGTCGGTCC
CGGGGCTTTTCTCGGCCGAGTCGTCCGACCTCTTCATCGACTCGTACTCG
TTGGAGAACGCGGTGGCCATCTCGGACTCGCTCATGTCCCGGACGATAGA
GGTCGCGCTCACGTGCGACCAGGTGCAGACGGTGACGGCGGAGGAATCGT
GCTTGCAGTTCGAGCTAAACTTCACTAACGCCAGGTGCGGCCTGATTTTC
GTCAGAGGCATGGTGCCCCGCAGAATGTAAAATGATGCACGGGGGTGTTT
TTTATGAAGGCCGTCGTCCCCCGTTTTTGGGACACCTTGTTTTGACGAAA
AATTGTGAGCGTCCTGCAAGGGGGCCCCGGTTTTGCGACCCCGAGCGCCA
CGACGAAATGTGGCCGCTATTCAGGGCAGGTCGCCTAAGTAGCAATTATT
GGCAGGTACACTACCGGGGTGTCGCGGTGCCACGTGATTTGTGGTCGTCG
CTGAACCGAGACCCCCGCTGTTTGCATAAAAAACGGGGATACGGCTGTAT
CTAAGCGTAGGGCGTGTTGGTGCCGGGTCTAAGGCGTTGGTGCTATCGCA
AGAACAGGTCCCATTCTTGAAGGGATGCGCGCGGCTGTGGGCGTTGTAAG
CTGAACGAACGGCCAAATGGTGGGCTGACACCTCGACAATGTGTGTACGT
TGATACAAGCAGGTGTATCTCCGTCGTAAGGTAATTAGTTACAGCAGCAG
GTGCCACAGCAGTCATCGTCCAGTGGTGGAAGTCGGAGGCATGCTACTGT
CCGTATTGGCGTGCGTGTTGCGTGGAGAGGGCCCAAACAAACAAACAACT
TTGTTCAAAGTTAGTCGATGCCTTATACAACGACAACGATTCGCCGCAGC
GGCAGCATGATGAGGGAACTCGGTACGAATTTCAGGACCTNNNNNNNNNN
GGCATGCTACTGTCCGTATTGGCGTGCGTGTTGCGTGGAGAGGGCCCAAA
CAAACAAACAACTTTGTTCAAGGTTAGGCATTTACGAGACTAGTCGATGC
CTTATACAACGACAACGATTCGCCGCAGCGGCAGCATGATGAGGGAACTC
GGTACGAATTTCAGGACCTACCCCCTCGAAAATCACACTCCAACCCCCAT
CCCCCCCCTTTTTTTTTCTGTGTGTGCCCCTTCGCCTCCTTCTCCTCCAA
CACGCATGTAAAAAAAAAAAACAGTCCCGAGGTTGACAAGGAGCTGCTTG
AGAGCGCCCTCTACCGCTTCCTAGAGCCGGCGGTGCCAGGCGTCGTGCTG
CCTCTCGCCGGAGCCTACTCGCCGGGAGATGTCTGGCTCAACGAGGGCAA
CCCGATTGTCGATATCGACGGGACAGCCACCGACGAAGGCTGCAACGGAG
AAATTGTGAGTCGGTGGATGGATGTGGAGGATGATGGAGAGCTTTGGGGG
CGTATTTGAGGATAGGTTGTTGCACTTGGAGGATATTTTTTTAGGTAGTG
GTGATAGTGGTGGTGGGTCAAAATGGGCGAAGCTCCTGAGGGATGGGTTC
GATTCTGTTGTGGGTAGATCGTTGCACTTGAAAAGACTTTGAAGGTGGTT
GGTGGGGGTGAAGAGCACGGGGTGCGGTTGGTTATTTCTCCATTGCGGGT
AGTCCCCCCGCCCCTGAGTCTCATGAGCCGCTGACACCCCACGCATTGCG
TAGCTCCCGGGTGTTCTTCGCCACCCGCCACTCGATCAACCTCGACCGCG
CGTACCCTGCCTCGACTCTTGACTTTGCCGTCTCATGGTTCTCTCGCCTT
CGCGTCGTTTTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGTTGTTGG
CAATGCAGTCGGAGTACTTGGCAGAAGACGGAGAGTGGTACTTTTACTTC
ACGGGCAGCGACGGCAACACCTACAACATGACGCACGTCTTCTACGCCAC
GTTTCAGGACCACCTCAACGTGGCCAAGATCCAAGCGGTAAGCTTAAGCT
TGTCAAGTCAAGCGCGGTTGTTTTCTTGCTGGTGGCTTTGCTTTTAAGCC
CCGGCGGTAGACTACATGCCTACTTCGTGATCTGTGTGTGTCGCGGCGTG
TGGGTGACTGCCCGCCCGAGTGTTTGGAGTGATTTTTGTGGCTTTGCAGT
GTGTCCGGTTGGTCGAGACGTAAGACTTAGGCTGGCCACGGAGTGGTCTG
CGGGTATCTTGGAAGGACGCCCGTTGTCTACGTAGTCCTGTGTCTCGCCT
TTTTGTCAGTGGTCTCTGCCGCGAGCGCCCTCTCTGTCTTGCCACACACA
ACGCTTCTCTCCCTCTCGCGTGGTATGCCCACGCACTGAGGTACAACTGC
GCCGGGTCTGTTTGGGATCATGGTGTTGTGCGAAGCACGTAGAGCAGAAT
TGCCGTGGTTTCAAGGCTTACTCACCACTCGGCAAAGCCGCCCCCTTACA
TATAGCTCTCCCTTTTTTTTCTTTCAAGAGCATGTGTCGGTGCCCGCCCG
GATGGTGCAACCGATGGATGGGTGTTTCGGCCAGGCCGCGTGGTGGATCC
AACTGGAGTCGTGTTTTGTTATTAGTTGTTTTTATCAGGGTGGCGATCGT
CATCCCCACGACCACGCTGGTACACACGGGCTGCGTGCAAGCCCTAATCT
CCCTCCCCTCCCCCCTCGCTTCTTCATCAATCCGGCGAACAGCCCTGGAG
CCCCAACCTCGAGCGCGCCCTGTTCAACCGAACGGTACGGATGTCGATCT
ACTGCAACAACATCAACGAGCGAGAGGATGGCTACGTCCTCTTCAAGGTG
GGCGACGGGAACGGGTACTTCGACATCAACCTCGCCGATTACGAGGCCAT
CCTGACGGACAGCGGGTCCTCCTCCTTCGCCACGCCCTGGGGAGGGGGCG
CGGCCGGCCGTGGCTGGCTCTCCTCGGCGTTCTCGTTCGCCATCGTGGGG
GCGCTGACCGCGTGGGTCGGAAAGTTATCGGAAAGTTGGTAGTGGTTTTG
GCTTTTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7845:3774..7131-

>mRNA_E_fasciculatus_S2_contig7845.16013.1 ID=mRNA_E_fasciculatus_S2_contig7845.16013.1|Name=mRNA_E_fasciculatus_S2_contig7845.16013.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7845:3774..7131- (Ectocarpus fasciculatus EfasUO2)
ATGTCCCGGACGATAGAGGTCGCGCTCACGTGCGACCAGGTGCAGACGGT
GACGGCGGAGGAATCGTGCTTGCAGTTCGAGCTAAACTTCACTAACGCCA
GTCCCGAGGTTGACAAGGAGCTGCTTGAGAGCGCCCTCTACCGCTTCCTA
GAGCCGGCGGTGCCAGGCGTCGTGCTGCCTCTCGCCGGAGCCTACTCGCC
GGGAGATGTCTGGCTCAACGAGGGCAACCCGATTGTCGATATCGACGGGA
CAGCCACCGACGAAGGCTGCAACGGAGAAATTTCGGAGTACTTGGCAGAA
GACGGAGAGTGGTACTTTTACTTCACGGGCAGCGACGGCAACACCTACAA
CATGACGCACGTCTTCTACGCCACGTTTCAGGACCACCTCAACGTGGCCA
AGATCCAAGCGCCCTGGAGCCCCAACCTCGAGCGCGCCCTGTTCAACCGA
ACGGTACGGATGTCGATCTACTGCAACAACATCAACGAGCGAGAGGATGG
CTACGTCCTCTTCAAGGTGGGCGACGGGAACGGGTACTTCGACATCAACC
TCGCCGATTACGAGGCCATCCTGACGGACAGCGGGTCCTCCTCCTTCGCC
ACGCCCTGGGGAGGGGGCGCGGCCGGCCGTGGCTGGCTCTCCTCGGCGTT
CTCGTTCGCCATCGTGGGGGCGCTGACCGCGTGGGTCGGAAAGTTATCGG
AAAGTTGGTAG
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