mRNA_E_fasciculatus_S2_contig7841.16011.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7841.16011.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC0_9PHAE) HSP 1 Score: 327 bits (837), Expect = 1.310e-102 Identity = 239/262 (91.22%), Postives = 242/262 (92.37%), Query Frame = 3
Query: 273 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRHQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNSHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAVEQRNSHRLTAYDVAKDHDIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPRNYEHHGVPGMGSGXXXXXXXXXXXXXXXXXXXXXASGMDAALGALMQAPTMVPLAPRPGAGMAGPPPMGMAXXXXXXXXXXX-----GFPGAQQPGSY 1043
MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNR QDKIRELLEVKGVGANTANDRGVRPMHMACQTGN+HLVQRLLELGADII XXXXXXXXXXXXXXXXXXXXXXXXXXX A VEQRNS+RLTAYDVA DH IRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPR+YEHHGVPGMGS XXXXXXXXXXXXXXXXXXX AS MDAALGALMQAPTMVPLAPRPGAGMAGPPPM XXXXXXXXX GFPGAQQPGSY
Sbjct: 1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSYRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPRSYEHHGVPGMGSXXXXXXXXXXXXXXXXXXXXGGASSMDAALGALMQAPTMVPLAPRPGAGMAGPPPMXXXXXXXXXXXXVYPPGPAGFPGAQQPGSY 262
BLAST of mRNA_E_fasciculatus_S2_contig7841.16011.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP01_ECTSI) HSP 1 Score: 206 bits (524), Expect = 2.900e-62 Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 3
Query: 273 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRHQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNSHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAVEQRNSHRLTAYDVAKDHDIRQFLLPLQLK 698
MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNR QDKIRELLEVKGVGANTANDRGVRPMHMACQTGN+HLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXX GAAVEQRNSHRLTAYDVA DH IRQFLLPLQLK
Sbjct: 1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLK 142
BLAST of mRNA_E_fasciculatus_S2_contig7841.16011.1 vs.
Match: Ankyrin (repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ6_9STRA) HSP 1 Score: 122 bits (305), Expect = 2.230e-29 Identity = 91/151 (60.26%), Postives = 111/151 (73.51%), Query Frame = 3
Query: 273 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRHQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNSHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAVEQRNSHRLTAYDVAKDHDIRQFLLPLQLKAEAGNPDYA 725
MFNFL QG +G+++AP+QS E QLLIAIQNR DK + ++ + NTA D GV P+HMACQ G L++RL ELG D+ XXXXXXXXXXXXXXXXXXXXXXXX V+ RN+ R + YD+A +H +RQ+LLPLQLKAEA NP A
Sbjct: 1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSA 151
BLAST of mRNA_E_fasciculatus_S2_contig7841.16011.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC57_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.490e-17 Identity = 62/159 (38.99%), Postives = 87/159 (54.72%), Query Frame = 3
Query: 273 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRHQDKIRELLEVKGVGANTANDRG---VRPMHMACQTGNSHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXX-GAAVEQRNSHRLTAYDVAKDHDIRQFLLPLQLKAEAGNPDYAVNTM 737
MF FL QG +GE++APV++ QL AI+ DK +LL+ +GV N A D G P+H ACQ GN ++ +L+E+GAD+ + G V +RN++R TAYDVA+ H +RQFLLPLQL+ E P+ A T+
Sbjct: 1 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQMMIDKLMEMGADVRSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRTE---PEPAAGTL 154
BLAST of mRNA_E_fasciculatus_S2_contig7841.16011.1 vs.
Match: Serine (threonine-protein phosphatase 6 regulatory n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGZ7_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.130e-17 Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = 3
Query: 273 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRHQDKIRELLEVKGVGANTANDRG---VRPMHMACQTGNSHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXX-GAAVEQRNSHRLTAYDVAKDHDIRQFLLPLQLKAE 704
MF FL QG +GE++APV++ QL AI+ DK +LL+ +GV N A D G P+H ACQ GN ++ +L+E+GAD + G V +RN++R TAYDVA+ H +RQFLLPLQL+AE
Sbjct: 22 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE 167
BLAST of mRNA_E_fasciculatus_S2_contig7841.16011.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRB0_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 4.960e-10 Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 3
Query: 288 LQGKVGEMMAPVQSQEAQLLIAIQNRHQDKIRELLE---VKGVGANTANDRGVRPMHMACQTGNSHLVQRLLELGADI-ITXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAVEQRNSHRLTAYDVAKDHDIRQFLLPLQLKAEA 707
L ++GE++APVQ++ +L I+I+ R + ELL V +G N + D + P+H+AC V+ LL GAD+ + GA++ RN+ T YDVAKD +RQ+LLPLQL+AEA
Sbjct: 12 LLNRIGEVVAPVQNENQELFISIRRRDWPRTHELLSSPNVDALGKNGSVD--MTPLHVACAEDFVQCVEYLLVNGADVNVRDTRAHETPLHHGARGGHSRVCRLLVERGASLVARNARNQTPYDVAKDLSLRQWLLPLQLRAEA 153 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7841.16011.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7841.16011.1 >prot_E_fasciculatus_S2_contig7841.16011.1 ID=prot_E_fasciculatus_S2_contig7841.16011.1|Name=mRNA_E_fasciculatus_S2_contig7841.16011.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=301bp MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRHQDKIRELLEVKGVGANTAback to top mRNA from alignment at E_fasciculatus_S2_contig7841:1945..6081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7841.16011.1 ID=mRNA_E_fasciculatus_S2_contig7841.16011.1|Name=mRNA_E_fasciculatus_S2_contig7841.16011.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4137bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7841:1945..6081- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7841:1945..6081- >mRNA_E_fasciculatus_S2_contig7841.16011.1 ID=mRNA_E_fasciculatus_S2_contig7841.16011.1|Name=mRNA_E_fasciculatus_S2_contig7841.16011.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=903bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7841:1945..6081- (Ectocarpus fasciculatus EfasUO2)back to top |