mRNA_E_fasciculatus_S2_contig7839.16008.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7839.16008.1
Unique NamemRNA_E_fasciculatus_S2_contig7839.16008.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI)

HSP 1 Score: 657 bits (1694), Expect = 8.430e-233
Identity = 360/382 (94.24%), Postives = 363/382 (95.03%), Query Frame = 1
Query:   19 MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTASLQAAKSGGGPHAAAASGITGNPAVGKGKGAKGEVLGSATARGAAAPIADDSSSGAVSVVRGDLSCSDVAAAIKSFAGGDGDDGGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVKGGWLR 1164
            MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTA LQAAKSGG P AA   GITG+PAVG G  AK EVLGS+TARGAAAPIADDSS+GAVSVVRGDLS SDVAAAIKSFA GD D GGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGL SAVDGLIRLHDA EADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRT NLGLLESAGAHEIVEDYVKG  LR
Sbjct:    1 MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTAPLQAAKSGGPPTAAP--GITGDPAVGNG--AKCEVLGSSTARGAAAPIADDSSTGAVSVVRGDLSSSDVAAAIKSFAVGD-DGGGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLCSAVDGLIRLHDASEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTANLGLLESAGAHEIVEDYVKGERLR 377          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: Epimerase (domain-containing protein n=1 Tax=uncultured Armatimonadetes bacterium TaxID=157466 RepID=A0A6J4K8H2_9BACT)

HSP 1 Score: 223 bits (567), Expect = 8.880e-64
Identity = 126/248 (50.81%), Postives = 160/248 (64.52%), Query Frame = 1
Query:  418 SVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG----EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVK 1149
            S+FHLAS++SG+ EE F +ALRVN+DG R+L +  R++GGR R VFASSIA FGG     E  TD+TKL PQ+TYGMTKA  EL++ND TRKGF DGR ARLPTV++RPG PN AA+G  S + +  L+G     PV  D RH   G  + VD LI +HD P A  G RDRAI LPA S++ R  E +  ++ARELG P G +   PD  ++ +V   P AV  S R   LGL        I+ DY++
Sbjct:   89 SIFHLASMVSGECEERFDDALRVNLDGGRNLFEAARELGGRTRLVFASSIACFGGDAAMPEPCTDQTKLTPQTTYGMTKAVCELMINDYTRKGFFDGRSARLPTVIIRPGKPNTAASGWASGMFREPLNGATCSLPVRRDQRHPMTGHRTVVDSLIAVHDLPSASIG-RDRAIGLPATSVTPRLAERALRQVARELGLPLGAIEERPDPRIQGIVDHWPVAVDGS-RALALGLPPVPPLQTIIRDYLE 334          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: Putative (epimerase/dehydratase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6UCI5_9PROT)

HSP 1 Score: 204 bits (518), Expect = 6.230e-57
Identity = 118/252 (46.83%), Postives = 159/252 (63.10%), Query Frame = 1
Query:  415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVKGGWL 1161
            + VFHLASV+S  GE+DF  A+RVN DG R +L+  R   G PR V ASS+A FGG    E VT+ T+++PQ+TYGMTKA  EL++ND TRKGF+DGR ARLPTV++RPG PN AA+G  S V +  L GQ ++ PV+ D R   +G  SA+ GL  L DA     G  DR + LP  + ++ D+  +  R+A E G   G V+ +PD A+EA+VK+ P A++ S R   LGL        I+ +Y+   WL
Sbjct:   70 IGVFHLASVVSAGGEQDFDLAMRVNFDGGRHILEALRARKGTPRIVLASSLAVFGGPDMPEAVTEMTRVVPQTTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGAPNAAASGFASGVFREPLSGQDYVLPVAMDTRMMVIGARSAIAGLTGLMDADGEGLGA-DRVVNLPNNAYAVTDMIAALERVAAENGITFGPVTPKPDPAIEAIVKSWPLAMEDS-RARALGLPADESLEAIIREYI-ADWL 318          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase family protein n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QH10_9PROT)

HSP 1 Score: 204 bits (518), Expect = 8.280e-57
Identity = 116/247 (46.96%), Postives = 157/247 (63.56%), Query Frame = 1
Query:  415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYV 1146
            + VFHLASV+SG GE+DF  A+RVN+DG R +L+ CR +G  PR +F SSIA FGG    + V D  K  PQ+TYGMTKA  EL++ND TRKGF+DGR ARLPTV++RPG PN AA+  FS + +  L G     PV PD+RH  +G  + VDG++ L++A     G  DRA TLP+ S ++ +L ++  R+A +  RP G  + EPD  ++ +VK  P A  A +R   LGL       +IV  Y+
Sbjct:   80 IGVFHLASVVSGGGEKDFDLAMRVNLDGGRYVLEACRALGSAPRVLFTSSIATFGGAAMPDVVGDLVKQTPQTTYGMTKAVLELMINDYTRKGFLDGRSARLPTVIIRPGKPNAAASSFFSGMFREPLAGVECKIPVPPDVRHPVIGYRTVVDGILALYEADSDAIGD-DRAFTLPSTSATVAELMDALDRVAGD--RPLGKRTVEPDPFIQDIVKNWPRAAGA-DRALALGLPHDNSLDDIVRAYI 322          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QK31_9PROT)

HSP 1 Score: 203 bits (517), Expect = 1.030e-56
Identity = 112/248 (45.16%), Postives = 161/248 (64.92%), Query Frame = 1
Query:  415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVK 1149
            +SVFHLASV+SG GE+DF  A+RVN+DG+R++ + CR+ G  PR VFAS++A FGG    + V D TK +PQ+TYGMTKA  EL++ND TRKGF DGR ARLPTV++RPG PN A +G  S + +  L+G  ++     + R   + +  AV+G I LH+AP    G  DRA+ LP++S+++ ++ +S  R+A +  RP G +  EPD  VE+V    P     ++R T+LGL       +IV  Y++
Sbjct:   78 ISVFHLASVVSGGGEKDFDLAMRVNLDGSRAVFEACRKRGSTPRMVFASTLATFGGSAMPKTVGDTTKQVPQTTYGMTKAACELMINDYTRKGFFDGRSARLPTVIIRPGKPNLALSGFASGIFREPLNGIDYVCAAGLETRMPVISVRMAVEGFIALHEAPGDAIG-EDRAVGLPSLSVTVAEMIDSLQRVAGD--RPLGAIKVEPDPLVESVCSTWPFYTD-NSRATSLGLPLDESLDDIVRGYIE 321          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: Epimerase (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D647_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.690e-56
Identity = 113/251 (45.02%), Postives = 158/251 (62.95%), Query Frame = 1
Query:  415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCR------QIGGRP-RFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYV 1146
            +++FHLASVMSG+GEE+F + + VN+DGT++LL+  R      ++G +P RFVF SS AAFG   +V+DETKL PQSTYGMTKA  EL+VND TRKG+VDGR  RLPTV+VRPG  N A+TGCFS+V + +L G  ++ P  P   H  +     + GL+ L +      G  DR++ LPA+  ++ +L     ++A+  G P G VS + D  V  +V   P  ++ S R  +LGL        ++EDYV
Sbjct:  101 VTIFHLASVMSGEGEEEFDKCVAVNLDGTQNLLEKARALHASGRVGEKPVRFVFPSSFAAFGPHPEVSDETKLTPQSTYGMTKAVGELMVNDYTRKGWVDGRTGRLPTVIVRPGNKNGASTGCFSAVVRELLMGHDYVIPYDPRQTHPVISTRRTIKGLLALAEVEGESLGG-DRSVNLPALQTTMEELLFHTRQIAQGRGIPMGEVSVKIDPWVSGIVGRFPQVMR-SPRAESLGLPRDGSVEAVIEDYV 349          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase family protein n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A7J9ZDJ8_9ACTN)

HSP 1 Score: 201 bits (510), Expect = 1.130e-55
Identity = 115/248 (46.37%), Postives = 154/248 (62.10%), Query Frame = 1
Query:  415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGG---GEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVK 1149
            +SVFHLAS++SG  EEDF  AL  N+ G  ++L+  R     PR VF SSIAAFGG      V+D TKL P++TYG TKA  ELLVND TRKGFVDGR ARLPTVV+RPG PN AA+   S + +  L G+  I PV PD+R    G  + VD LIRLH+ P AD G  DR + LPA++++ R++ ++   +A +  R  G +++ PD  V  +     +   +S R T LGL+   G   I+E Y++
Sbjct:   80 VSVFHLASMVSGACEEDFDGALDANLGGVHAVLEAARARSSTPRVVFTSSIAAFGGEAIAGTVSDSTKLTPETTYGTTKAIGELLVNDYTRKGFVDGRSARLPTVVIRPGRPNAAASSWCSGIFREPLGGEEAIVPVDPDIRVPISGYRTLVDNLIRLHEVPGADIGT-DRGVNLPAIAVTAREMADALRSVASD--RTLGPITHRPDPTVSRIFAGW-AQHSSSERATALGLVTDQGLEPIIEAYIE 323          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase family protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001F0D324E)

HSP 1 Score: 196 bits (497), Expect = 4.860e-54
Identity = 116/248 (46.77%), Postives = 154/248 (62.10%), Query Frame = 1
Query:  415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQ---VTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVK 1149
            +SVFHLASV+SG GE DF  A+RVN+ G  ++ + CR   G PR VFASSIA FGG      V D  K  PQ+TYGMTK   ELLVND TRKGF+DGR ARLPTV+VRPG PN AA+   S + +  L+G+    PV+P+     +G  S V G I LH+A     G  DRA++LP+ ++S+ ++ E+  R+A   GR  G + +EPD  +EA+    P      +R T LGL + A    IVE+Y++
Sbjct:   60 ISVFHLASVVSGGGELDFDLAMRVNLHGGLNVFEACRARSGLPRLVFASSIAVFGGAGMPAVVGDHVKQTPQTTYGMTKTICELLVNDYTRKGFLDGRSARLPTVIVRPGKPNQAASSFVSGLFREPLNGEVCRIPVAPETMMPVLGYRSIVGGFIALHEADGEALGD-DRAVSLPSFTVSVAEMIEALNRVAS--GRSLGEIVFEPDPFIEAICAGWPQDAS-HDRATALGLPKDASLDVIVENYIE 303          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: Putative (epimerase/dehydratase n=1 Tax=bacterium MnTg02 TaxID=2080452 RepID=A0A5J4DZI7_9BACT)

HSP 1 Score: 193 bits (491), Expect = 6.800e-53
Identity = 111/247 (44.94%), Postives = 157/247 (63.56%), Query Frame = 1
Query:  415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYV 1146
            +SVFHLASV+SG GE+DF  A+RVN+DG R +++  R     PR V ASSIA FGG    +QV D+TK  PQ+TYG+TKA +ELL+ND TRKGF+DGR ARLPTV++RPG PN AA+   S + +  L+G     PV        +G  + VDG+IRLH+ P    G  DRA++LPA+++++ D+ ++  R+A   G+P G ++ EPD  +E +V +        +R   LGL +     EI+  Y+
Sbjct:   80 ISVFHLASVVSGGGEKDFDLAMRVNLDGGRHIMEALRARSSVPRLVLASSIAVFGGAAMPDQVGDKTKQTPQTTYGITKAISELLINDYTRKGFLDGRSARLPTVIIRPGKPNAAASSFVSGLFREPLNGVDIALPVKESTLMPVLGYRAIVDGIIRLHELPSDALGD-DRALSLPALTVTVTDMLDALDRVAD--GKPLGKITIEPDPFIEEIVTSWARDTY-YDRAIALGLPKEDSIDEIISYYI 322          
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019FA2A7C)

HSP 1 Score: 192 bits (489), Expect = 1.400e-52
Identity = 109/247 (44.13%), Postives = 151/247 (61.13%), Query Frame = 1
Query:  415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQ---VTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYV 1146
            +SVFHLASV+SG GE+DF  A+RVN+DG R + +  R   G PR VFASS+A FGG      V D TK  PQ+TYG+TKA  EL+VND TRKGF DGR  RLPT+ +RPG PN AA+   S V +  L+G+  + PV  D++ A +G  +AV G + LH+A  A  G  DRA+ LP+ + ++ ++ E   R+A       G ++  PD A+EA+V    +  +A  R   LGL        +++DY+
Sbjct:   80 ISVFHLASVVSGGGEKDFDLAMRVNLDGGRHVFEAARARNGLPRVVFASSVAVFGGSAMPKVVGDTTKQTPQTTYGLTKAIGELMVNDYTRKGFFDGRTVRLPTIFIRPGKPNAAASSFASGVFREPLNGEECVLPVRTDVQMALLGYRNAVAGFVGLHEAEGAAIGD-DRAVVLPSGTYTVEEMIEGVKRVAAANDITLGPITVRPDPAIEAIVAGWATHSEAP-RAEALGLPNDESLDRVIQDYI 324          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NAD-dependent8.430e-23394.24epimerase/dehydratase n=1 Tax=Ectocarpus siliculos... [more]
Epimerase8.880e-6450.81domain-containing protein n=1 Tax=uncultured Armat... [more]
Putative6.230e-5746.83epimerase/dehydratase n=2 Tax=Alphaproteobacteria ... [more]
NAD-dependent8.280e-5746.96epimerase/dehydratase family protein n=1 Tax=Hwang... [more]
NAD-dependent1.030e-5645.16epimerase n=1 Tax=Rhodospirillaceae bacterium TaxI... [more]
Epimerase1.690e-5645.02domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
NAD-dependent1.130e-5546.37epimerase/dehydratase family protein n=1 Tax=Strep... [more]
NAD-dependent4.860e-5446.77epimerase/dehydratase family protein n=1 Tax=Pelag... [more]
Putative6.800e-5344.94epimerase/dehydratase n=1 Tax=bacterium MnTg02 Tax... [more]
NAD-dependent1.400e-5244.13epimerase/dehydratase family protein n=1 Tax=Prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7839contigE_fasciculatus_S2_contig7839:1303..6749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score666.0
Seed ortholog evalue1.1e-188
Seed eggNOG ortholog2880.D7FZ49
Model size1833
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.L-threonine 3-dehydrogenase activity
EggNOG OGsCOG0451@1,KOG2774@2759
Ec32 ortholog descriptionNAD-dependent epimerase/dehydratase, N-terminal domain
Ec32 orthologEc-02_006280.1
Cds size1149
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7839.16008.1prot_E_fasciculatus_S2_contig7839.16008.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7839 1969..6731 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.2348206-UTR-E_fasciculatus_S2_contig7839:1302..19681696842445.2348206-UTR-E_fasciculatus_S2_contig7839:1302..1968Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7839 1303..1968 -
1696842445.3380089-UTR-E_fasciculatus_S2_contig7839:6731..67491696842445.3380089-UTR-E_fasciculatus_S2_contig7839:6731..6749Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7839 6732..6749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842445.2481284-CDS-E_fasciculatus_S2_contig7839:1968..21241696842445.2481284-CDS-E_fasciculatus_S2_contig7839:1968..2124Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7839 1969..2124 -
1696842445.2594595-CDS-E_fasciculatus_S2_contig7839:2831..29251696842445.2594595-CDS-E_fasciculatus_S2_contig7839:2831..2925Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7839 2832..2925 -
1696842445.2703178-CDS-E_fasciculatus_S2_contig7839:3454..35791696842445.2703178-CDS-E_fasciculatus_S2_contig7839:3454..3579Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7839 3455..3579 -
1696842445.280683-CDS-E_fasciculatus_S2_contig7839:4263..43781696842445.280683-CDS-E_fasciculatus_S2_contig7839:4263..4378Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7839 4264..4378 -
1696842445.2977934-CDS-E_fasciculatus_S2_contig7839:4994..50501696842445.2977934-CDS-E_fasciculatus_S2_contig7839:4994..5050Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7839 4995..5050 -
1696842445.3118951-CDS-E_fasciculatus_S2_contig7839:5498..56231696842445.3118951-CDS-E_fasciculatus_S2_contig7839:5498..5623Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7839 5499..5623 -
1696842445.3274143-CDS-E_fasciculatus_S2_contig7839:6253..67311696842445.3274143-CDS-E_fasciculatus_S2_contig7839:6253..6731Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7839 6254..6731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7839.16008.1

>prot_E_fasciculatus_S2_contig7839.16008.1 ID=prot_E_fasciculatus_S2_contig7839.16008.1|Name=mRNA_E_fasciculatus_S2_contig7839.16008.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=383bp
MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTASLQAAKSGGGPHA
AAASGITGNPAVGKGKGAKGEVLGSATARGAAAPIADDSSSGAVSVVRGD
LSCSDVAAAIKSFAGGDGDDGGDHAETTSSSTLSVFHLASVMSGQGEEDF
GEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLP
QSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFS
SVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDR
AITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSA
VKASNRTTNLGLLESAGAHEIVEDYVKGGWLR*
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mRNA from alignment at E_fasciculatus_S2_contig7839:1303..6749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7839.16008.1 ID=mRNA_E_fasciculatus_S2_contig7839.16008.1|Name=mRNA_E_fasciculatus_S2_contig7839.16008.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5447bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7839:1303..6749- (Ectocarpus fasciculatus EfasUO2)
GGTGTGTCGGGCAACATCATGCAGAAGTTCGTTTTATCGGGGGGCTTGGG ACTTTTGGGGCAACGAATCCTGCAGCATATCGTTTCCTCCGGTCATGGAT GCGTTCGCGTCATGATTGTCGACACCGCTTCCCTACAAGCAGCTAAGTCT GGTGGTGGTCCTCATGCTGCTGCTGCATCTGGCATCACCGGGAATCCTGC GGTTGGTAAGGGTAAGGGTGCGAAAGGCGAGGTTCTAGGGTCCGCAACTG CTCGCGGTGCTGCGGCTCCGATCGCAGACGACAGCAGTAGCGGTGCGGTG TCGGTTGTGAGGGGTGATCTCAGCTGCAGCGACGTTGCGGCCGCGATAAA GAGCTTCGCCGGTGGTGACGGTGACGATGGCGGTGACCATGCCGAGACGA CGTCGTCATCAACTCTTTCCGTTTTCCACCTAGCGTCCGTGATGAGCGGT CAAGGGGAGGAGGACTTCGGGGAGGCCCTTCGCGTCAACATCGACGGTGT GTGCAGTGTTGAAGTGGGGGACCTCACGTCGTAGGCAGAAGAACGAGTTA GTTTCGTGCGAGATTCAACATTGCTTGTTTTCGTGGACTCTTGTCTGTGG ATAAAGTTAACAGTTGTGTTCCTGCAGTAAATTTATGGATGGCATGAAGT ACGGCCGGAATGCTCCAATATGCGGCACCAAGTAAATTGAATGCTTCTCG AGGCCTGACTATTCGTCAATTTGCTGATCAATGGTGGCGTCATGATCGAA GTTACTGCCGCCGCTTAGGCCGGGGTGGTATGCATAGCAGTGCGCAAGGA ACGCGATCTTCGCGTGTTTCTGTGTGCTACACTTGGCACCCAAGAAGCCC GTCTCAAGATCTTCAAGGCTTTCTGTTGTAGAAGGTCAGCCGTCCGGGCG AGGAGTCTGGCGTGTCCTAGTAGTCTTCTATGACCGAAGGGCCTTCTCCT GGTGGAGGATCAAGCACACATAGTCGCGGTCGATTAAGATACTTACCGGA GAATGCTTTCAAGGCACCAAAGGCTGCTTCAGCTTGTCTAGATGTTTCGC CTGACTCTTTCATTGCTCGCTATCGTTGTGTTGTGTTATTGGCGTTGCTT GTGCGGTGTGAAATGACGCATGGCAGGCACGAGATCGCTCCTGGACACGT GTCGCCAGATCGGGGGCAGGCCACGGTTTGTGTTCGCGAGCTCTATCGCC GCGTTCGGCGGAGGCGAGCAAGTCACCGACGAAACGAAGCTCCTTCCTCA GGTTATCATCACATCATCATCATCACCCAAGTAGTGTGACGATCATGGCA CCGGCATGGGGGTACTTGGAATATGACAGCCAAACAGTCGCCCTCACCTC TCTCATGGTACCACTCTTAAGAATAACAACACAGGGGTTATGGTGATCAT AACCGCATCAAGAGACAAAACAGTCAAGGCCAACCGGTGATAGATAGATC ATACATCATACAATACAAGAGGAACGGGACCAAGAGCGGTGTGTGTGTTG TATAGTATATTGTATATTGTGTGTTGTACGAAAAGCCTAAAGCTGGGCAT ACTTGCCGCAAAGGCAGTGTGCTCAGCAACACAAGCCAGGTAGCGATGCC GGTGCTGTGGCACATACACGTTTCCCAAACAAACGCTGCTCACCCTACTC GTGCGAACGTCTTGGCGCGTGGCCTGCGCTTGACCGGGTCCTGGAATAGT CGACCTATGGTATGACCAAGGCCTGCGCCGAGCTACTCGTCAACGATTGC ACAAGGTGATTTAAAAGGAATTAGACTAGGTGGCTAGCTTGTAGCGGCTT CGTCTTGGTTGTACAGTAGTGCACGCACGGAAATGGATATTTGATACTGG TACATAGCCATTGCGGAGATCGGCCCTCGACGCCCCCCCAAGTCCATAAG CGACGCAAAGTGTGGTGTGTACCTCCATAGCCATGTCAAGACCCTGTTGT GGTTACAGATGTACAAGTGTGTGGGCCGGGGCACCGCCTCTAGACGAAAC GCGCGCATAGGTTAGCACTTGTGCGTGCCGGCTTCGCCCTTCCATTGTTT GAGCCAACTTCGCGCAAGACGGCCACGCAGTGGCCTGCTCACGCACGTTT CCTCCTCCCCGTTGTTCTCTGCTGCCGTACGCTTGGTATGAAGACCCTTT TCAGTACTCTTCCGTTCGTCGTAGGTACATACCGCGCGAATTTCAGTAAG AAACATGCATACCACTTTTTCTTTCTCCCGTCTTCGCACTTTTCTCCCCC CGCCGCCAAGCTCCGCGTTCGTCGTCGAAGCGTCTTGATAGTGAGGTATG GTAAGCGATTTTGCTTCTGTTCCGTTCTGTCCCGGTGCTTGTGTTCGTTG GTATGCTTCTCCTCCTCCCAGAAAAGGGTTCGTCGACGGCCGGATAGCCC GCCTGCCTACGGTCGTTGTACGCCCAGGTCCTCCTAACCCGGCTGCCACG GGGTGCTTCAGCTCGGTGCCGAAAGCCGTGTTGCACGTGAGTCCGCCGCA CTTGACGTGTCGCGACTTGCATGATGATGATGAATATTGTGTAGCATTAT CCCTTTTTGACGACGGTGATCTGATCATCTGATCGACGATCGTGATCGGG TTTAGGTGTGTTTTCCGTCTGGGAGGGGTCCGCTCGTTTCCAAGCGATCA TCGTGTGTCTGCAGAACTTGGTTGATGCGGTAGCCGGTTGCTGTATTGTA GATGCTTGGAGTCGCTTTCGAGCCCTCGGCACCATCCGTTGCTATGTACT GTACCGGTGTCGATTGATTGCATGGAACATGTCGATCGATGGTATGATAT TAGCCACAGCTGTAGTCGTACGAGCATTCCAACGACCCGCTGCGAGAACA GTCCGGGCAGCTCGAGAGAGCCACGTGCATGCTGTCGGGCCAAGAACTCT GTATTATGTACAGTATGCAGCAATGGTGGGCCCGGTTTGGCGACCCCTAA AATAGCGTCGGGGAGGGGATATGGTCGCTATCCAGGGCAGGTCGCTGTTG TGGGTGTTGCGGCTGGTGGTCGTGTAGTTAACTAAGGTCAGGGTTAGTCC CGTCTGCATGTGCCCTATCGCTCGCCCCACGCCCTTTTTTCTTTGTCTAC ACACCGTACTGTACTGCTATAATACAACCCCCGCGGCCGCCGCCGCCGCC ACGACCACTACCAACGTCAGGGGCAACACTTCATTTCGCCGGTCTCCCCT GATCTCCGACACGCCTGTGTCGGTCTCTCTTCGGCCGTGGATGGCTTGAT CCGTTTGCATGACGCACCGGAAGCAGACTTTGGGCCGAGAGACCGGTCAG TGCACGCGTACACCTCTCTGTTCAATTGCTTTCGAAGGTTCCCTAAGGAG TCGATTCTCATCGTTCGTGCGGACATACCGTGCGTATTGTAATGAAGCGT TGCCGTTATTGTGCAGTCGTGGGACTGGACATCTACAATAGATTATTTCC CACTCGGAAAACGAACGGAGGAGGGCACGGGGAAGGGCAGAGCGTCCATG TTTTGTTCTTGCGTTTGTCTTTTTCGCTACTGTCGATGATGGATTCTTTT CGAGACAAGAGCAGGGGTGGAAGGGGGGGGGAGCAAAGACCGGCGGTGTG ATATCCCATGCAGCAGGAAGACCTTGGAAGGAAGTATTATGACGCGTGCT CGCCGACAGGATGCATGATTACGTTTGTCTTTTTCTTCGGGAACCTCCAG CGTTTGCATTGCAGCCTGTTCGTGTTGCTCTCGACGCCTTGCTCCCAAGA TCTCATTTCAATCTTCCCGAAGTAATGCCGCCGCTTGCCTCCTTCTCCCT CCGCGTCTCTTTGTGAACCAACAGCGCGATCACACTGCCGGCAGTGAGCC TTAGCTTGCGTGACCTCGAGGAGAGTGCAGCGAGGCTCGCCAGAGAGCTA GGCAGACCTCCGGGAACGGTATGTTCGGAATTGCATGACCGCCGTACGAT ACATACATAGCTGAGAGCAGAGCTGATTGTATGTACTATGTGTGTGTGGT AGAATTGTACCGTGGGTGACATGACGTAAGCCATCACGACCCCGGGACCG AGTGTTTCAAGGCTCGATTACTCCATGTCGAAGAGGATGATAGGATGTGT ATATTATATATGTATCGTTCTCGGAACGCTCTCTCTCTCTCTCTCTCTCT CTCTCGACGAGTGAAGAAGAGAGACGAGACGAGACGGTTCCAACGTCATT GCCATTGTCATTTTCTTTTTCGAGACGGCCGCTTTTTCCGCCGTGGAGTA TTCGAGCTTTGAAAATCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTTC GGTACAGTTCTAGCATTACTGTTTTTGTAAATACCGGAATAGTGCACCAT CTCACCGCCAGTTTGCTAGGTACCAAGCGCGCGCTAGTGTCACACAAAAG GCACGAGACGCTGTGAGACTTTCGGGGAAGCGTTTTGATACTTCGACGCA GCCTTGAACATATATCTTAGCTTCAGCCGCGTCCACTGCCAATGGCCCAA AGTCTCCCCACACAAACACTGCACGCTACGTACATAGACTACAGGAGCAG TGTTCATGTTGGTCCTGACCCCTATCTTATCTTTCCCCCCCCCGCACCCC GTCCCGTGATTTGTGCACCGGAAAGGTTTCGTATGAGCCTGATAGCGCGG TGGAGGCCGTAGTTAAGGCAATGCCGTCGGCTGTAAAGGCGTCCAACAGG ACTACAAACCTCGGGCTGCTCGAGAGTGCAGGAGCACACGAGATAGTGGA AGACTACGTCAAGGGCGGGTGGCTGAGATAGCACCGCTCGGACGTCATGA CCGTTTTTTGTTCACGTGTGCTCTACCGTCCGTGCCATTACATTAGTTTA TCGACTGAGGGAGTCAAGGGTCAGCATGTAGAAGAGACCAGGAAGTGAGG GAGGGCCGACATAGTCTATGTATCGAATATCGAATTAGGTGATATATGTA GTATATAGTCATTTGACAATTTGTCTCCTGTTCTCTTCTGTGTTGCACGA CCACGGTGGTGTGGACCGCCTTTCTTTATTCTTTATGGTACAACATGGAG TGGTTGTCACCTCTTGCTTTTTTCGATGTCGTTTTTGCATCGAAGGATGT GGGTGTTTTGGCTATTACCATTTTGAAGGCGAAGCTGTGAAAATAGTGCG CGGTTAGTCCGTTTGGTTCTAGAGTTGGACGATTGCCGATTGTTTCGGCC AGTAATTTGTTCTTCTGCGACCGGCCGCGTCGTTCTCGATCATATTATAG GCGAGTAGAGTAGGTGATGGTACCGCGAAATTTAGGCGCTGCAAGCGTGC ACGGCTTGGCACCCTCCCTCACAACAGACAAATACTCTCCACCGAGAGTA CTACAGTACACACTTCCCTTCCCGCCATTTTCTGTTGATTATCCTGGGGA ACTCACATACATACTTGAATGATGGATGTAGCACAGAAGGTTGTGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7839:1303..6749-

>mRNA_E_fasciculatus_S2_contig7839.16008.1 ID=mRNA_E_fasciculatus_S2_contig7839.16008.1|Name=mRNA_E_fasciculatus_S2_contig7839.16008.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7839:1303..6749- (Ectocarpus fasciculatus EfasUO2)
ATGCAGAAGTTCGTTTTATCGGGGGGCTTGGGACTTTTGGGGCAACGAAT
CCTGCAGCATATCGTTTCCTCCGGTCATGGATGCGTTCGCGTCATGATTG
TCGACACCGCTTCCCTACAAGCAGCTAAGTCTGGTGGTGGTCCTCATGCT
GCTGCTGCATCTGGCATCACCGGGAATCCTGCGGTTGGTAAGGGTAAGGG
TGCGAAAGGCGAGGTTCTAGGGTCCGCAACTGCTCGCGGTGCTGCGGCTC
CGATCGCAGACGACAGCAGTAGCGGTGCGGTGTCGGTTGTGAGGGGTGAT
CTCAGCTGCAGCGACGTTGCGGCCGCGATAAAGAGCTTCGCCGGTGGTGA
CGGTGACGATGGCGGTGACCATGCCGAGACGACGTCGTCATCAACTCTTT
CCGTTTTCCACCTAGCGTCCGTGATGAGCGGTCAAGGGGAGGAGGACTTC
GGGGAGGCCCTTCGCGTCAACATCGACGGCACGAGATCGCTCCTGGACAC
GTGTCGCCAGATCGGGGGCAGGCCACGGTTTGTGTTCGCGAGCTCTATCG
CCGCGTTCGGCGGAGGCGAGCAAGTCACCGACGAAACGAAGCTCCTTCCT
CAGTCGACCTATGGTATGACCAAGGCCTGCGCCGAGCTACTCGTCAACGA
TTGCACAAGAAAAGGGTTCGTCGACGGCCGGATAGCCCGCCTGCCTACGG
TCGTTGTACGCCCAGGTCCTCCTAACCCGGCTGCCACGGGGTGCTTCAGC
TCGGTGCCGAAAGCCGTGTTGCACGGGCAACACTTCATTTCGCCGGTCTC
CCCTGATCTCCGACACGCCTGTGTCGGTCTCTCTTCGGCCGTGGATGGCT
TGATCCGTTTGCATGACGCACCGGAAGCAGACTTTGGGCCGAGAGACCGC
GCGATCACACTGCCGGCAGTGAGCCTTAGCTTGCGTGACCTCGAGGAGAG
TGCAGCGAGGCTCGCCAGAGAGCTAGGCAGACCTCCGGGAACGGTTTCGT
ATGAGCCTGATAGCGCGGTGGAGGCCGTAGTTAAGGCAATGCCGTCGGCT
GTAAAGGCGTCCAACAGGACTACAAACCTCGGGCTGCTCGAGAGTGCAGG
AGCACACGAGATAGTGGAAGACTACGTCAAGGGCGGGTGGCTGAGATAG
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