mRNA_E_fasciculatus_S2_contig7839.16008.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI) HSP 1 Score: 657 bits (1694), Expect = 8.430e-233 Identity = 360/382 (94.24%), Postives = 363/382 (95.03%), Query Frame = 1
Query: 19 MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTASLQAAKSGGGPHAAAASGITGNPAVGKGKGAKGEVLGSATARGAAAPIADDSSSGAVSVVRGDLSCSDVAAAIKSFAGGDGDDGGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVKGGWLR 1164
MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTA LQAAKSGG P AA GITG+PAVG G AK EVLGS+TARGAAAPIADDSS+GAVSVVRGDLS SDVAAAIKSFA GD D GGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGL SAVDGLIRLHDA EADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRT NLGLLESAGAHEIVEDYVKG LR
Sbjct: 1 MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTAPLQAAKSGGPPTAAP--GITGDPAVGNG--AKCEVLGSSTARGAAAPIADDSSTGAVSVVRGDLSSSDVAAAIKSFAVGD-DGGGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLCSAVDGLIRLHDASEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTANLGLLESAGAHEIVEDYVKGERLR 377
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: Epimerase (domain-containing protein n=1 Tax=uncultured Armatimonadetes bacterium TaxID=157466 RepID=A0A6J4K8H2_9BACT) HSP 1 Score: 223 bits (567), Expect = 8.880e-64 Identity = 126/248 (50.81%), Postives = 160/248 (64.52%), Query Frame = 1
Query: 418 SVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG----EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVK 1149
S+FHLAS++SG+ EE F +ALRVN+DG R+L + R++GGR R VFASSIA FGG E TD+TKL PQ+TYGMTKA EL++ND TRKGF DGR ARLPTV++RPG PN AA+G S + + L+G PV D RH G + VD LI +HD P A G RDRAI LPA S++ R E + ++ARELG P G + PD ++ +V P AV S R LGL I+ DY++
Sbjct: 89 SIFHLASMVSGECEERFDDALRVNLDGGRNLFEAARELGGRTRLVFASSIACFGGDAAMPEPCTDQTKLTPQTTYGMTKAVCELMINDYTRKGFFDGRSARLPTVIIRPGKPNTAASGWASGMFREPLNGATCSLPVRRDQRHPMTGHRTVVDSLIAVHDLPSASIG-RDRAIGLPATSVTPRLAERALRQVARELGLPLGAIEERPDPRIQGIVDHWPVAVDGS-RALALGLPPVPPLQTIIRDYLE 334
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: Putative (epimerase/dehydratase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6UCI5_9PROT) HSP 1 Score: 204 bits (518), Expect = 6.230e-57 Identity = 118/252 (46.83%), Postives = 159/252 (63.10%), Query Frame = 1
Query: 415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVKGGWL 1161
+ VFHLASV+S GE+DF A+RVN DG R +L+ R G PR V ASS+A FGG E VT+ T+++PQ+TYGMTKA EL++ND TRKGF+DGR ARLPTV++RPG PN AA+G S V + L GQ ++ PV+ D R +G SA+ GL L DA G DR + LP + ++ D+ + R+A E G G V+ +PD A+EA+VK+ P A++ S R LGL I+ +Y+ WL
Sbjct: 70 IGVFHLASVVSAGGEQDFDLAMRVNFDGGRHILEALRARKGTPRIVLASSLAVFGGPDMPEAVTEMTRVVPQTTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGAPNAAASGFASGVFREPLSGQDYVLPVAMDTRMMVIGARSAIAGLTGLMDADGEGLGA-DRVVNLPNNAYAVTDMIAALERVAAENGITFGPVTPKPDPAIEAIVKSWPLAMEDS-RARALGLPADESLEAIIREYI-ADWL 318
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase family protein n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QH10_9PROT) HSP 1 Score: 204 bits (518), Expect = 8.280e-57 Identity = 116/247 (46.96%), Postives = 157/247 (63.56%), Query Frame = 1
Query: 415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYV 1146
+ VFHLASV+SG GE+DF A+RVN+DG R +L+ CR +G PR +F SSIA FGG + V D K PQ+TYGMTKA EL++ND TRKGF+DGR ARLPTV++RPG PN AA+ FS + + L G PV PD+RH +G + VDG++ L++A G DRA TLP+ S ++ +L ++ R+A + RP G + EPD ++ +VK P A A +R LGL +IV Y+
Sbjct: 80 IGVFHLASVVSGGGEKDFDLAMRVNLDGGRYVLEACRALGSAPRVLFTSSIATFGGAAMPDVVGDLVKQTPQTTYGMTKAVLELMINDYTRKGFLDGRSARLPTVIIRPGKPNAAASSFFSGMFREPLAGVECKIPVPPDVRHPVIGYRTVVDGILALYEADSDAIGD-DRAFTLPSTSATVAELMDALDRVAGD--RPLGKRTVEPDPFIQDIVKNWPRAAGA-DRALALGLPHDNSLDDIVRAYI 322
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QK31_9PROT) HSP 1 Score: 203 bits (517), Expect = 1.030e-56 Identity = 112/248 (45.16%), Postives = 161/248 (64.92%), Query Frame = 1
Query: 415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVK 1149
+SVFHLASV+SG GE+DF A+RVN+DG+R++ + CR+ G PR VFAS++A FGG + V D TK +PQ+TYGMTKA EL++ND TRKGF DGR ARLPTV++RPG PN A +G S + + L+G ++ + R + + AV+G I LH+AP G DRA+ LP++S+++ ++ +S R+A + RP G + EPD VE+V P ++R T+LGL +IV Y++
Sbjct: 78 ISVFHLASVVSGGGEKDFDLAMRVNLDGSRAVFEACRKRGSTPRMVFASTLATFGGSAMPKTVGDTTKQVPQTTYGMTKAACELMINDYTRKGFFDGRSARLPTVIIRPGKPNLALSGFASGIFREPLNGIDYVCAAGLETRMPVISVRMAVEGFIALHEAPGDAIG-EDRAVGLPSLSVTVAEMIDSLQRVAGD--RPLGAIKVEPDPLVESVCSTWPFYTD-NSRATSLGLPLDESLDDIVRGYIE 321
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: Epimerase (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D647_9STRA) HSP 1 Score: 204 bits (519), Expect = 1.690e-56 Identity = 113/251 (45.02%), Postives = 158/251 (62.95%), Query Frame = 1
Query: 415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCR------QIGGRP-RFVFASSIAAFGGGEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYV 1146
+++FHLASVMSG+GEE+F + + VN+DGT++LL+ R ++G +P RFVF SS AAFG +V+DETKL PQSTYGMTKA EL+VND TRKG+VDGR RLPTV+VRPG N A+TGCFS+V + +L G ++ P P H + + GL+ L + G DR++ LPA+ ++ +L ++A+ G P G VS + D V +V P ++ S R +LGL ++EDYV
Sbjct: 101 VTIFHLASVMSGEGEEEFDKCVAVNLDGTQNLLEKARALHASGRVGEKPVRFVFPSSFAAFGPHPEVSDETKLTPQSTYGMTKAVGELMVNDYTRKGWVDGRTGRLPTVIVRPGNKNGASTGCFSAVVRELLMGHDYVIPYDPRQTHPVISTRRTIKGLLALAEVEGESLGG-DRSVNLPALQTTMEELLFHTRQIAQGRGIPMGEVSVKIDPWVSGIVGRFPQVMR-SPRAESLGLPRDGSVEAVIEDYV 349
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase family protein n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A7J9ZDJ8_9ACTN) HSP 1 Score: 201 bits (510), Expect = 1.130e-55 Identity = 115/248 (46.37%), Postives = 154/248 (62.10%), Query Frame = 1
Query: 415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGG---GEQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVK 1149
+SVFHLAS++SG EEDF AL N+ G ++L+ R PR VF SSIAAFGG V+D TKL P++TYG TKA ELLVND TRKGFVDGR ARLPTVV+RPG PN AA+ S + + L G+ I PV PD+R G + VD LIRLH+ P AD G DR + LPA++++ R++ ++ +A + R G +++ PD V + + +S R T LGL+ G I+E Y++
Sbjct: 80 VSVFHLASMVSGACEEDFDGALDANLGGVHAVLEAARARSSTPRVVFTSSIAAFGGEAIAGTVSDSTKLTPETTYGTTKAIGELLVNDYTRKGFVDGRSARLPTVVIRPGRPNAAASSWCSGIFREPLGGEEAIVPVDPDIRVPISGYRTLVDNLIRLHEVPGADIGT-DRGVNLPAIAVTAREMADALRSVASD--RTLGPITHRPDPTVSRIFAGW-AQHSSSERATALGLVTDQGLEPIIEAYIE 323
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase family protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001F0D324E) HSP 1 Score: 196 bits (497), Expect = 4.860e-54 Identity = 116/248 (46.77%), Postives = 154/248 (62.10%), Query Frame = 1
Query: 415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQ---VTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYVK 1149
+SVFHLASV+SG GE DF A+RVN+ G ++ + CR G PR VFASSIA FGG V D K PQ+TYGMTK ELLVND TRKGF+DGR ARLPTV+VRPG PN AA+ S + + L+G+ PV+P+ +G S V G I LH+A G DRA++LP+ ++S+ ++ E+ R+A GR G + +EPD +EA+ P +R T LGL + A IVE+Y++
Sbjct: 60 ISVFHLASVVSGGGELDFDLAMRVNLHGGLNVFEACRARSGLPRLVFASSIAVFGGAGMPAVVGDHVKQTPQTTYGMTKTICELLVNDYTRKGFLDGRSARLPTVIVRPGKPNQAASSFVSGLFREPLNGEVCRIPVAPETMMPVLGYRSIVGGFIALHEADGEALGD-DRAVSLPSFTVSVAEMIEALNRVAS--GRSLGEIVFEPDPFIEAICAGWPQDAS-HDRATALGLPKDASLDVIVENYIE 303
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: Putative (epimerase/dehydratase n=1 Tax=bacterium MnTg02 TaxID=2080452 RepID=A0A5J4DZI7_9BACT) HSP 1 Score: 193 bits (491), Expect = 6.800e-53 Identity = 111/247 (44.94%), Postives = 157/247 (63.56%), Query Frame = 1
Query: 415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGG---EQVTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYV 1146
+SVFHLASV+SG GE+DF A+RVN+DG R +++ R PR V ASSIA FGG +QV D+TK PQ+TYG+TKA +ELL+ND TRKGF+DGR ARLPTV++RPG PN AA+ S + + L+G PV +G + VDG+IRLH+ P G DRA++LPA+++++ D+ ++ R+A G+P G ++ EPD +E +V + +R LGL + EI+ Y+
Sbjct: 80 ISVFHLASVVSGGGEKDFDLAMRVNLDGGRHIMEALRARSSVPRLVLASSIAVFGGAAMPDQVGDKTKQTPQTTYGITKAISELLINDYTRKGFLDGRSARLPTVIIRPGKPNAAASSFVSGLFREPLNGVDIALPVKESTLMPVLGYRAIVDGIIRLHELPSDALGD-DRALSLPALTVTVTDMLDALDRVAD--GKPLGKITIEPDPFIEEIVTSWARDTY-YDRAIALGLPKEDSIDEIISYYI 322
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Match: NAD-dependent (epimerase/dehydratase family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019FA2A7C) HSP 1 Score: 192 bits (489), Expect = 1.400e-52 Identity = 109/247 (44.13%), Postives = 151/247 (61.13%), Query Frame = 1
Query: 415 LSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQ---VTDETKLLPQSTYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLSSAVDGLIRLHDAPEADFGPRDRAITLPAVSLSLRDLEESAARLARELGRPPGTVSYEPDSAVEAVVKAMPSAVKASNRTTNLGLLESAGAHEIVEDYV 1146
+SVFHLASV+SG GE+DF A+RVN+DG R + + R G PR VFASS+A FGG V D TK PQ+TYG+TKA EL+VND TRKGF DGR RLPT+ +RPG PN AA+ S V + L+G+ + PV D++ A +G +AV G + LH+A A G DRA+ LP+ + ++ ++ E R+A G ++ PD A+EA+V + +A R LGL +++DY+
Sbjct: 80 ISVFHLASVVSGGGEKDFDLAMRVNLDGGRHVFEAARARNGLPRVVFASSVAVFGGSAMPKVVGDTTKQTPQTTYGLTKAIGELMVNDYTRKGFFDGRTVRLPTIFIRPGKPNAAASSFASGVFREPLNGEECVLPVRTDVQMALLGYRNAVAGFVGLHEAEGAAIGD-DRAVVLPSGTYTVEEMIEGVKRVAAANDITLGPITVRPDPAIEAIVAGWATHSEAP-RAEALGLPNDESLDRVIQDYI 324 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7839.16008.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7839.16008.1 >prot_E_fasciculatus_S2_contig7839.16008.1 ID=prot_E_fasciculatus_S2_contig7839.16008.1|Name=mRNA_E_fasciculatus_S2_contig7839.16008.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=383bp MQKFVLSGGLGLLGQRILQHIVSSGHGCVRVMIVDTASLQAAKSGGGPHAback to top mRNA from alignment at E_fasciculatus_S2_contig7839:1303..6749- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7839.16008.1 ID=mRNA_E_fasciculatus_S2_contig7839.16008.1|Name=mRNA_E_fasciculatus_S2_contig7839.16008.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5447bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7839:1303..6749- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7839:1303..6749- >mRNA_E_fasciculatus_S2_contig7839.16008.1 ID=mRNA_E_fasciculatus_S2_contig7839.16008.1|Name=mRNA_E_fasciculatus_S2_contig7839.16008.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7839:1303..6749- (Ectocarpus fasciculatus EfasUO2)back to top |