mRNA_E_fasciculatus_S2_contig782.15988.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig782.15988.1
Unique NamemRNA_E_fasciculatus_S2_contig782.15988.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig782.15988.1 vs.
Match: ARM (repeat domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZ58_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.990e-5
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 QASGLGALQSVCFDKPGRDATRGS-GLIGAVVRLLEDDSPKVRARALGTVHNLSTDARSIGI 183
            QA+  GALQSV + + GR     S GL+  +V LL    PKVRARA+G +HNLS++  +I I
Sbjct:  182 QANAAGALQSVSYHEEGRKELLASEGLLPRIVNLLASQEPKVRARAVGALHNLSSEPGTIRI 243
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BLAST of mRNA_E_fasciculatus_S2_contig782.15988.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGK9_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 6.290e-5
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 QASGLGALQSVCFDKPGRDATRGSGLIGAVVRLLED--DSPKVRARALGTVHNLSTDARSI 177
            QA+  GA+QS+CF + GR   R    + A++RLL +   + KV+ RA+G +HN+S+DA SI
Sbjct:  173 QANAAGAIQSICFQEKGRARVRDLDGVPAMLRLLGECRGNVKVQTRAIGAIHNMSSDADSI 233
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig782.15988.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
ARM1.990e-548.39repeat domain-containing protein n=1 Tax=Chloropic... [more]
Hypothetical6.290e-544.26protein (Fragment) n=1 Tax=Mantoniella antarctica ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig782contigE_fasciculatus_S2_contig782:61..2401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size501
Hectar predicted targeting categoryother localisation
Exons5
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.5754309-CDS-E_fasciculatus_S2_contig782:60..1311696842443.5754309-CDS-E_fasciculatus_S2_contig782:60..131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig782 61..131 +
1696842443.5870192-CDS-E_fasciculatus_S2_contig782:887..10111696842443.5870192-CDS-E_fasciculatus_S2_contig782:887..1011Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig782 888..1011 +
1696842443.5975027-CDS-E_fasciculatus_S2_contig782:1173..13531696842443.5975027-CDS-E_fasciculatus_S2_contig782:1173..1353Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig782 1174..1353 +
1696842443.6082327-CDS-E_fasciculatus_S2_contig782:1947..20041696842443.6082327-CDS-E_fasciculatus_S2_contig782:1947..2004Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig782 1948..2004 +
1696842443.619068-CDS-E_fasciculatus_S2_contig782:2332..24011696842443.619068-CDS-E_fasciculatus_S2_contig782:2332..2401Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig782 2333..2401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig782.15988.1prot_E_fasciculatus_S2_contig782.15988.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig782 61..2401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig782.15988.1

>prot_E_fasciculatus_S2_contig782.15988.1 ID=prot_E_fasciculatus_S2_contig782.15988.1|Name=mRNA_E_fasciculatus_S2_contig782.15988.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=167bp
QASGLGALQSVCFDKPGRDATRGSGLIGAVVRLLEDDSPKVRARALGTVH
NLSTDARSIGIIREEGGLPRLVRLLRSHEAHVCGGAAGTIQNLSREEKSR
ALLLESFGAVEPLADLLVGRHVKSQISAAGALVNIVGPDARGSKRQLLHD
VVTDGIVLGVIESCMV*
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mRNA from alignment at E_fasciculatus_S2_contig782:61..2401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig782.15988.1 ID=mRNA_E_fasciculatus_S2_contig782.15988.1|Name=mRNA_E_fasciculatus_S2_contig782.15988.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2341bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig782:61..2401+ (Ectocarpus fasciculatus EfasUO2)
CAGGCCAGCGGATTAGGAGCGCTGCAGAGCGTGTGCTTTGACAAGCCCGG
CAGGGACGCCACAAGAGGCAGGTGACATCGTTGGGCCCTCACGGACGCGA
ATCTTGTTCAAAGCTCTAAGGTGTTTCGCTACATGCTTCGAGCCTACCAA
TAAAAAAGCAGTGTAGCAATTTGCGTGGACATCGTTTGTACATGAAACGG
TGCAAAGAGGAGAACCCCTACTTGGAGCTCAGGCTGTCCCCCTTCTTGGC
TTGCGATGAAGGCTTCAACTTTTTAGATGTAGGTGAGAAATGCCACACCT
AAAAGTCCTGGCGCAGGCGCCAGGTGTGCTAACTAGTGGCATCGCACCCT
TTCCAGAAAACCGCTCGACCAACGTCTCGAGCTGCGAGTTCGTTCCTCGC
CCCTCGCCGGGCTTGTGGCAGAGTAGAAGACTATGTATCCTGGCGTGTGA
TGACTTGGGTCCGCCGGAGCTCAGACTCCATGGCGAGACCCCGCGTTGTT
GCAACATGTGCCAAACACCAGGGTTTTTTTGCGGTCGTAGAATGGAATCT
CGACAGTTGCATCCCCACGCTGCTTTCCTCCCTTGCTCAGCGTGCTTACG
AGCGATCGTCGTTTCGGCTGATGGCCGCAAACAAGCTTAAAGTAGGACAC
GAGCTCGCGCAACTCCAGAGAAACAACACTCTCTCTCTCTCTCTCTCTCT
CTCTCTTACTCACCCAAAAAATCGATTTGTGCTATACGTGTGCAAACATT
ATGTTTCCGGTCTAAACCAACAACCGCCGGATGTCTTGTTCTGAATGTGC
TCACCCGCCAATCGGCCGACCAGATAGCGGTTTAATCGGCGCGGTGGTGA
GGCTGCTGGAAGACGACAGCCCCAAAGTACGAGCGAGGGCACTGGGCACG
GTCCACAACCTCAGCACCGACGCTCGGAGCATCGGGATCATTCGGGAAGA
GGTGAGCGCAAACTGGCTGGGATAGATCGGGTTTGAAACAACTATACGAA
CAACGACCACAACCACATGACAACAACGGTAACAACGTCCTCCCTATGCA
ACAACACTCGAGCAATAGAAGCAAACCTGACACATTCATGTGGGATACAA
CGCGTGAAAGTAGGGGGGCTTGCCGCGGCTGGTGCGGCTCCTTCGATCTC
ACGAGGCGCACGTGTGCGGAGGTGCGGCGGGAACGATACAGAACCTGTCG
CGGGAGGAGAAGAGTCGCGCCCTGCTGCTCGAGAGCTTCGGAGCGGTGGA
GCCCCTGGCGGATTTGCTGGTCGGGCGACACGTCAAGAGCCAGGTGCGCG
GCTGCGGCTTTACGTCGCATGGCACTCCAGCGGCAGGATGCCGCCGCTTG
ATCGCCCCACCGAGGGGAGATCGCTAAAGCCGGGCGCTGTGTCTTGCGAA
GGCTCGCAAAACATCACAAACACACTCCCGATGATGAGCCGATGCCGGTT
CTTCGGTTGTACCAGGGCAGACTCATCTTTTACTGTAGGGTGGTCGAGTA
CAGGAGATCGGCCTTCCCACGGTTCTTCTCCAGGGATGGCGTGGGCAGGA
GATAATCGTGTGAAAGCCTTCACGGCGTGATGAGGCAACACGTTGTGGGG
TGCGTGCTACTGCAGCGCCCGCCCGTATCCATACACACAATACAGCTTGA
CCTCGGACAGCGGTTCCAGGCAACCGTGTGCTTGATCTCGCAGACAGCCG
TCCGTGGCCCCATCGCATCTATCTGCGGGACCGCCTTTTGCTGCGTTTTG
AATGCAATGCATGGTCGTATGGGGGCCAAAATTGGTTGGGCTCGACGAGG
TAACCCTCGTCACTGCTGTCGTTTGCTTTTCTATGTCTTCTATGGTGGCA
ACGGCGGCGGCGATGACGGCGACGGTTTTTCATGTAGATCTCCGCGGCGG
GAGCCCTCGTCAACATTGTCGGCCCGGACGCGAGAGGAAGCAAGGTGGGT
TGGCGAATTAAAACAGCGTCGGGTAGTGCGATCGTGCAGGCCGACCAATT
GTATATGCATTGCGGACTTACGGAACGTGCACAGTGACGGCTGCTGCTGG
ACCGGAACGACATGTCGTGGGTTTCTTTCGTGCCCGGACTATCTATGCGT
TCCTTCCGTCAATTCTGGTTTGGTCGATACGCCCTTATGCGCTCGACCGC
CTCCAATTATCCACCCACCCCCACCCCGAGGTCAATGGCCTAACGACTAC
GGCACCCCCCCACCCCACCCGCTCCTGTCGACCCTGTGCGTTGCTCCGAA
TCGCCACCGGCTATCCAACCAGCGGCAGCTGCTGCACGACGTGGTGACGG
ACGGGATCGTCCTCGGGGTGATCGAGAGCTGCATGGTTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig782:61..2401+

>mRNA_E_fasciculatus_S2_contig782.15988.1 ID=mRNA_E_fasciculatus_S2_contig782.15988.1|Name=mRNA_E_fasciculatus_S2_contig782.15988.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=501bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig782:61..2401+ (Ectocarpus fasciculatus EfasUO2)
CAGGCCAGCGGATTAGGAGCGCTGCAGAGCGTGTGCTTTGACAAGCCCGG
CAGGGACGCCACAAGAGGCAGCGGTTTAATCGGCGCGGTGGTGAGGCTGC
TGGAAGACGACAGCCCCAAAGTACGAGCGAGGGCACTGGGCACGGTCCAC
AACCTCAGCACCGACGCTCGGAGCATCGGGATCATTCGGGAAGAGGGGGG
CTTGCCGCGGCTGGTGCGGCTCCTTCGATCTCACGAGGCGCACGTGTGCG
GAGGTGCGGCGGGAACGATACAGAACCTGTCGCGGGAGGAGAAGAGTCGC
GCCCTGCTGCTCGAGAGCTTCGGAGCGGTGGAGCCCCTGGCGGATTTGCT
GGTCGGGCGACACGTCAAGAGCCAGATCTCCGCGGCGGGAGCCCTCGTCA
ACATTGTCGGCCCGGACGCGAGAGGAAGCAAGCGGCAGCTGCTGCACGAC
GTGGTGACGGACGGGATCGTCCTCGGGGTGATCGAGAGCTGCATGGTTTG
A
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