mRNA_E_fasciculatus_S2_contig7819.15987.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7819.15987.1
Unique NamemRNA_E_fasciculatus_S2_contig7819.15987.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7819.15987.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJE9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.230e-41
Identity = 95/151 (62.91%), Postives = 109/151 (72.19%), Query Frame = 3 
Query:  360 QAKGQKRPHTGGEDARDHQKEKKXXPSENNKKAKEQALAAAIYGQENI----------LYKKMGKGGMHAQRQVKLSLWRKAGGQVVEDEDRIARLRAKMQAGIKARDKQKRKAEISMRRMVRAGIYTGWDDLKPNMALIERAREGLPHRP 782
            QAKG KRPH G E ARD QK+KK   S  ++ A  QA AAAIYGQ               KKM K  +H QRQ +L LWR+AGGQVVEDE RI  LR KMQAGI+A+DKQKRKA +SMRRMVRAGIYTGWDD  PN+ALI++AR+GLP+RP
Sbjct:  256 QAKGHKRPHPGEEGARDRQKKKKKNLSTADR-AVRQAQAAAIYGQSQQHRQQSKKNPQQLKKMSKKEIHIQRQRRLYLWRRAGGQVVEDEARITNLRIKMQAGIEAKDKQKRKANMSMRRMVRAGIYTGWDDTTPNVALIQKARKGLPNRP 405
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BLAST of mRNA_E_fasciculatus_S2_contig7819.15987.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.790e-28
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = 3 
Query:  366 KGQKRPHTGGEDARDHQKEKKXXPSENNKKAKEQALAAAIYGQ---ENILYKKMGKGGMHAQRQVKLSLWRKAGGQVVEDEDRIARLRAKMQAGIKARDKQKRKAEISMRRMVRAGIYTGWDDLKPNMALIERAREGLP 773
            KGQKRPH G E    H+K+K    S   K A+ +A A+   GQ    N+ + K+GK   HAQR   L+ WR+AGGQVVEDE RIA +R K QAG+K   K++ KAE SMRRM+RAGIYTGWDD  PN+  +  AREGLP
Sbjct:   60 KGQKRPHPGEEGTWGHKKKKNNNLSAERKAAR-RAQASVGNGQPQQRNVPFWKLGKE-THAQRLRSLAQWRRAGGQVVEDEARIANVRRKEQAGMKVSAKERSKAETSMRRMIRAGIYTGWDDTTPNVKKLREAREGLP 196
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7819.15987.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF9_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.380e-27
Identity = 78/141 (55.32%), Postives = 96/141 (68.09%), Query Frame = 3 
Query:  360 QAKGQKRPHTGGEDARDHQKEKKXXPSENNKKAKEQALAAAIYGQ---ENILYKKMGKGGMHAQRQVKLSLWRKAGGQVVEDEDRIARLRAKMQAGIKARDKQKRKAEISMRRMVRAGIYTGWDDLKPNMALIERAREGLP 773
            QAKG KRPH   E A  H+K+K    S   K A ++A A+A  GQ    N+ + K+ K   HAQRQ +L LWR+AGGQVVEDE RIA +R K QAG+K   K++ KAE SMRRM+RAGIYTGWDD  PN+  + +AREGLP
Sbjct:  312 QAKGHKRPHPREEGAWGHKKKKNNNLSAKTKAA-QRAQASAGNGQPQQHNVPFWKLDKE-THAQRQRRLYLWRRAGGQVVEDEARIANVRRKEQAGMKVSAKERSKAETSMRRMIRAGIYTGWDDTTPNVKKLLKAREGLP 450
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7819.15987.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.230e-4162.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.790e-2853.96protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.380e-2755.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7819contigE_fasciculatus_S2_contig7819:104..1159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size972
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.5085084-UTR-E_fasciculatus_S2_contig7819:103..2871696842443.5085084-UTR-E_fasciculatus_S2_contig7819:103..287Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7819 104..287 -
1696842443.53601-UTR-E_fasciculatus_S2_contig7819:560..8591696842443.53601-UTR-E_fasciculatus_S2_contig7819:560..859Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7819 561..859 -
1696842443.5471647-UTR-E_fasciculatus_S2_contig7819:943..11591696842443.5471647-UTR-E_fasciculatus_S2_contig7819:943..1159Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7819 944..1159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.5225666-CDS-E_fasciculatus_S2_contig7819:287..5601696842443.5225666-CDS-E_fasciculatus_S2_contig7819:287..560Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7819 288..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7819.15987.1prot_E_fasciculatus_S2_contig7819.15987.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7819 288..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7819.15987.1

>prot_E_fasciculatus_S2_contig7819.15987.1 ID=prot_E_fasciculatus_S2_contig7819.15987.1|Name=mRNA_E_fasciculatus_S2_contig7819.15987.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=91bp
MGKGGMHAQRQVKLSLWRKAGGQVVEDEDRIARLRAKMQAGIKARDKQKR
KAEISMRRMVRAGIYTGWDDLKPNMALIERAREGLPHRPR*
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mRNA from alignment at E_fasciculatus_S2_contig7819:104..1159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7819.15987.1 ID=mRNA_E_fasciculatus_S2_contig7819.15987.1|Name=mRNA_E_fasciculatus_S2_contig7819.15987.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1056bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7819:104..1159- (Ectocarpus fasciculatus EfasUO2)
GGCTCATCAAGCAAGAAGCAGTGCCCGCGAGAACCAAGGATGAGAATGGT
CGAAACGGGTTTGGGGGCTCCAGGGCAGTCAACGGGTTCATCAAGCAAGA
AGCGTTGCCGGCGAAGGTCAAGCAAGAGAAAGGTGTGGGAGCGGATGAGC
AGGGCGGAGGAAAACACGGGTTCATCAAGCAAGAAGCTTTGCCGGCCAAG
ATCAAGCAAGAGAAAGGTGTGAGAGGGGGTGGTCAGGGCGGAGGAAAACA
CGGGCTTATCAAGCAAGAAGCTTTGCCGGCCAAGATCAAGCAAGAGAAAG
GTGTGAGAGGGGGTGGTCAGGGCGGAGGAAAACACGGGCTTATCAAGCGA
GAAGGAGCGTCGGCCCAGGTCAAGCAAGAGAAACATGGGAAAGGGGGTGG
GGGCGCTAAGGAAGAGCTCAAGTCTGTCAAGGAAGAGACCCCACAGGCCA
AGGGACAAAAGAGGCCTCACACGGGAGGAGAGGACGCTCGGGACCACCAG
AAGGAGAAAAAGAAGAAACCGTCCGAAAACAATAAAAAGGCTAAAGAGCA
AGCGCTGGCTGCTGCCATCTATGGCCAGGAAAACATACTATACAAGAAAA
TGGGCAAGGGGGGGATGCATGCCCAACGACAAGTGAAGCTGTCTCTGTGG
CGAAAGGCGGGTGGGCAAGTGGTCGAAGACGAGGATAGGATCGCCAGACT
TCGAGCCAAAATGCAGGCCGGGATAAAGGCAAGGGACAAGCAGAAGAGGA
AGGCCGAAATATCGATGAGGAGGATGGTAAGGGCGGGGATTTACACCGGC
TGGGACGACCTAAAGCCCAACATGGCACTCATAGAGAGGGCGCGGGAGGG
TCTCCCCCACAGGCCTCGTTAAACTGGGCGACGAGGTTGTGGGTAAGGCG
ACGAATACGGAGCCTCGTGCGCCCGTGTCGAGCGGAACGAACAGGGCTGG
TTGTCTCTCTCATGTAAACGAATGCCTTTGTCGTTAGACCACCATAGACC
TCGCATCCGTAAAATGCCGGGACGGAGCGATACATATGCCGGGTTTTCGC
TGGCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7819:104..1159-

>mRNA_E_fasciculatus_S2_contig7819.15987.1 ID=mRNA_E_fasciculatus_S2_contig7819.15987.1|Name=mRNA_E_fasciculatus_S2_contig7819.15987.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=273bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7819:104..1159- (Ectocarpus fasciculatus EfasUO2)
ATGGGCAAGGGGGGGATGCATGCCCAACGACAAGTGAAGCTGTCTCTGTG
GCGAAAGGCGGGTGGGCAAGTGGTCGAAGACGAGGATAGGATCGCCAGAC
TTCGAGCCAAAATGCAGGCCGGGATAAAGGCAAGGGACAAGCAGAAGAGG
AAGGCCGAAATATCGATGAGGAGGATGGTAAGGGCGGGGATTTACACCGG
CTGGGACGACCTAAAGCCCAACATGGCACTCATAGAGAGGGCGCGGGAGG
GTCTCCCCCACAGGCCTCGTTAA
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