mRNA_E_fasciculatus_S2_contig7811.15980.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7811.15980.1
Unique NamemRNA_E_fasciculatus_S2_contig7811.15980.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: Group (II intron reverse transcriptase/maturase (Fragment) n=2 Tax=Microcystis TaxID=1125 RepID=A0A552LH38_9CHRO)

HSP 1 Score: 53.5 bits (127), Expect = 1.400e-6
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   10 VASPTRQL-LYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
            + +PTR   L  +Q+GKC+ C +  TP+ +  +VDHI+P+SLGG     NL LL   CH  KS  + S
Sbjct:  359 IDTPTRVAKLLKKQQGKCSRCGQYFTPS-DLIEVDHILPLSLGGKDEYKNLQLLHRHCHDDKSASDGS 425          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNH (endonuclease n=1 Tax=Anaerobutyricum hallii TaxID=39488 RepID=A0A415G505_9FIRM)

HSP 1 Score: 52.4 bits (124), Expect = 1.460e-6
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 RKQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKS 195
            RK  +   R+LLY +  GKC  C K+IT   ++ ++DHIIP+S+GG   + NL +  M  ++ K+
Sbjct:   71 RKHFSQEVRKLLYQQAEGKCALCGKKITF--DEMELDHIIPISMGGADEVENLQVCCMPDNRYKA 133          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNH (endonuclease n=1 Tax=Pseudanabaena biceps TaxID=927669 RepID=A0A7Y5MFJ4_9CYAN)

HSP 1 Score: 50.4 bits (119), Expect = 3.680e-6
Identity = 24/59 (40.68%), Postives = 33/59 (55.93%), Query Frame = 1
Query:   34 LYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
            L+  Q GKC +C        + +++DHIIP SLGG    +NLHLL   CH  K+  + S
Sbjct:   33 LFKSQNGKCNHCGLTFRDG-DVWEIDHIIPRSLGGGNGYANLHLLHRHCHDTKTASDGS 90          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNH (endonuclease n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019BE3993)

HSP 1 Score: 50.8 bits (120), Expect = 4.130e-6
Identity = 24/67 (35.82%), Postives = 36/67 (53.73%), Query Frame = 1
Query:    1 RKQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGR 201
            R  +    R L+ ++ R +C YC   +T     F++DH+IP SLGG T   NL L    C++ K+ R
Sbjct:    3 RTHIPQSLRALVAEDARHRCAYCQSAVTIVGMPFEIDHVIPESLGGLTVRENLCLCCSPCNERKACR 69          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: Group (II intron reverse transcriptase/maturase n=2 Tax=Nostoc TaxID=1177 RepID=A0A1U7I6H6_9NOSO)

HSP 1 Score: 51.2 bits (121), Expect = 9.280e-6
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    4 KQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
            K++ S   ++L+ +Q+GKC YC    T   +  ++DHIIP+SLGG     N+  L   CH  K+ ++ S
Sbjct:  509 KEIPSLLAKILH-KQKGKCAYCGLTFTLEDQ-IELDHIIPISLGGKRKFDNIQALHRHCHDQKTAKDGS 575          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNH (endonuclease n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI001BA70A3C)

HSP 1 Score: 50.8 bits (120), Expect = 1.150e-5
Identity = 24/75 (32.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    1 RKQVASPTRQLLYDEQRGKCTYCDKEITP-----NPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
            RK + +  ++ +Y   RG+C YC+K++T      N E++D  HI+P++  G   ++N+ LL   C++ KSG++++
Sbjct:  204 RKNIPNWVKKAVYYRDRGRCVYCNKDLTGLVSIFNKENYD--HIVPLNEYGFNDVTNIQLLCRKCNEDKSGKQKN 276          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: RNA-directed (DNA polymerase n=1 Tax=Oscillatoria nigro-viridis PCC 7112 TaxID=179408 RepID=K9VG06_9CYAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    4 KQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
            K++ S   + L+ +Q+GKC  CD   T   +  ++DHI+P+SLGG     N+  L   CH  K+ R+ S
Sbjct:  509 KEIPSLLAKTLH-KQKGKCAQCDLTFTTEDQ-IELDHILPISLGGKKKFENIQALHRHCHDQKTARDGS 575          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: HNHc (domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9SV00_9ZZZZ)

HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5
Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 1
Query:    4 KQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAK 192
            K+ A    Q+L+ EQ+G C +C K +     DF +DH +P+  GG  C++N+ L    C+ +K
Sbjct:  117 KKTALEIEQMLWQEQKGLCVFCKKNM--ERRDFHMDHYVPLIRGGKHCITNVVLTCSACNLSK 177          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: Group (II intron reverse transcriptase/maturase n=2 Tax=Pseudanabaena biceps TaxID=927669 RepID=A0A7Y5I9U9_9CYAN)

HSP 1 Score: 50.4 bits (119), Expect = 1.720e-5
Identity = 24/59 (40.68%), Postives = 33/59 (55.93%), Query Frame = 1
Query:   34 LYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
            L+  Q GKC +C        + +++DHIIP SLGG    +NLHLL   CH  K+  + S
Sbjct:  391 LFKSQNGKCNHCGLTFRDG-DVWEIDHIIPRSLGGGNGYANLHLLHRHCHDTKTASDGS 448          
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Match: Group (II intron reverse transcriptase/maturase n=1 Tax=Scytonema millei VB511283 TaxID=1245923 RepID=A0A1D2P5R1_9CYAN)

HSP 1 Score: 50.4 bits (119), Expect = 1.740e-5
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    4 KQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCLSNLHLLSMTCHKAKSGRERS 210
            K++ S   ++L+ +Q+GKC +C    T   +  ++DHIIP+SLGG     N+  L   CH  K+ R+ S
Sbjct:  509 KEIPSLLAKILH-KQKGKCGHCGLTFTTEDQ-IELDHIIPISLGGKRKFDNIQALHRHCHDQKTARDGS 575          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7811.15980.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
Group1.400e-642.65II intron reverse transcriptase/maturase (Fragment... [more]
HNH1.460e-638.46endonuclease n=1 Tax=Anaerobutyricum hallii TaxID=... [more]
HNH3.680e-640.68endonuclease n=1 Tax=Pseudanabaena biceps TaxID=92... [more]
HNH4.130e-635.82endonuclease n=1 Tax=Planctomycetaceae bacterium T... [more]
Group9.280e-636.23II intron reverse transcriptase/maturase n=2 Tax=N... [more]
HNH1.150e-532.00endonuclease n=1 Tax=Bacillus cereus TaxID=1396 Re... [more]
RNA-directed1.270e-536.23DNA polymerase n=1 Tax=Oscillatoria nigro-viridis ... [more]
HNHc1.340e-534.92domain-containing protein n=1 Tax=marine sediment ... [more]
Group1.720e-540.68II intron reverse transcriptase/maturase n=2 Tax=P... [more]
Group1.740e-536.23II intron reverse transcriptase/maturase n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7811contigE_fasciculatus_S2_contig7811:1295..1504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842443.0790951-CDS-E_fasciculatus_S2_contig7811:1294..15041696842443.0790951-CDS-E_fasciculatus_S2_contig7811:1294..1504Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7811 1295..1504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7811.15980.1prot_E_fasciculatus_S2_contig7811.15980.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7811 1295..1504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7811.15980.1

>prot_E_fasciculatus_S2_contig7811.15980.1 ID=prot_E_fasciculatus_S2_contig7811.15980.1|Name=mRNA_E_fasciculatus_S2_contig7811.15980.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=70bp
RKQVASPTRQLLYDEQRGKCTYCDKEITPNPEDFDVDHIIPVSLGGPTCL
SNLHLLSMTCHKAKSGRERS
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mRNA from alignment at E_fasciculatus_S2_contig7811:1295..1504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7811.15980.1 ID=mRNA_E_fasciculatus_S2_contig7811.15980.1|Name=mRNA_E_fasciculatus_S2_contig7811.15980.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7811:1295..1504- (Ectocarpus fasciculatus EfasUO2)
CGAAAGCAGGTAGCCTCTCCAACGAGACAGCTTCTTTACGATGAGCAGCG CGGCAAGTGCACCTATTGCGACAAGGAAATCACGCCTAACCCGGAAGATT TTGACGTGGATCATATAATTCCAGTCTCCCTGGGAGGCCCGACATGCCTG TCGAACCTTCATCTTCTAAGTATGACGTGCCATAAAGCGAAATCGGGCCG TGAGCGATCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7811:1295..1504-

>mRNA_E_fasciculatus_S2_contig7811.15980.1 ID=mRNA_E_fasciculatus_S2_contig7811.15980.1|Name=mRNA_E_fasciculatus_S2_contig7811.15980.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7811:1295..1504- (Ectocarpus fasciculatus EfasUO2)
CGAAAGCAGGTAGCCTCTCCAACGAGACAGCTTCTTTACGATGAGCAGCG
CGGCAAGTGCACCTATTGCGACAAGGAAATCACGCCTAACCCGGAAGATT
TTGACGTGGATCATATAATTCCAGTCTCCCTGGGAGGCCCGACATGCCTG
TCGAACCTTCATCTTCTAAGTATGACGTGCCATAAAGCGAAATCGGGCCG
TGAGCGATCT
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