mRNA_E_fasciculatus_S2_contig7810.15978.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7810.15978.1
Unique NamemRNA_E_fasciculatus_S2_contig7810.15978.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Vacuolar (proton pump subunit B n=3 Tax=PX clade TaxID=569578 RepID=D8LCT6_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.810e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ
Sbjct:  372 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 439
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BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P9L4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.980e-32
Identity = 55/68 (80.88%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIGEGMTR+DH +VSNQLYA YA GKDVMAMKAVVGEEALS+EDHL+L+F+E+FE KF++QGPYQ
Sbjct:  108 MKSAIGEGMTRDDHGSVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGKFIAQGPYQ 175
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BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Vacuolar (proton pump subunit B n=21 Tax=Bacillariophyta TaxID=2836 RepID=B8C0L1_THAPS)

HSP 1 Score: 120 bits (300), Expect = 2.220e-30
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIGEGMTR+DH +VSNQLYA YA GKDV+AMKAVVGEEALS+EDHL+L+F+E+FE+KFVSQGPYQ
Sbjct:  387 MKSAIGEGMTRDDHGSVSNQLYASYAMGKDVLAMKAVVGEEALSMEDHLYLSFLERFESKFVSQGPYQ 454
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Vacuolar (proton pump subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY44_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.810e-29
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIG GMTR+DH  VSNQLYA YAQGKDV+AMKAVVGEEALSLEDHL+L FV+KFE KF++QGPYQ
Sbjct:  374 MKSAIGVGMTRDDHDCVSNQLYASYAQGKDVLAMKAVVGEEALSLEDHLYLQFVDKFETKFIAQGPYQ 441
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BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BPA0_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.780e-29
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIGEGMTR+DH +VSNQLYA YAQGKDV+AMKAVVGEEAL+ ED L+L F EKFE+KF++QGPYQ
Sbjct:  250 MKSAIGEGMTRDDHGSVSNQLYASYAQGKDVLAMKAVVGEEALTQEDMLYLKFTEKFESKFIAQGPYQ 317
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Vacuolar (proton pump subunit B n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAE7_PYTIN)

HSP 1 Score: 115 bits (289), Expect = 8.260e-29
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIGEGMTR+DH  VSNQLYA YA GKDV AMKAVVGEEALSLEDHL+L F EKFE KF++QGPYQ
Sbjct:  378 MKSAIGEGMTRDDHSAVSNQLYASYATGKDVQAMKAVVGEEALSLEDHLYLKFTEKFENKFIAQGPYQ 445
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BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Vacuolar (proton pump subunit B n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FRS5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.590e-28
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIG+GMTR+DH  VSNQLYA YA GKDV AMKAVVGEEALS+EDHL+L F +KFEAKF++QGPYQ
Sbjct:  390 MKSAIGDGMTRDDHSAVSNQLYASYATGKDVQAMKAVVGEEALSMEDHLYLKFTDKFEAKFIAQGPYQ 457
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BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Vacuolar (proton pump subunit B n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YNM8_DIALT)

HSP 1 Score: 114 bits (285), Expect = 2.800e-28
Identity = 54/68 (79.41%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIGEGMTR+DH +VSNQ+YA YA GKDVMAMKAVVGEEALS EDHL+L F++KFE+KFV+QGPY+
Sbjct:  395 MKSAIGEGMTRKDHGDVSNQMYANYAIGKDVMAMKAVVGEEALSSEDHLYLEFLDKFESKFVNQGPYE 462
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Vacuolar (proton pump subunit B n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y5A7_AURAN)

HSP 1 Score: 113 bits (283), Expect = 4.770e-28
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIGEGMTR+DH  VSNQLYA YA G+DV+AMKAVVGEEALSL+DHL+L F+++FE KFV+QGPYQ
Sbjct:  366 MKSAIGEGMTRDDHGAVSNQLYASYAMGRDVLAMKAVVGEEALSLDDHLYLAFLDRFEGKFVAQGPYQ 433
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Match: Vacuolar (proton pump subunit B n=39 Tax=Oomycota TaxID=4762 RepID=K3X8G8_GLOUD)

HSP 1 Score: 113 bits (283), Expect = 5.140e-28
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLFLNFVEKFEAKFVSQGPYQ 204
            MKSAIGEGMTR+DH  VSNQLYA YA GKDV AMKAVVGEEALSLEDHL+L F + FE KF++QGPYQ
Sbjct:  381 MKSAIGEGMTRDDHSAVSNQLYASYATGKDVQAMKAVVGEEALSLEDHLYLKFADNFEGKFIAQGPYQ 448
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7810.15978.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Vacuolar3.810e-38100.00proton pump subunit B n=3 Tax=PX clade TaxID=56957... [more]
Hypothetical1.980e-3280.88protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Vacuolar2.220e-3082.35proton pump subunit B n=21 Tax=Bacillariophyta Tax... [more]
Vacuolar3.810e-2982.35proton pump subunit B n=1 Tax=Fibrocapsa japonica ... [more]
Hypothetical6.780e-2979.41protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Vacuolar8.260e-2982.35proton pump subunit B n=1 Tax=Pythium insidiosum T... [more]
Vacuolar1.590e-2879.41proton pump subunit B n=9 Tax=Aphanomyces astaci T... [more]
Vacuolar2.800e-2879.41proton pump subunit B n=2 Tax=Diacronema lutheri T... [more]
Vacuolar4.770e-2877.94proton pump subunit B n=2 Tax=Pelagomonadales TaxI... [more]
Vacuolar5.140e-2879.41proton pump subunit B n=39 Tax=Oomycota TaxID=4762... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7810contigE_fasciculatus_S2_contig7810:2467..3484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score140.6
Seed ortholog evalue2.7e-31
Seed eggNOG ortholog2880.D8LCT6
Preferred nameATP6V1B1
Model size204
KEGG koko:K02147
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001503,GO:0001666,GO:0001678,GO:0001726,GO:0003008,GO:0003674,GO:0003779,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0005902,GO:0005903,GO:0005911,GO:0006355,GO:0006357,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006874,GO:0006875,GO:0006885,GO:0006914,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0007035,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007423,GO:0007588,GO:0007600,GO:0007605,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008286,GO:0008324,GO:0009056,GO:0009268,GO:0009405,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009757,GO:0009790,GO:0009887,GO:0009889,GO:0009894,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010038,GO:0010182,GO:0010243,GO:0010255,GO:0010468,GO:0010494,GO:0010506,GO:0010556,GO:0010639,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016241,GO:0016323,GO:0016324,GO:0016328,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019725,GO:0019829,GO:0022603,GO:0022607,GO:0022610,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030029,GO:0030036,GO:0030054,GO:0030139,GO:0030641,GO:0030659,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0031090,GO:0031164,GO:0031224,GO:0031252,GO:0031323,GO:0031326,GO:0031329,GO:0031333,GO:0031410,GO:0031982,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033500,GO:0033572,GO:0034220,GO:0034284,GO:0034622,GO:0035770,GO:0036176,GO:0036293,GO:0036442,GO:0036464,GO:0042221,GO:0042470,GO:0042471,GO:0042472,GO:0042592,GO:0042593,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0042995,GO:0043067,GO:0043068,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043248,GO:0043254,GO:0043434,GO:0043492,GO:0043583,GO:0043933,GO:0044085,GO:0044087,GO:0044232,GO:0044237,GO:0044248,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0044877,GO:0045177,GO:0045184,GO:0045335,GO:0045851,GO:0046686,GO:0046961,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048770,GO:0048839,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050877,GO:0050896,GO:0050954,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051452,GO:0051453,GO:0051493,GO:0051494,GO:0051693,GO:0051704,GO:0051716,GO:0055044,GO:0055065,GO:0055067,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0060255,GO:0061572,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070482,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072503,GO:0072507,GO:0072512,GO:0080090,GO:0090066,GO:0090596,GO:0090662,GO:0097435,GO:0097708,GO:0098588,GO:0098590,GO:0098609,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0098858,GO:0098862,GO:0099131,GO:0099132,GO:0110053,GO:0120025,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1901880,GO:1902600,GO:1902903,GO:1902904,GO:1902906,GO:1903506,GO:1990816,GO:1990904,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG1156@1,KOG1351@2759
Cds size204
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842442.959787-CDS-E_fasciculatus_S2_contig7810:2466..25891696842442.959787-CDS-E_fasciculatus_S2_contig7810:2466..2589Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7810 2467..2589 -
1696842442.9720604-CDS-E_fasciculatus_S2_contig7810:3403..34841696842442.9720604-CDS-E_fasciculatus_S2_contig7810:3403..3484Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7810 3404..3484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7810.15978.1prot_E_fasciculatus_S2_contig7810.15978.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7810 2467..3484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7810.15978.1

>prot_E_fasciculatus_S2_contig7810.15978.1 ID=prot_E_fasciculatus_S2_contig7810.15978.1|Name=mRNA_E_fasciculatus_S2_contig7810.15978.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
MKSAIGEGMTREDHWNVSNQLYAMYAQGKDVMAMKAVVGEEALSLEDHLF
LNFVEKFEAKFVSQGPYQ
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mRNA from alignment at E_fasciculatus_S2_contig7810:2467..3484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7810.15978.1 ID=mRNA_E_fasciculatus_S2_contig7810.15978.1|Name=mRNA_E_fasciculatus_S2_contig7810.15978.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1018bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7810:2467..3484- (Ectocarpus fasciculatus EfasUO2)
ATGAAGTCGGCCATCGGGGAGGGAATGACCCGGGAGGACCACTGGAACGT
GTCCAACCAGCTGTACGCCATGTATGCTCAGGTGAGCTACTACTGCTGCA
CCGCCAAGCTGTACATACGACACAAGATTACTAGGAAAAACAAAGATACA
CACAGAAAGACTACCCGTTCGAGGTACATATAACCACAATCGAAGGGGAT
GTGTTGAAGTCTTTACAGTGAGTGGAGGGAAACCAGCTGGGTACTTGACT
TATTTCGAGTCTGTGTAAGATGAACACCCCCCACTACGCATAGCATGTAG
GCGACCAACACACTTTGGGCGGCACGCAATCACTCACCCGACGGTATTAT
AGTATGTTCACACTAGCAGCCCGAACACGAAAGACCTACAATACTCTCCG
ATTGGTTCATAGGGCGGAATATGAGATACCCCCCCCACCCCGCTCTCACC
AACAGCATGCCCGGTTATCTTTTCTTGGAGGTAAAAAATATCATCATCAC
CGGGGATAAATACAGCAGCCGTCGATCTGGTACTGTACTGTTACCTCTTT
TGTTTGGTTTAAATTTGGTGCGTCCAAGGTAAACCTCAAGGTAAACCTCG
AACCCGTTTTCTCGGTTTCCCCGCCTCACCCGCCTTGTGCGTTCTTCTCT
TCTCCGGTGCGGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCGCCGCCGCCCNNNNNNNNNNAAACC
CCGCACCCCTTTTTCTCTTTCTCCCCCCCCCCCCCCCCCGTGCGTTTTTT
CTTTTCTCCGGCGGGGGCCCCCCCCCCCCCCCCCCTCCCCCCCCTTCGAT
GCTCTCGCTTTTCACCACGCTGCGGCGGCGGCGGCGACGACGTAGGGCAA
GGACGTGATGGCCATGAAGGCAGTTGTGGGTGAGGAGGCCCTCAGCCTGG
AGGACCACCTTTTCCTAAACTTCGTCGAGAAGTTCGAGGCCAAGTTCGTT
TCCCAGGGACCCTACCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7810:2467..3484-

>mRNA_E_fasciculatus_S2_contig7810.15978.1 ID=mRNA_E_fasciculatus_S2_contig7810.15978.1|Name=mRNA_E_fasciculatus_S2_contig7810.15978.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7810:2467..3484- (Ectocarpus fasciculatus EfasUO2)
ATGAAGTCGGCCATCGGGGAGGGAATGACCCGGGAGGACCACTGGAACGT
GTCCAACCAGCTGTACGCCATGTATGCTCAGGGCAAGGACGTGATGGCCA
TGAAGGCAGTTGTGGGTGAGGAGGCCCTCAGCCTGGAGGACCACCTTTTC
CTAAACTTCGTCGAGAAGTTCGAGGCCAAGTTCGTTTCCCAGGGACCCTA
CCAG
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