mRNA_E_fasciculatus_S2_contig7804.15971.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7804.15971.1
Unique NamemRNA_E_fasciculatus_S2_contig7804.15971.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7804.15971.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR74_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 4.680e-36
Identity = 238/335 (71.04%), Postives = 249/335 (74.33%), Query Frame = 1 
Query:   13 KCPRDGCGKEPSFGLAGSRTAQFCAQHAEDGMVNVRGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGKGSKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRNRVFCAKHAPDGMVILGKAGKPKQGGAHTGGKRRASGEMGSGRGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVQLAPPSAAALEMTAIPEPLVPTTTSALSALPPAPIVLPPAPTAPFQQHGQPQGQQQSSLP 1017
            +C    C   P+FG+  ++  QFC  HA +GMV+V  K                                                    FDGKGSKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRNRVFCAKHAP+GMVILGKAGKPKQGG HTGGKRRASGEMGSGRGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    Q    PPSA  +E+TAIP+PLVPTT SALSALPPAPIVLPPAPTAPFQQH QP GQ  S  P
Sbjct:    8 RCEHPNCNTRPAFGVPFTKKVQFCRPHALEGMVDVSTKSCGTHGCFKRPTFG--------------------------------------FDGKGSKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRNRVFCAKHAPEGMVILGKAGKPKQGGTHTGGKRRASGEMGSGRGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----QAHPTPPSA--MEITAIPQPLVPTT-SALSALPPAPIVLPPAPTAPFQQHSQPPGQHHSPSP 297
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BLAST of mRNA_E_fasciculatus_S2_contig7804.15971.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF92_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.790e-27
Identity = 209/233 (89.70%), Postives = 213/233 (91.42%), Query Frame = 1 
Query:  283 FDGKGSKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRNRVFCAKHAPDGMVILGKAGKPKQGGAHTGGKRRASGEMGSGRGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVQLAPPSAAALEMTAIPEPLVPTTTSALSALPPAPIVLPPAPTAPFQQH 981
            FDGKGSKNG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRNRVFCAKHAP+GMVILGKAGKPKQGG HTGGKRRASGEMGSGRGSR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XX     PPSAAA+E+TAIP+PLVPTTTSALSALPPAPI         FQQH
Sbjct:   37 FDGKGSKNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRNRVFCAKHAPEGMVILGKAGKPKQGGTHTGGKRRASGEMGSGRGSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAHXXXXXXTPPSAAAMEITAIPQPLVPTTTSALSALPPAPIXXXXXXXXLFQQH 269
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7804.15971.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.270e-8
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 MPRTKCPRDGCGKEPSFGLAGSRTAQFCAQHAEDGMVNVRGKR 129
            MPRTKCP  GCGKEPSFG+AG+R+A++C  HA+   VNVR  R
Sbjct:    1 MPRTKCPVQGCGKEPSFGVAGTRSAKWCRVHADPSHVNVRANR 43
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7804.15971.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
EsV-1-74.680e-3671.04n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized2.790e-2789.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.270e-865.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7804contigE_fasciculatus_S2_contig7804:4712..7218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1344
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-08_005120.1
Cds size1344
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842442.2438183-CDS-E_fasciculatus_S2_contig7804:4711..48971696842442.2438183-CDS-E_fasciculatus_S2_contig7804:4711..4897Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7804 4712..4897 +
1696842442.263815-CDS-E_fasciculatus_S2_contig7804:5439..56761696842442.263815-CDS-E_fasciculatus_S2_contig7804:5439..5676Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7804 5440..5676 +
1696842442.2768495-CDS-E_fasciculatus_S2_contig7804:6297..72181696842442.2768495-CDS-E_fasciculatus_S2_contig7804:6297..7218Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7804 6298..7218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7804.15971.1prot_E_fasciculatus_S2_contig7804.15971.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7804 4712..7218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7804.15971.1

>prot_E_fasciculatus_S2_contig7804.15971.1 ID=prot_E_fasciculatus_S2_contig7804.15971.1|Name=mRNA_E_fasciculatus_S2_contig7804.15971.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=448bp
MPRTKCPRDGCGKEPSFGLAGSRTAQFCAQHAEDGMVNVRGKRCEHPNCN
TRPAFGVPFTKKVQFCRPHALEGMVDVSTKSCGTHGCFKRPTFGFDGKGS
KNGEFCAQHAQEGMVDIVSKRCIFEGCTTKRSFGVDGHRKNAKYCGKHAE
PGMVDVISKKCAHGGCLKHPSFGLEGTRNRVFCAKHAPDGMVILGKAGKP
KQGGAHTGGKRRASGEMGSGRGSRRRSAGGGGGGGEVDNEPPMDWAVLQS
AAAAAYISKMVPPPVVPPPPPPPPPPPQVQLAPPSAAALEMTAIPEPLVP
TTTSALSALPPAPIVLPPAPTAPFQQHGQPQGQQQSSLPPPLSPLPQAPL
APQAPPAPQLPPAPQLPPAPQLPTAPQPPLAPQAPPAPPAPPAPPAPPAP
PAPQLPPAPHLPPAPQLPPAPQAPPAQTPAPPAPSAPQAPLAPHAPPA
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mRNA from alignment at E_fasciculatus_S2_contig7804:4712..7218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7804.15971.1 ID=mRNA_E_fasciculatus_S2_contig7804.15971.1|Name=mRNA_E_fasciculatus_S2_contig7804.15971.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2507bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7804:4712..7218+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTCGCACCAAGTGCCCGCGGGATGGTTGCGGCAAGGAGCCATCGTT
TGGGCTCGCGGGAAGCCGGACCGCCCAGTTCTGCGCGCAGCACGCGGAGG
ACGGGATGGTCAACGTCCGGGGCAAGCGGTGTGAGCACCCGAACTGCAAC
ACGAGGCCGGCCTTCGGCGTGCCGTTCACCAAGAAGGTGCGTACTGCTAT
TGTTGTCGTTGTTGTTGTCGTCTTGACGTTATAAGTTATAAACCGTTCCG
GTCTCTCTGCCCAGTGACTTCATCTGTCCGCACCGCTTGACGTGTGTCGA
TTCCCGTGGGCGCCGGCTAAATTGCCCTAAAAAAGGTACTTCAATGAAAC
GAACCCGAAGGTAACATGTACACGATATCCTCCAAAATATTAAAATAAAT
TAATGAAACACACCAAATGAAACACACCCATACTCTTTGTGTGATGTCAA
GACCAACAGTCAGTCCGCACAGCAAGACTCTGAGGAAATTGCAACCAATT
GGTACGTGAAAAATACTACGCGTGTAGAAATCTCACATAGGCTGGTGTCA
TTACTACGTGTGTAGACTTCCCGACCCTTGCAAGTGGTACCTAGCCCTCA
CGCGGGCGTGCGATCACCAAACCTCTGAAGCATTTTCGCAACGACACCCT
TGCTCATCCGGTCTGTGTATCTCTTGCTCTTTCTCCTTCTGTTCTCCCTC
GTTCGTCACGATACTGCTGTACCCGCAGGTGCAATTCTGCAGGCCTCACG
CTCTAGAGGGAATGGTGGACGTCTCCACCAAGAGCTGCGGGACACACGGG
TGCTTCAAGCGGCCGACCTTCGGCTTCGACGGCAAGGGCAGCAAGAACGG
GGAGTTCTGCGCGCAGCACGCGCAGGAGGGGATGGTGGACATCGTCAGCA
AGCGCTGCATCTTCGAAGGCTGCACCACGAAGCGGTCGTTCGGAGTGGAC
GGGCACCGTAAGAACGTGAGCGCGCTAACGGCCTACCTACACCCGGTTGT
AGTGTTGCGCTCTGTATCGACCGTGCTAACCGACCGATCAAATAAAAATG
CTTCAGTCTCAGTGCCGTTGAAAACAGAAATGCTTCAAAATATGGTGCAT
GATTGTTGGTTTTGCTGTCAGTGCTGTTGTCGAGTTGACGGTGCTGACAC
ATCCAAAAAGTCGTTGGTCTCCATGCGGGATATCTTAAACGTAACTTACC
CTGTTCCATCCCACCCGGAAAGGAATATTTGTTGGTGGTCACAGACTGAA
CAAGACTACGGTTGAGAATAAAGTTCGTTGCTTGCTTTTAGAACAGAAGA
TAACACACCAAAAAACGCAGGTCGCTCAAGACATCACGCTCAATTCTGTT
GCTATCCCTGTTTCGGCCTTGTCTAAGCTTTTTGCCCGTGCCTCCTCCGC
TTCGCTCTCTACCTGAAGTACTTGACCCTCAGTTTACAAACCAAATCTGA
GCTATTTATAGTGTTTTCGTCATGCATTGTTAGATAGCACCCCCACCCCA
TCGCGCCCTACGAGGCCTGGCGAGACTACGCACGGCTTTACCTCAGTCAC
CCCCACCTTCCCCCCCCCCCTCCCCCCACCGAATAGGCCAAGTACTGCGG
CAAGCACGCGGAACCCGGCATGGTCGACGTAATCAGCAAGAAGTGCGCCC
ACGGAGGCTGTCTCAAGCACCCGTCATTCGGCCTCGAGGGGACCCGCAAC
CGGGTGTTCTGCGCCAAGCACGCGCCGGACGGGATGGTGATCCTGGGCAA
GGCGGGCAAGCCCAAGCAGGGCGGCGCGCACACCGGGGGAAAGCGCAGGG
CCTCCGGAGAGATGGGTTCCGGGCGAGGGTCCCGCCGGAGGTCTGCCGGC
GGCGGTGGCGGCGGCGGCGAGGTGGACAACGAGCCTCCGATGGACTGGGC
CGTGCTCCAGTCGGCGGCGGCGGCGGCGTACATCAGCAAGATGGTGCCCC
CGCCGGTGGTGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCAGGTG
CAGCTGGCACCGCCTTCGGCGGCGGCGCTGGAGATGACGGCTATACCGGA
GCCCTTGGTGCCGACGACGACTTCCGCGCTGTCGGCGCTTCCCCCAGCCC
CGATCGTGCTGCCCCCGGCCCCAACGGCGCCGTTCCAGCAGCACGGCCAG
CCGCAGGGGCAGCAACAGTCGTCTCTGCCGCCGCCGCTGTCGCCACTGCC
GCAGGCCCCCCTGGCGCCGCAGGCTCCCCCGGCGCCGCAGCTCCCCCCGG
CGCCACAGCTCCCCCCGGCGCCACAGCTCCCCACGGCGCCACAGCCCCCC
TTGGCGCCGCAGGCGCCCCCTGCACCGCCTGCACCGCCGGCGCCCCCTGC
ACCGCCTGCACCGCCGGCGCCACAGCTCCCCCCGGCGCCACATCTCCCCC
CGGCGCCACAGCTCCCCCCGGCCCCGCAGGCGCCCCCGGCCCAGACCCCG
GCCCCGCCGGCACCTTCGGCCCCGCAGGCGCCCTTGGCCCCGCACGCCCC
TCCCGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7804:4712..7218+

>mRNA_E_fasciculatus_S2_contig7804.15971.1 ID=mRNA_E_fasciculatus_S2_contig7804.15971.1|Name=mRNA_E_fasciculatus_S2_contig7804.15971.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1344bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7804:4712..7218+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTCGCACCAAGTGCCCGCGGGATGGTTGCGGCAAGGAGCCATCGTT
TGGGCTCGCGGGAAGCCGGACCGCCCAGTTCTGCGCGCAGCACGCGGAGG
ACGGGATGGTCAACGTCCGGGGCAAGCGGTGTGAGCACCCGAACTGCAAC
ACGAGGCCGGCCTTCGGCGTGCCGTTCACCAAGAAGGTGCAATTCTGCAG
GCCTCACGCTCTAGAGGGAATGGTGGACGTCTCCACCAAGAGCTGCGGGA
CACACGGGTGCTTCAAGCGGCCGACCTTCGGCTTCGACGGCAAGGGCAGC
AAGAACGGGGAGTTCTGCGCGCAGCACGCGCAGGAGGGGATGGTGGACAT
CGTCAGCAAGCGCTGCATCTTCGAAGGCTGCACCACGAAGCGGTCGTTCG
GAGTGGACGGGCACCGTAAGAACGCCAAGTACTGCGGCAAGCACGCGGAA
CCCGGCATGGTCGACGTAATCAGCAAGAAGTGCGCCCACGGAGGCTGTCT
CAAGCACCCGTCATTCGGCCTCGAGGGGACCCGCAACCGGGTGTTCTGCG
CCAAGCACGCGCCGGACGGGATGGTGATCCTGGGCAAGGCGGGCAAGCCC
AAGCAGGGCGGCGCGCACACCGGGGGAAAGCGCAGGGCCTCCGGAGAGAT
GGGTTCCGGGCGAGGGTCCCGCCGGAGGTCTGCCGGCGGCGGTGGCGGCG
GCGGCGAGGTGGACAACGAGCCTCCGATGGACTGGGCCGTGCTCCAGTCG
GCGGCGGCGGCGGCGTACATCAGCAAGATGGTGCCCCCGCCGGTGGTGCC
GCCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCAGGTGCAGCTGGCACCGC
CTTCGGCGGCGGCGCTGGAGATGACGGCTATACCGGAGCCCTTGGTGCCG
ACGACGACTTCCGCGCTGTCGGCGCTTCCCCCAGCCCCGATCGTGCTGCC
CCCGGCCCCAACGGCGCCGTTCCAGCAGCACGGCCAGCCGCAGGGGCAGC
AACAGTCGTCTCTGCCGCCGCCGCTGTCGCCACTGCCGCAGGCCCCCCTG
GCGCCGCAGGCTCCCCCGGCGCCGCAGCTCCCCCCGGCGCCACAGCTCCC
CCCGGCGCCACAGCTCCCCACGGCGCCACAGCCCCCCTTGGCGCCGCAGG
CGCCCCCTGCACCGCCTGCACCGCCGGCGCCCCCTGCACCGCCTGCACCG
CCGGCGCCACAGCTCCCCCCGGCGCCACATCTCCCCCCGGCGCCACAGCT
CCCCCCGGCCCCGCAGGCGCCCCCGGCCCAGACCCCGGCCCCGCCGGCAC
CTTCGGCCCCGCAGGCGCCCTTGGCCCCGCACGCCCCTCCCGCA
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