mRNA_E_fasciculatus_S2_contig779.15958.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig779.15958.1
Unique NamemRNA_E_fasciculatus_S2_contig779.15958.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig779.15958.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig779contigE_fasciculatus_S2_contig779:22409..26537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1821
Hectar predicted targeting categoryother localisation
Exons6
Cds size1821
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig779.15958.1prot_E_fasciculatus_S2_contig779.15958.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig779 22409..26537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842440.8476486-CDS-E_fasciculatus_S2_contig779:22408..228401696842440.8476486-CDS-E_fasciculatus_S2_contig779:22408..22840Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig779 22409..22840 +
1696842440.8594666-CDS-E_fasciculatus_S2_contig779:23017..232931696842440.8594666-CDS-E_fasciculatus_S2_contig779:23017..23293Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig779 23018..23293 +
1696842440.869959-CDS-E_fasciculatus_S2_contig779:23930..240881696842440.869959-CDS-E_fasciculatus_S2_contig779:23930..24088Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig779 23931..24088 +
1696842440.8787785-CDS-E_fasciculatus_S2_contig779:24584..247081696842440.8787785-CDS-E_fasciculatus_S2_contig779:24584..24708Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig779 24585..24708 +
1696842440.8911748-CDS-E_fasciculatus_S2_contig779:25028..251381696842440.8911748-CDS-E_fasciculatus_S2_contig779:25028..25138Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig779 25029..25138 +
1696842440.9002018-CDS-E_fasciculatus_S2_contig779:25816..265371696842440.9002018-CDS-E_fasciculatus_S2_contig779:25816..26537Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig779 25817..26537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig779.15958.1

>prot_E_fasciculatus_S2_contig779.15958.1 ID=prot_E_fasciculatus_S2_contig779.15958.1|Name=mRNA_E_fasciculatus_S2_contig779.15958.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=607bp
MNYNIEDDSGSIYNIDNSSSSCSCGSRGSNRPDRSLAAFEHCSQPTEAAR
ISFSSSAHHSDDHQGAVDPPRCCSPSRWPTPQSVRSSSGYLFYAREAGDS
PGGSSPERTPIEGRNQRSPRRGRGRRWRRRQPSNRQNRGQDWPAHSFPQE
GGATPPKTARERGSQHCFSGPNRGWNVSNSAGGNNLSNGLPVLVGDIRGA
MVAVWLAWGVRIDAARETLRRQERRLQAIHRAEVAKLERSTHPKACTGDN
GPNRITPRVLDCIVREAALRQIGESELANGVRREALQASEQDSVRRKYAW
RYRRPMLESGRRQRQGAELLALRNAAESLEAQLVRARDEAVRLLQLHLSR
AQRIISSGVARTAEIRRRRPVGASPVLREADLVKLGNVLLHAQETASCSI
GRALQTNGDESASASSKMLDDGVHGNAYRSTLADTAARCLWCNAATADTG
KLLHPFGNGAGFQATMTYNRIRTSTTTARHHCEVLQQPQRRLARDIQYRT
SSRHRPHHHKPREDDGIEQGSGMHGSCDQTPPNLAAALEHSSSPDKPLSA
REHVLLEQDGGDDTTPGAPFCSWGCARKWNDRFSPLQTRHERGLRIDIAA
GRVVRR*
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mRNA from alignment at E_fasciculatus_S2_contig779:22409..26537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig779.15958.1 ID=mRNA_E_fasciculatus_S2_contig779.15958.1|Name=mRNA_E_fasciculatus_S2_contig779.15958.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4129bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig779:22409..26537+ (Ectocarpus fasciculatus EfasUO2)
ATGAACTACAACATCGAAGACGACAGCGGCAGTATCTATAACATCGACAA
CAGCAGCAGCAGCTGCAGCTGCGGCAGCAGAGGCAGCAACAGACCCGACA
GGTCGTTGGCGGCCTTTGAACACTGTAGCCAACCCACAGAGGCGGCGAGA
ATTTCGTTCTCCTCTTCCGCCCATCATAGCGACGATCACCAGGGTGCGGT
AGACCCGCCGCGATGTTGTTCACCCTCTCGCTGGCCGACCCCGCAGTCTG
TTCGGTCCTCCAGCGGGTACCTGTTCTATGCCCGCGAAGCCGGCGATTCT
CCCGGCGGCAGCTCCCCTGAGCGAACACCAATTGAAGGAAGGAACCAGCG
GTCGCCACGGCGGGGGCGGGGGCGGCGGTGGCGACGACGACAACCAAGCA
ACCGACAGAATAGAGGGCAGGATTGGCCAGCGGTGCCGTCGTGCAAGAAT
GAGGTCGGAACAACTGCCGTTGAAAACATCCCTCGCGAGGAGACCGACGA
CATATCTTGCTCCAAAGTTGGGCGTGCAGGCGGAGCTGGGGACTTGGCTC
TCACCGAGCGTACAGTCAACCCGAGTCCCAATCATCATCAGACCGCCACC
GGTAAAAAGCACTCTTTCCCGCAAGAAGGAGGTGCGACACCGCCGAAGAC
CGCGCGTGAACGTGGTTCTCAACACTGCTTCAGTGGCCCCAACAGAGGAT
GGAACGTCTCCAACAGCGCGGGTGGCAACAACCTTTCTAATGGACTACCG
GTCCTCGTGGGAGATATAAGAGGAGCGATGGTAGCGGTGTGGTTGGCGTG
GGGCGTACGAATAGACGCGGCGAGAGAAACACTCCGGCGGCAGGAGAGAC
GGCTGCAGGCAATTCACCGAGCGGAAGTTGCGAAGGTGACAAGCGATAAC
GGGCGAGTAGCGGTCTTTCTCGCGTAGGACACAAATCCATGAAGAGTTCA
CACATACTCGCAGGTAGAGACAATCACACCAACCCCCGCACCATCATCTG
TTGCTCTTCCTCTCTTCACGGCTCCAATCCACCATTTCCCGCGGACGGAG
GCTGACACCGTACGTGTGGGTCAAGAGACTACGTGGTTCCCTCGTAGCTT
GGAAGCACACATGTCGGGTTCTCTCGTGTATTCTACTGGAAGACACTGGC
CGTGCTGCAAAGCAGTCCCAACAGTCTAATCACGGTCGGCGTTGAGGTGG
AAACAATAATTTTGGTACGAAAAATCACATTAGGAAACTCTAGGAGATGC
GGGCTAGATGTCAGGTGCCAACTATTGAAGCTGGCCCGGGGTGAGTTGTG
CAAAGCGCACACTCACAATGTTACGAGGAGGCGTCGAAGGACTGTTTCGC
GTATGTAGAATCTCGCCAACGATTTCCCCGCCCGCGAACCCCGTCGAGGG
AAACGGATGCCTTGCACATCACTCTAGCATTGCCAAACAGAAAAAGAATT
TTTCGCGTTGCAGTTGAAACTGTCCGCTTCCTTACCCCTATCTTGTTTCC
CTTTCGCTGCGTGCTCGCGTAGTTGGAGCGTTCAACTCACCCGAAGGCAT
GCACCGGAGATAACGGGCCCAACAGAATCACCCCCCGGGTGCTCGATTGC
ATCGTAAGAGAGGCGGCGTTGCGGCAAATCGGAGAATCGGAGCTGGCGAA
TGGTGTAAGAAGAGAAGCTCTACAAGCCAGGTTTAACTAACATGGAAATT
TATCTGAATTTTATGTCGCGAGGGACGTTGTTTTGTGTAGCCGCAGCGCA
CATTTTGCGAGATTTGTAAAATCAGATCTTGATAATGAACTGAGCCTCCA
AAATGTTGATCGTTGACGAGTCCCTTTCACGAATCTCGCAGGAGACTTAC
GGATCTTGCTCCAATGACAGAACCTACAAATTCAGCTAGGCGATTGTTGG
CGGAACACCTCGATGACCGCTGCGACCTTCTCGAGTTAGATATTTTACAT
GTTTCTCGTTTGTAATTTCGACTACCTGAAGGCAAGTTGTGTTGTTGTTT
GTGGATTAGCGTAGCGTTTCCCCGAACACTTACCAAACCTGCAAACCTAA
AGCGCGGGGTACGTCCTCCTAACCAACCCTCCGCACGTGCTCCCCTCCCG
TTCGGTGCCCGGATGATATTTGTACCGAATGATCATTGTTCGTGGTGGTG
ACTTTTCCTGCTCCTTCCTGCCGCAGTGAACAGGACTCCGTCAGGAGGAA
ATATGCTTGGAGATACCGAAGACCGATGCTGGAATCGGGACGGCGACAGA
GGCAGGGGGCGGAACTACTCGCCCTTCGAAATGCGGCGGAATCACTTGAG
GTAGTTCTGGTTTTGGTCGAAGGGGTGTCCGCAGGGTTGACGCTGTGCTA
CACGCAGGTTCGATCGTGTTCTCTTTTGCGCGGTTATGCACATGATGCCG
GGGTCCGCAAAGTTCTCTACCTCTCCACGCCGTCGTGTCCGGGATACACT
CACGGGATGCGTCATTCGCTTCGCATTAACGTTGGTTCATCTTTCTTTCG
AAATGCCGCAGAACTGGAGTCGAGGGTGACATGAACAATTGTGAGGTAAA
CTACATGTACCCCCGTTAGGAAAGTAGTTCGGTGAAGCGTGCGTTGTGCC
GGTTTTGACCATTTTCTCAGGCACAACTAGTTAGGGCTCGCGATGAGGCT
GTGCGGCTCCTCCAGTTGCACCTCTCCCGAGCGCAGCGCATAATATCATC
TGGAGTGGCACGCACAGCGGAAATACGAAGGTAAACTTATTTCAGCTACA
GCTCACTACGTTCCTCTCGTCTGCAGGCCCGCCAATAAACAAAAGCAGCT
GACTCTGAGTTGTATTCATCCGTCCCGGTCTCAGTTGTGACACAGCTGGG
GAACCCCACAACGCGATTATCCTGTGAGTCGTGATAATTTTCCACGGTTC
TTCGACGGCGGCGATAGGGAAAGCCGATTTCATATAAACACCGTGAATGT
CTTTTCGGCGTTCGTTGCAGTGTTCACACCCGCCAACACCGGTGCTGTCT
CGGATGCTTTGGAAAATCAAGCCTCACGTCGAAGCCCAAGTTTCAGATAC
GCCTTCGAACCGGAGAATGTATACGTTGAGTTTCTCCGGTGGAGGGTAGT
CTTTTGCCGATGACTGTCGAACACATGGAGTTACTGGGGGAGGTGAACCC
CTTTTCGTTCATGCATAGCAAATATTGGGGCACGGCTGTAGTCCTATTGG
TTTCCCTGGAAACTCGACCTTTTCACCGTCGCACATGCCCGCCCCCCAAG
CTACCTGAAGGCTTCCGGTGACTATCGAGTGGCCTCCTTTCTCAGCCCGA
CGCGGAACACAAGGCTTGCTTTGAAAACAGATGTATGGTGAATCGCCGTT
TGGCTGTGCCTCGCCCGCACGAATCGGTCCGGATCCCTCACTCCAGGCCA
AAGCAGAGGAGGCGTCCAGTGGGAGCATCACCCGTGCTTCGAGAGGCAGA
CCTCGTCAAACTCGGGAATGTGCTTCTTCATGCTCAAGAGACAGCCAGTT
GTTCCATCGGAAGGGCTTTACAAACCAACGGGGATGAATCCGCTTCGGCC
TCCTCAAAAATGCTAGACGACGGAGTCCATGGAAACGCGTATAGAAGCAC
CCTTGCGGACACTGCTGCTCGTTGTCTGTGGTGCAATGCTGCCACGGCGG
ACACGGGAAAGCTGCTCCATCCGTTCGGCAACGGTGCCGGCTTTCAGGCG
ACTATGACCTACAACCGCATTCGGACATCCACGACCACGGCACGACACCA
TTGCGAGGTCCTACAACAACCTCAACGACGGCTTGCGAGAGATATTCAGT
ATCGAACGTCAAGCCGCCACCGCCCCCACCACCATAAACCAAGAGAAGAC
GACGGCATTGAGCAAGGGTCAGGAATGCACGGTTCGTGCGATCAAACACC
CCCCAATCTGGCCGCAGCATTGGAACACTCCTCTTCGCCTGACAAGCCAC
TGAGTGCAAGAGAACACGTGCTGTTGGAACAGGATGGTGGCGACGACACC
ACACCGGGTGCACCATTTTGCTCTTGGGGGTGCGCCAGGAAGTGGAACGA
CAGATTTTCGCCCTTGCAGACCCGACACGAGAGGGGTCTGCGGATCGACA
TTGCAGCAGGAAGGGTTGTCCGGAGATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig779:22409..26537+

>mRNA_E_fasciculatus_S2_contig779.15958.1 ID=mRNA_E_fasciculatus_S2_contig779.15958.1|Name=mRNA_E_fasciculatus_S2_contig779.15958.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1821bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig779:22409..26537+ (Ectocarpus fasciculatus EfasUO2)
ATGAACTACAACATCGAAGACGACAGCGGCAGTATCTATAACATCGACAA
CAGCAGCAGCAGCTGCAGCTGCGGCAGCAGAGGCAGCAACAGACCCGACA
GGTCGTTGGCGGCCTTTGAACACTGTAGCCAACCCACAGAGGCGGCGAGA
ATTTCGTTCTCCTCTTCCGCCCATCATAGCGACGATCACCAGGGTGCGGT
AGACCCGCCGCGATGTTGTTCACCCTCTCGCTGGCCGACCCCGCAGTCTG
TTCGGTCCTCCAGCGGGTACCTGTTCTATGCCCGCGAAGCCGGCGATTCT
CCCGGCGGCAGCTCCCCTGAGCGAACACCAATTGAAGGAAGGAACCAGCG
GTCGCCACGGCGGGGGCGGGGGCGGCGGTGGCGACGACGACAACCAAGCA
ACCGACAGAATAGAGGGCAGGATTGGCCAGCGCACTCTTTCCCGCAAGAA
GGAGGTGCGACACCGCCGAAGACCGCGCGTGAACGTGGTTCTCAACACTG
CTTCAGTGGCCCCAACAGAGGATGGAACGTCTCCAACAGCGCGGGTGGCA
ACAACCTTTCTAATGGACTACCGGTCCTCGTGGGAGATATAAGAGGAGCG
ATGGTAGCGGTGTGGTTGGCGTGGGGCGTACGAATAGACGCGGCGAGAGA
AACACTCCGGCGGCAGGAGAGACGGCTGCAGGCAATTCACCGAGCGGAAG
TTGCGAAGTTGGAGCGTTCAACTCACCCGAAGGCATGCACCGGAGATAAC
GGGCCCAACAGAATCACCCCCCGGGTGCTCGATTGCATCGTAAGAGAGGC
GGCGTTGCGGCAAATCGGAGAATCGGAGCTGGCGAATGGTGTAAGAAGAG
AAGCTCTACAAGCCAGTGAACAGGACTCCGTCAGGAGGAAATATGCTTGG
AGATACCGAAGACCGATGCTGGAATCGGGACGGCGACAGAGGCAGGGGGC
GGAACTACTCGCCCTTCGAAATGCGGCGGAATCACTTGAGGCACAACTAG
TTAGGGCTCGCGATGAGGCTGTGCGGCTCCTCCAGTTGCACCTCTCCCGA
GCGCAGCGCATAATATCATCTGGAGTGGCACGCACAGCGGAAATACGAAG
GAGGCGTCCAGTGGGAGCATCACCCGTGCTTCGAGAGGCAGACCTCGTCA
AACTCGGGAATGTGCTTCTTCATGCTCAAGAGACAGCCAGTTGTTCCATC
GGAAGGGCTTTACAAACCAACGGGGATGAATCCGCTTCGGCCTCCTCAAA
AATGCTAGACGACGGAGTCCATGGAAACGCGTATAGAAGCACCCTTGCGG
ACACTGCTGCTCGTTGTCTGTGGTGCAATGCTGCCACGGCGGACACGGGA
AAGCTGCTCCATCCGTTCGGCAACGGTGCCGGCTTTCAGGCGACTATGAC
CTACAACCGCATTCGGACATCCACGACCACGGCACGACACCATTGCGAGG
TCCTACAACAACCTCAACGACGGCTTGCGAGAGATATTCAGTATCGAACG
TCAAGCCGCCACCGCCCCCACCACCATAAACCAAGAGAAGACGACGGCAT
TGAGCAAGGGTCAGGAATGCACGGTTCGTGCGATCAAACACCCCCCAATC
TGGCCGCAGCATTGGAACACTCCTCTTCGCCTGACAAGCCACTGAGTGCA
AGAGAACACGTGCTGTTGGAACAGGATGGTGGCGACGACACCACACCGGG
TGCACCATTTTGCTCTTGGGGGTGCGCCAGGAAGTGGAACGACAGATTTT
CGCCCTTGCAGACCCGACACGAGAGGGGTCTGCGGATCGACATTGCAGCA
GGAAGGGTTGTCCGGAGATAG
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