mRNA_E_fasciculatus_S2_contig779.15957.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig779.15957.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J1_ECTSI) HSP 1 Score: 778 bits (2008), Expect = 9.580e-279 Identity = 444/594 (74.75%), Postives = 457/594 (76.94%), Query Frame = 1
Query: 25 APPKLKLRNNAVQAVGETYFQVALMGLATAGVLAIVAVSIGSTRGMFEFTVDRCDCLLTSEVEDAVAQGAECVFGQDYMGVDIGWKSFVVDKAYSTEGCLDGWEGTTDIGSPFGDGIYRKKSETYGNGATGAADASVGLFVVSAFIAIVMFKTVQMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKIGSMGNSLAATLFKATLDVCEDDWDTVGFPVGE----EIFCQAAPWNFEVPLYAGWIAIAHVAVMFLTSVWILSRSGLVEGILDGSKLVGGKVVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEQNIMIRPYPLPGSVKKVAKAAEALVSPLRKM-GGSPKHTRNNTLRTGESAGASPKISLGGDIEGGHAPGGHNLPSPGPVQSIPSAAAAPASKAXXXXXXXXXXXXXXXXXLPGRVGGGGGRSASASEEEVSPATRSSATGGSSWGRDGEGSGSSGDAETDSSLGSLAQSPTSVVSGVSHDKTRSEIDWGRIMDAGDNDGTAKPYDEGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKKRESATHFEV 1791
APPKL +RN AVQAVGE YFQVAL VDIGWKSFV+DKAYSTEGCLDGWEGT DIGSPFGDGIYRKKS YGNGATGAADASVGLFVVSAFIAI+MFKTV+MSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGK+G M +SLAATLF ATLDVCEDDWDTVGFPVGE EIFCQA PWNFEVPLYAGW AIAHVAVMFLTSVWIL++SGLVEGILDGSKLVGGK VTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGE NIMIRPYPLPGSVKKVAKAAEALVSPLRKM GGSPKHT++NTLRTGE AG PKI+LGGDIEG A GGHNL SPGPVQSIP A AP SKA XXXXXXXXXXXXXXXLPG+ GG RSASASEEEVSPA RSS G H KTRSEIDWGRIMDAGDNDGTAK YD+GDEDDDSPHLSS MLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPK R SATHFEV
Sbjct: 2 APPKLAMRNQAVQAVGEKYFQVAL--------------------------------------------------------VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEEIFCQAKPWNFEVPLYAGWTAIAHVAVMFLTSVWILTKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKMQGGSPKHTKDNTLRTGERAGVRPKIALGGDIEG-QATGGHNLSSPGPVQSIPRATGAPGSKAATXXXXXXXXXXXXXXXLPGKPGGXXXRSASASEEEVSPAIRSSI-------------------------------------GKGHGKTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDDSPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 501
BLAST of mRNA_E_fasciculatus_S2_contig779.15957.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G0_9PHAE) HSP 1 Score: 436 bits (1120), Expect = 4.050e-146 Identity = 272/384 (70.83%), Postives = 284/384 (73.96%), Query Frame = 1
Query: 796 MFLTSVWILSRSGLVEGILDGSKLVGGKVVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEQNIMIRPYPLPGSVKKVAKAAEALVSPLRKMGGSPKHTRNNTLRTGESAGASPKISLGGDIEGGHAPGGHNLPSPGPVQSIPSAAAAPASKAXXXXXXXXXXXXXXXXXLPGRV-------GGGGGRSASASEEEVSPATRSSATGGSS---------------------------------------------WGRDGEGSGSSGDAETDSSLGSLAQSPTSVVSGVSHDKTRSEIDWGRIMDAGDNDGTAKPYDEGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKKRESATHFEV 1791
MFLTSVWILS+SGLVEGILDGSKLV GK VT AVGRALATTEDPDYDVSDNKLYTGE NIMIRPYPLPGSVKKVAKAAE LVSPLRKMGGSPKHT+NNTLRTGESAG P I+LG DIEG APGGHNL SPGPV+SIP AA APASKA XXXXXXXXXXXXXXX GG GGRSASASEEEVSPA RSS + G + W RD +GD ETDSSLG++A+SP SVVSG H+KTRSEIDWGRIMDAG NDGTAK YD+GDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPK R SATHFEV
Sbjct: 1 MFLTSVWILSKSGLVEGILDGSKLVDGKAVT--------AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEVLVSPLRKMGGSPKHTKNNTLRTGESAGVRPNIALGADIEG-QAPGGHNLSSPGPVESIPRAAVAPASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXPGGEGGRSASASEEEVSPAIRSSGSSGRTLNRRAHAMGIKPQSSMTSHHIIRRRQITMVNRDHVSTSKYHNKGPWDRD------AGDVETDSSLGNVARSPASVVSGKGHEKTRSEIDWGRIMDAGHNDGTAKSYDDGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKARGSATHFEV 369 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig779.15957.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig779.15957.1 >prot_E_fasciculatus_S2_contig779.15957.1 ID=prot_E_fasciculatus_S2_contig779.15957.1|Name=mRNA_E_fasciculatus_S2_contig779.15957.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=598bp MKKKNTEKAPPKLKLRNNAVQAVGETYFQVALMGLATAGVLAIVAVSIGSback to top mRNA from alignment at E_fasciculatus_S2_contig779:9111..20315- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig779.15957.1 ID=mRNA_E_fasciculatus_S2_contig779.15957.1|Name=mRNA_E_fasciculatus_S2_contig779.15957.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=11205bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig779:9111..20315- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig779:9111..20315- >mRNA_E_fasciculatus_S2_contig779.15957.1 ID=mRNA_E_fasciculatus_S2_contig779.15957.1|Name=mRNA_E_fasciculatus_S2_contig779.15957.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1794bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig779:9111..20315- (Ectocarpus fasciculatus EfasUO2)back to top |