mRNA_E_fasciculatus_S2_contig7786.15952.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7786.15952.1
Unique NamemRNA_E_fasciculatus_S2_contig7786.15952.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7786.15952.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7786contigE_fasciculatus_S2_contig7786:4792..6788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1290
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_000350.1
Cds size1290
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842440.3594034-CDS-E_fasciculatus_S2_contig7786:4791..57051696842440.3594034-CDS-E_fasciculatus_S2_contig7786:4791..5705Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7786 4792..5705 -
1696842440.368758-CDS-E_fasciculatus_S2_contig7786:6166..63821696842440.368758-CDS-E_fasciculatus_S2_contig7786:6166..6382Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7786 6167..6382 -
1696842440.3769083-CDS-E_fasciculatus_S2_contig7786:6628..67881696842440.3769083-CDS-E_fasciculatus_S2_contig7786:6628..6788Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7786 6629..6788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7786.15952.1prot_E_fasciculatus_S2_contig7786.15952.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7786 4792..6788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7786.15952.1

>prot_E_fasciculatus_S2_contig7786.15952.1 ID=prot_E_fasciculatus_S2_contig7786.15952.1|Name=mRNA_E_fasciculatus_S2_contig7786.15952.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=430bp
QDGKQNEQQASWPPWLVPSCPTSTEPWKGALLNLPWPAGVQPDFRTVFSH
EWTGGRGEPGDLAWQLSNKTIGAAMTAKDNNNREHASALRALDSKLGGGG
GSGALLSKHPKEPSGLLRTILRLVAASQDLRPPGPVPPDLAPFRRAGSAD
GLPPLCTFSCRPAEGEGQDAGVGNLSGSEKNTAKNGQRNDAINGSHQAVE
RYVRDTQDDRNQTFNETVGGQTDECGEAARDRNQRYVGRAFAHPAADVTP
SATHVVNWIEDNPVVACGDVAVSAALRRNHHQREGDTASSQKRQRHPVFP
GENTSSSTRKSAVKETEADANRRDAYHKRKRKPGYDDVGGDGTGDSGGEE
AEDRMSTRSTERDAKNGGDASSEKGLEHTEAPVASTDEHGSSVGPPVAES
TPAAAVLPDIVGAGGFTEFIPLLETIIGR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7786:4792..6788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7786.15952.1 ID=mRNA_E_fasciculatus_S2_contig7786.15952.1|Name=mRNA_E_fasciculatus_S2_contig7786.15952.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1997bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7786:4792..6788- (Ectocarpus fasciculatus EfasUO2)
CAGGATGGAAAACAAAACGAACAGCAGGCGTCGTGGCCTCCTTGGCTGGT
CCCCTCTTGCCCAACATCTACCGAGCCCTGGAAAGGAGCTCTCCTCAACT
TGCCGTGGCCAGCGGGGGTCCAGCCTGATTTCCGGACCGTGTTCAGCCAC
GAGTGGACAGGTACGCCGCTTATGCTACGGATCTGATGCAACACAACCGG
TCGTGATAGTGTCGTGCGTTGCCATTAAGGGTGCTGCTTGGTAGACCGGT
CTGTTGGTAGTTTGGAGGCTTAGGCTTCTGAAATAAAATATACTGTTGAG
CTTTGAAGCGGGAGTAAATCTGATAGTTAGCGTAAGACGCGCGCGATGTT
CCAATGAATGTTCCTCGACAGGCAACGAACGCCCTACTTCGTCTGTATCG
CACCAGGTGGTAGGGGAGAACCTGGCGATTTGGCGTGGCAGCTGTCTAAC
AAAACGATAGGGGCGGCGATGACCGCGAAGGACAACAACAACAGAGAGCA
TGCTTCAGCGTTGCGGGCGTTGGATTCGAAGCTTGGTGGCGGTGGTGGAA
GCGGCGCTCTACTGTCCAAACACCCAAAAGAGCCCAGCGGACTGCTGCGT
ACCATCCTTCGCCTCGTTGCGGGTAAGAACAAGAATAGTCTAGACGCTTT
TAGACAAAAACCGGTTTCAAATCTCGACCATATTCGAAAGTGATCTACCT
ACCCAGACCGTCCTTGACGTCTAGTCTCACGTAACACGGGCTCCGGCCGA
GCGGAAGGTGTAGGTAAAGAGGAAACAAGTTGCCTATTCTCGTCTCGTCG
TGGCAACTGAACCAAGAAAGAAGGAAAATGCCAATAAATACTGGTGCTCA
CCTGGTGTGAGAGCGTACCCTCCTGTTTCTTCCGAAATGTGACGATTCGT
GGTCGTTGTGGGACTGTGTGGCACCCCGAAGAGGATGAATGGCCCCCCTG
GTTTTACGAGAAGGAGGACGCGTACACTAGGCTAGGCCATGTAGCGTGGC
AATCACTCCACTTCCCCTACTTCATCAGATGAAATATAATATAGACACTT
TTCCCCTTTGGATGACTACTTGTATATTTCCAGCGTCCCAAGACCTCCGA
CCACCGGGCCCGGTGCCCCCAGACCTGGCCCCCTTTCGACGAGCGGGGAG
CGCGGACGGGCTGCCTCCTCTATGTACCTTTTCGTGCCGCCCCGCTGAGG
GTGAGGGCCAGGACGCGGGCGTGGGCAACCTGAGTGGGTCTGAGAAAAAT
ACAGCCAAGAATGGCCAAAGAAACGACGCGATCAACGGTAGCCACCAAGC
AGTAGAGAGGTATGTTCGAGATACGCAAGACGACAGGAATCAAACTTTCA
ATGAGACTGTCGGCGGACAGACAGACGAATGCGGGGAAGCAGCACGGGAT
CGAAATCAACGGTATGTGGGGAGAGCTTTCGCTCACCCTGCAGCGGATGT
TACACCGTCAGCCACCCACGTGGTCAACTGGATCGAAGACAACCCCGTTG
TAGCGTGCGGAGACGTCGCCGTGTCCGCCGCTCTCCGCCGGAATCACCAC
CAACGTGAAGGGGACACTGCAAGTAGTCAAAAACGACAACGTCATCCAGT
TTTTCCAGGAGAAAATACCTCCTCCAGCACGAGGAAGAGTGCCGTCAAGG
AAACGGAAGCCGACGCAAACAGACGTGACGCCTACCACAAACGTAAACGG
AAGCCAGGGTACGACGATGTCGGCGGTGATGGTACCGGCGACAGTGGGGG
GGAAGAAGCCGAGGACAGGATGTCGACGCGTTCAACCGAGCGGGATGCAA
AAAACGGAGGAGACGCTTCTTCCGAGAAGGGCCTGGAGCACACGGAGGCG
CCGGTGGCATCTACCGATGAGCACGGGTCGTCGGTGGGACCGCCAGTAGC
AGAGTCAACGCCCGCTGCTGCTGTGCTCCCCGACATTGTTGGGGCCGGGG
GGTTCACCGAGTTCATCCCGCTACTTGAAACCATCATCGGGAGGTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7786:4792..6788-

>mRNA_E_fasciculatus_S2_contig7786.15952.1 ID=mRNA_E_fasciculatus_S2_contig7786.15952.1|Name=mRNA_E_fasciculatus_S2_contig7786.15952.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1290bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7786:4792..6788- (Ectocarpus fasciculatus EfasUO2)
CAGGATGGAAAACAAAACGAACAGCAGGCGTCGTGGCCTCCTTGGCTGGT
CCCCTCTTGCCCAACATCTACCGAGCCCTGGAAAGGAGCTCTCCTCAACT
TGCCGTGGCCAGCGGGGGTCCAGCCTGATTTCCGGACCGTGTTCAGCCAC
GAGTGGACAGGTGGTAGGGGAGAACCTGGCGATTTGGCGTGGCAGCTGTC
TAACAAAACGATAGGGGCGGCGATGACCGCGAAGGACAACAACAACAGAG
AGCATGCTTCAGCGTTGCGGGCGTTGGATTCGAAGCTTGGTGGCGGTGGT
GGAAGCGGCGCTCTACTGTCCAAACACCCAAAAGAGCCCAGCGGACTGCT
GCGTACCATCCTTCGCCTCGTTGCGGCGTCCCAAGACCTCCGACCACCGG
GCCCGGTGCCCCCAGACCTGGCCCCCTTTCGACGAGCGGGGAGCGCGGAC
GGGCTGCCTCCTCTATGTACCTTTTCGTGCCGCCCCGCTGAGGGTGAGGG
CCAGGACGCGGGCGTGGGCAACCTGAGTGGGTCTGAGAAAAATACAGCCA
AGAATGGCCAAAGAAACGACGCGATCAACGGTAGCCACCAAGCAGTAGAG
AGGTATGTTCGAGATACGCAAGACGACAGGAATCAAACTTTCAATGAGAC
TGTCGGCGGACAGACAGACGAATGCGGGGAAGCAGCACGGGATCGAAATC
AACGGTATGTGGGGAGAGCTTTCGCTCACCCTGCAGCGGATGTTACACCG
TCAGCCACCCACGTGGTCAACTGGATCGAAGACAACCCCGTTGTAGCGTG
CGGAGACGTCGCCGTGTCCGCCGCTCTCCGCCGGAATCACCACCAACGTG
AAGGGGACACTGCAAGTAGTCAAAAACGACAACGTCATCCAGTTTTTCCA
GGAGAAAATACCTCCTCCAGCACGAGGAAGAGTGCCGTCAAGGAAACGGA
AGCCGACGCAAACAGACGTGACGCCTACCACAAACGTAAACGGAAGCCAG
GGTACGACGATGTCGGCGGTGATGGTACCGGCGACAGTGGGGGGGAAGAA
GCCGAGGACAGGATGTCGACGCGTTCAACCGAGCGGGATGCAAAAAACGG
AGGAGACGCTTCTTCCGAGAAGGGCCTGGAGCACACGGAGGCGCCGGTGG
CATCTACCGATGAGCACGGGTCGTCGGTGGGACCGCCAGTAGCAGAGTCA
ACGCCCGCTGCTGCTGTGCTCCCCGACATTGTTGGGGCCGGGGGGTTCAC
CGAGTTCATCCCGCTACTTGAAACCATCATCGGGAGGTAA
back to top