mRNA_E_fasciculatus_S2_contig7786.15951.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7786.15951.1
Unique NamemRNA_E_fasciculatus_S2_contig7786.15951.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7786.15951.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U0_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 1.650e-105
Identity = 166/184 (90.22%), Postives = 174/184 (94.57%), Query Frame = 2 
Query:   14 IRSTASTATPPNRLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNDVGDAASSKLELVGVRQAAKQAMWACSSGLNTRRLRVAFLREVGEGGEETEATEGSCGCCLSSPGYLEETERVVGVGEDGISLPVEKGGGSSSGMDARVWAAMSSDVSGWTTKFVRGRLSRG 565
            + + ASTATPPNRLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNDVGD+ASS+LELVGVRQAAKQAMWACSSG+NTRRLRVAFLRE GE  EETE  EG+ GCCLSSPGYLEETERVVGVGEDG+SLPV  GGGSSSG+DARVWAAMSSDVSGWTTKFVRGRLSRG
Sbjct:  290 MSTAASTATPPNRLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNDVGDSASSELELVGVRQAAKQAMWACSSGINTRRLRVAFLREAGEESEETEVAEGNGGCCLSSPGYLEETERVVGVGEDGVSLPVGNGGGSSSGIDARVWAAMSSDVSGWTTKFVRGRLSRG 473
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BLAST of mRNA_E_fasciculatus_S2_contig7786.15951.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW62_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 1.950e-93
Identity = 158/182 (86.81%), Postives = 167/182 (91.76%), Query Frame = 2 
Query:   20 STASTATPPNRLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNDVGDAASSKLELVGVRQAAKQAMWACSSGLNTRRLRVAFLREVGEGGEETEATEGSCGCCLSSPGYLEETERVVGVGEDGISLPVEKGGGSSSGMDARVWAAMSSDVSGWTTKFVRGRLSRG 565
            + AST+T P  LGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSN VGDA SS+L+LVGVRQAAKQAMWACSSG+NTRRLRVAFL E GE GEETE  EG+CGCCLSSPGYLEETE +VGVGEDG+SLPV   GGSSSGMDARVWAAMSSDVSGWTTKFV+GRLSRG
Sbjct:  758 TAASTSTHPICLGPIIREADAILSGVDFHCSGVLDELLRSTAVAARVGKAISESRGPRSNGVGDAESSELDLVGVRQAAKQAMWACSSGINTRRLRVAFLWEAGEEGEETEVAEGNCGCCLSSPGYLEETEGIVGVGEDGVSLPVGIAGGSSSGMDARVWAAMSSDVSGWTTKFVQGRLSRG 939
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7786.15951.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.650e-10590.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.950e-9386.81protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7786contigE_fasciculatus_S2_contig7786:85..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score182.6
Seed ortholog evalue9.3e-44
Seed eggNOG ortholog2880.D7G4U0
Model size1160
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2DBB4@1,2S5HM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_000370.1
Cds size303
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842440.2947252-UTR-E_fasciculatus_S2_contig7786:84..3491696842440.2947252-UTR-E_fasciculatus_S2_contig7786:84..349Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7786 85..349 +
1696842440.3243744-UTR-E_fasciculatus_S2_contig7786:652..12441696842440.3243744-UTR-E_fasciculatus_S2_contig7786:652..1244Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7786 653..1244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842440.308706-CDS-E_fasciculatus_S2_contig7786:349..6521696842440.308706-CDS-E_fasciculatus_S2_contig7786:349..652Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7786 350..652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7786.15951.1prot_E_fasciculatus_S2_contig7786.15951.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7786 350..652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7786.15951.1

>prot_E_fasciculatus_S2_contig7786.15951.1 ID=prot_E_fasciculatus_S2_contig7786.15951.1|Name=mRNA_E_fasciculatus_S2_contig7786.15951.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=101bp
MWACSSGLNTRRLRVAFLREVGEGGEETEATEGSCGCCLSSPGYLEETER
VVGVGEDGISLPVEKGGGSSSGMDARVWAAMSSDVSGWTTKFVRGRLSRG
*
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mRNA from alignment at E_fasciculatus_S2_contig7786:85..1244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7786.15951.1 ID=mRNA_E_fasciculatus_S2_contig7786.15951.1|Name=mRNA_E_fasciculatus_S2_contig7786.15951.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1160bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7786:85..1244+ (Ectocarpus fasciculatus EfasUO2)
AGAAGGAGGAGAAATACGGTCGACAGCAAGTACGGCCACGCCGCCCAACC
GTCTCGGTCCCATCATCCGAGAGGCCGATGCCATTCTGAGCGGCGTGGAT
TTCCACTGCAGCGGCGTTCTCGACGAGCTCTTGCGGTCGACAGCGGTGGC
CGCAAGGGTAGGGAAAGCGATCAGCGAGTCTCGTGGACCGAGGAGCAACG
ATGTTGGCGACGCTGCAAGTTCCAAGCTCGAGCTTGTAGGCGTTAGGCAG
GCCGCGAAGCAGGCCATGTGGGCCTGCTCCAGTGGATTAAACACCCGGAG
ACTTCGGGTGGCATTTTTAAGAGAGGTAGGAGAGGGGGGCGAGGAAACGG
AGGCCACTGAGGGTAGCTGCGGGTGCTGCTTGTCAAGCCCAGGATATTTA
GAGGAAACGGAGAGAGTTGTAGGGGTGGGCGAGGATGGTATTTCTTTGCC
GGTGGAGAAGGGGGGTGGATCGTCTAGCGGCATGGACGCCAGGGTGTGGG
CCGCGATGTCGTCGGATGTGTCGGGTTGGACCACTAAGTTCGTGCGGGGA
AGACTGAGCAGGGGTTGAAAACCGTCCGCGGCAGCACCACCAGATGCACC
AGCACCACTATCGTGGCGTGTAGACTTTTTTTCTGTTCCTCTGAGGAAAC
ATGGGATTGGTTGGGGCTCTTTCTGTCGTTGATGCAAGTCAGTGCAGCGT
CGCACGAACACGGTATTTCTTGATATTTTCTACTTTGGCCCGGGCGGGCA
AGCCTTAGGTTCGCCAAAATGTGCGAGCGCAGCGGGGCATTACTCTTGAC
CTTTTCAGCTTAGTGTTTGAGAGGAGTGGCTCGGCGTCAACGATGGTCGA
CACTATTTAGCGACAGGCAGCAGCGGTCGAACTCAGCTGTTGTACATAAC
TGCAGCAGGTCTATAGCTACCGGAATGGCTCTCCAAGCGCTTCACGAAAG
GTTCAGGCAAATGTAGGAAATCACCTGCTGTTATATTATGAAACAGTTGG
ATGGATCGGTGTAGGATACTGCCTTTTGCATCGGCATCCGGCCAGCAATT
ACCTTTTTTGGGCGTACAGTTTTTGGTTTCGCGTGCACCCTATCCCATAC
CCGTTTTCCGAACCCAACGTGTTTCATGTAATCGCGGGTTAAACTGTCAC
TCGTTTCGGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7786:85..1244+

>mRNA_E_fasciculatus_S2_contig7786.15951.1 ID=mRNA_E_fasciculatus_S2_contig7786.15951.1|Name=mRNA_E_fasciculatus_S2_contig7786.15951.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7786:85..1244+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGGCCTGCTCCAGTGGATTAAACACCCGGAGACTTCGGGTGGCATT
TTTAAGAGAGGTAGGAGAGGGGGGCGAGGAAACGGAGGCCACTGAGGGTA
GCTGCGGGTGCTGCTTGTCAAGCCCAGGATATTTAGAGGAAACGGAGAGA
GTTGTAGGGGTGGGCGAGGATGGTATTTCTTTGCCGGTGGAGAAGGGGGG
TGGATCGTCTAGCGGCATGGACGCCAGGGTGTGGGCCGCGATGTCGTCGG
ATGTGTCGGGTTGGACCACTAAGTTCGTGCGGGGAAGACTGAGCAGGGGT
TGA
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