mRNA_E_fasciculatus_S2_contig7785.15950.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7785.15950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G564_ECTSI) HSP 1 Score: 528 bits (1361), Expect = 4.170e-184 Identity = 254/286 (88.81%), Postives = 270/286 (94.41%), Query Frame = 1
Query: 1 FQELHRQARDDVLGVLAAPADSCLTSNWRNTSASQGCTAADQCGKDEWSARESRTVTVVGLKAEGEGEESDCNSQNLSILVRLQGPEALAEAATPVEGSRCNEVVGQYPEGSVEMGFVGSVVFYGLAEACCTLCTRLEGCVGWSNTLKPDIASIDGKKKCVLYSSVSGPPVEDKAMKRAITSGIPRDEESMMYLAHSMSISRSWCTPDNSRVLGSGKKVTVKAAGSSVPLTDGDGALPMCRSTNVIPEPGRWVGLQDVECGDMRAEGIRGDPIWPHYRGDIFGVTK 858
QELHRQARDDVLG+LAAPADSCLTSNWR TSA+QGCTAADQCGKDEW ARESRTVT+VGLKA+GEGEESDCNSQNLSILVRLQGPEALAEAATPVEG RC+EV GQYPEGSVEMG VG VVFYGLAEACCTLCTR EGCVGWSNT+KPDIA+IDG+KKCVLYSSVSGPPVEDKAM RAITSG+PRDEESMMYLAHSMSI+RSWCTPD++RVLGSGKK+TVKAAG SV + DGDGALP+CRSTNV+PEPGRWVGL DVECGDMRAEGI GDPIWP YR DIFGVTK
Sbjct: 40 MQELHRQARDDVLGILAAPADSCLTSNWRFTSANQGCTAADQCGKDEWCARESRTVTMVGLKAQGEGEESDCNSQNLSILVRLQGPEALAEAATPVEG-RCHEVAGQYPEGSVEMGSVGGVVFYGLAEACCTLCTRWEGCVGWSNTVKPDIATIDGEKKCVLYSSVSGPPVEDKAMNRAITSGVPRDEESMMYLAHSMSIARSWCTPDSARVLGSGKKLTVKAAGPSVSIADGDGALPLCRSTNVLPEPGRWVGLHDVECGDMRAEGIHGDPIWPDYRRDIFGVTK 324
BLAST of mRNA_E_fasciculatus_S2_contig7785.15950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ9_9PHAE) HSP 1 Score: 497 bits (1280), Expect = 1.080e-170 Identity = 255/347 (73.49%), Postives = 267/347 (76.95%), Query Frame = 1
Query: 1 FQELHRQARDDVLGVLAAPADSCLTSNWRNTSASQGCTAADQCGK----------------------------DEWSARESRTVTVVGLKAEGEGEESDCNSQNLSILVRLQGPEALAEAATPVEG---------------------------------SRCNEVVGQYPEGSVEMGFVGSVVFYGLAEACCTLCTRLEGCVGWSNTLKPDIASIDGKKKCVLYSSVSGPPVEDKAMKRAITSGIPRDEESMMYLAHSMSISRSWCTPDNSRVLGSGKKVTVKAAGSSVPLTDGDGALPMCRSTNVIPEPGRWVGLQDVECGDMRAEGIRGDPIWPHYRGDIFGVTK 858
QELHRQARDDVLG+LAAPADSCLTSNWR TSA+QGCTAADQCGK DEW ARESRTVTVVGLKA+GEGEESDCNSQNLSILVRLQGPEALAEAATPV+G C+EV GQYPEGSVEMG VGSVVFYGLAEACCTLCTR EGCVGWSNT+K DIA IDGKK+CVLYSSVSGPPVEDKAM RAITSGIPRDEESMMYLAHSMSI+RSWCTPDN+RVLGSGKK+TVKAAG SV + DGD ALP CRSTNV+PEPGRWVGLQDVECGDMRAEGI GDPIWP YR DIFGVTK
Sbjct: 47 MQELHRQARDDVLGILAAPADSCLTSNWRKTSANQGCTAADQCGKGWLFHQQDLLLVTQWAGSDASSVGDDATDEWCARESRTVTVVGLKAQGEGEESDCNSQNLSILVRLQGPEALAEAATPVDGRCAWTVEFTPSLEGVYTFDATVLNWEGGLDPHPEMCHEVAGQYPEGSVEMGSVGSVVFYGLAEACCTLCTRWEGCVGWSNTVKFDIAPIDGKKRCVLYSSVSGPPVEDKAMNRAITSGIPRDEESMMYLAHSMSIARSWCTPDNARVLGSGKKLTVKAAGPSVSIADGDDALPRCRSTNVLPEPGRWVGLQDVECGDMRAEGIHGDPIWPDYRRDIFGVTK 393
BLAST of mRNA_E_fasciculatus_S2_contig7785.15950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ9_9PHAE) HSP 1 Score: 306 bits (784), Expect = 1.230e-98 Identity = 141/165 (85.45%), Postives = 156/165 (94.55%), Query Frame = 1
Query: 364 VFYGLAEACCTLCTRLEGCVGWSNTLKPDIASIDGKKKCVLYSSVSGPPVEDKAMKRAITSGIPRDEESMMYLAHSMSISRSWCTPDNSRVLGSGKKVTVKAAGSSVPLTDGDGALPMCRSTNVIPEPGRWVGLQDVECGDMRAEGIRGDPIWPHYRGDIFGVTK 858
+F+G+AEACCTLCTRLEGCVGWSNT+KPDIASIDG KKCVLYSSVSGPPVEDKAM RAITSGIPRDEESMMYLAHSMSI++SWCTPDN+RVLGSGKK+TVKAA + VP+ D +GALP+CRSTNV+PEPGRWVGLQDVECGDMRAEG+ GDP+WP YR DIFGVTK
Sbjct: 1 MFFGVAEACCTLCTRLEGCVGWSNTVKPDIASIDGTKKCVLYSSVSGPPVEDKAMNRAITSGIPRDEESMMYLAHSMSIAKSWCTPDNARVLGSGKKLTVKAA-APVPIADEEGALPLCRSTNVLPEPGRWVGLQDVECGDMRAEGVNGDPVWPEYRRDIFGVTK 164
BLAST of mRNA_E_fasciculatus_S2_contig7785.15950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ7_9PHAE) HSP 1 Score: 142 bits (357), Expect = 2.340e-35 Identity = 87/190 (45.79%), Postives = 104/190 (54.74%), Query Frame = 1
Query: 367 FYGLAEACCTLCTRLEGCVGWSNTLKPDIASIDGKKKCVLYSSVSGPPVEDKAMKRAITSGIPRDEESMMYLAHSMSISRSWCTPDNSRVLGSG-KKVTVKAAGSSV----PLTDGD------------------GALPMCRS-----TNVIPEPGRWVGLQDVECG-DMRAEGIRGDPIWPHYRGDIFG 849
FYG E CCTLCTR EGCV WS T P A ++G + CVLYSSV+ PVEDK +KRA+ SG PR EESM YL SMSI+R WCT DN +LGSG ++ TV AA + GD ALP+CR T +P GRWV L+D +C + G WP Y D+FG
Sbjct: 10 FYGNFEGCCTLCTRREGCVAWSATDDPSKALVNGSR-CVLYSSVTRQPVEDKQLKRAVRSGTPRAEESMTYLGPSMSIARRWCTEDNGNILGSGGRRFTVVAARETTIEENKREQGDRETEEEEVAVAALAGLEWDALPLCRPGGGVPTTPLPREGRWVSLRDTKCNLSPEMVDLWG---WPTYDKDMFG 195
BLAST of mRNA_E_fasciculatus_S2_contig7785.15950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ1_ECTSI) HSP 1 Score: 130 bits (328), Expect = 1.220e-30 Identity = 95/274 (34.67%), Postives = 125/274 (45.62%), Query Frame = 1
Query: 139 EWSARESRTVTVVGLKAEGEGEESDCNSQNLSILVRLQGPEALAEAATPVEG---------------------------------SRCNEVVGQYPEGSVEMGFVGSVVFYGLAEACCTLCTRLEGCVGWSNTLKPDIASIDGKKKCVLYSSVSGPPVEDKAMKRAITSGIPRDEESMMYLAHSMSISRSWCTP---DNSRVLGSGKKVTVKAAGSSVPLTDGDGALPMCRSTNVIPEPGRWVGLQDVECG-DMRAEGIRGDPIWPHYRGDIFG 849
EWSA +TVVGL+ +GE SDCNS++LS+L+RLQGPEALAEAA PV G S C EV GQY EGSVEM V FYG E CCTLCTR EGCV WS T P A ++G ++ L + + + ++ + P +++ + S TP ++ LG + + G VP T +P GRWV L+D +C + G WP Y D+FG
Sbjct: 216 EWSAGTPGMMTVVGLREGADGELSDCNSRDLSMLLRLQGPEALAEAAMPVAGRCAWTVLFQPTLEGVYTLDVTLLDWRGGLEAHQSLCTEVAGQYGEGSVEMDAVRDGPFYGNFEGCCTLCTRREGCVAWSATNDPSKALVNGSRRGTLGGD------DGRCVLYSLVTRQPVEDKQLKGAVRSG-------TPRAEESMTYLGPSMSIA-RRPGGGVPTTP-------------LPREGRWVSLRDTKCNLSPEMVDLWG---WPTYDKDMFG 459 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7785.15950.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7785.15950.1 >prot_E_fasciculatus_S2_contig7785.15950.1 ID=prot_E_fasciculatus_S2_contig7785.15950.1|Name=mRNA_E_fasciculatus_S2_contig7785.15950.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=286bp FQELHRQARDDVLGVLAAPADSCLTSNWRNTSASQGCTAADQCGKDEWSAback to top mRNA from alignment at E_fasciculatus_S2_contig7785:260..4621- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7785.15950.1 ID=mRNA_E_fasciculatus_S2_contig7785.15950.1|Name=mRNA_E_fasciculatus_S2_contig7785.15950.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4362bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7785:260..4621- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7785:260..4621- >mRNA_E_fasciculatus_S2_contig7785.15950.1 ID=mRNA_E_fasciculatus_S2_contig7785.15950.1|Name=mRNA_E_fasciculatus_S2_contig7785.15950.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=858bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7785:260..4621- (Ectocarpus fasciculatus EfasUO2)back to top |