mRNA_E_fasciculatus_S2_contig7783.15947.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7783.15947.1
Unique NamemRNA_E_fasciculatus_S2_contig7783.15947.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: Soluble (NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV7_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.310e-55
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:   58 MSRLEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSGL 351
            MSRLEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSGL
Sbjct:   56 MSRLEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSGL 153
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BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB3_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.900e-53
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:   58 MSRLEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSGL 351
            MSRLEQQRETMKEHDRMLADLGRGVGRLKTQS MINEETSLHVRLLDDMEGDAERASSGL TEARHAEKIREKSKTFNLYVIILVLSIILAILVFSGL
Sbjct:  103 MSRLEQQRETMKEHDRMLADLGRGVGRLKTQSAMINEETSLHVRLLDDMEGDAERASSGLRTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSGL 200
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BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: Soluble (NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 5.420e-24
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:   64 RLEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEK-------------------------------IREKSKTFNLYVIILVLSIILAILVFSGL 351
            RL +QRE M+EHDR++ +LG+GVGRL   SV+IN+E +LHVRLLDDM+ D ERA++ L+ E RHA+K                               +R+KSKTF LYV I+VL+I+L +L+ SGL
Sbjct:   87 RLAKQREAMQEHDRIVEELGKGVGRLHQTSVVINDEANLHVRLLDDMDEDIERANASLMQETRHAQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRQKSKTFWLYVTIIVLTIVLVLLIVSGL 213
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BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: t-SNARE (coiled-coil homology domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1R7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.180e-20
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:   70 EQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSG 348
            +Q+RE + E D +L DLG+GV RLK Q ++I +ET +H +LL+D++GD E A+S L  EARHA++IRE+S    LY+ I +L IIL +L+  G
Sbjct:  125 QQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIG 217
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BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: Hypothetical (protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYZ3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.050e-17
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:   70 EQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFSG 348
            ++Q++ M   D M+AD+G+GV RL   +  I +ET LHVRLLD+M+ D +RA++GL  EARHAE+IR KS+   LY+ I +LS +L +L+  G
Sbjct:  161 QRQKDIMALQDDMIADIGKGVDRLGNTANKIKDETQLHVRLLDEMDVDVDRATAGLRAEARHAEQIRLKSQNCYLYICIAILSCVLLLLIVLG 253
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BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: t-SNARE (coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAN7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.560e-14
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   67 LEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIIL 327
            L  Q + M++ D  L  +G+GV  LK  S+ +  ET LH RLLDD+  D +RA+SGL +E   AE + +KS  F LY+ ILVLS+IL
Sbjct:  115 LRVQNQIMQDQDEQLNIIGQGVSNLKQYSLAVKNETDLHARLLDDINIDVDRATSGLESEGDRAEYVAKKSSNFRLYMAILVLSVIL 201
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BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: Aste57867_8788 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLB7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.660e-12
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   67 LEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIIL 327
            L  Q + M + D  L  +G+GV  LK  S+ + +ET LHVRLLDD+  D E+A++GL +E   A  + ++S  F LY+ I+VLS+IL
Sbjct:  115 LRVQNQMMLDQDEQLNMIGQGVANLKQYSLAVKDETDLHVRLLDDINVDVEKATTGLESEGDRAAILAKRSSNFRLYLAIVVLSVIL 201
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: t-SNARE (coiled-coil homology domain-containing protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G688_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.120e-12
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:   76 QRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILV 312
            Q++ M++ D  L  +G+GV  LK  S+ + +ET LH+RLLDDM+GD   A  GL TE   A KI  +S    LYV I+V
Sbjct:  113 QKQIMRDQDDQLDIIGKGVANLKNFSMAVKDETDLHIRLLDDMDGDVLHAKDGLNTEGARAAKIARQSGNIKLYVTIVV 191
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BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: t-SNARE (coiled-coil homology domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTN5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.410e-11
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   67 LEQQRETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFS 345
            L  Q + M + D  L+ +G+GV  LK  S+ +  ET LHVRLLDD+  D +RA++GL  E   A+ + +KS  F LY+ I+VL+   AILVF 
Sbjct:  139 LRVQNQIMLDQDDQLSLIGQGVSNLKQYSLSVKNETDLHVRLLDDINVDVDRATTGLEAEGDRAQILAKKSSNFRLYLAIVVLT---AILVFE 228
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Match: t-SNARE (coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D6Q0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.130e-11
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:   82 ETMKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIILVLSIILAILVFS 345
            E + + D  L+ +G+GV  LK  S+ +  ET LHVRLLDD+  D +RA++GL  E   A+ + +KS  F LY+ I+VL+   AILVF 
Sbjct:   96 EILLDQDDQLSLIGQGVSNLKQYSLSVKNETDLHVRLLDDINVDVDRATTGLEAEGDRAQILAKKSSNFRLYLAIVVLT---AILVFE 180
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7783.15947.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Soluble1.310e-55100.00NSF Attachment Protein (SNAP) Receptor (SNARE) n=1... [more]
Uncharacterized1.900e-5397.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Soluble5.420e-2446.46NSF attachment protein receptor n=1 Tax=Tribonema ... [more]
t-SNARE9.180e-2049.46coiled-coil homology domain-containing protein n=3... [more]
Hypothetical1.050e-1748.39protein n=3 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
t-SNARE4.560e-1447.13coiled-coil homology domain-containing protein n=1... [more]
Aste57867_87883.660e-1243.68protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
t-SNARE9.120e-1245.57coiled-coil homology domain-containing protein n=3... [more]
t-SNARE1.410e-1144.09coiled-coil homology domain-containing protein n=6... [more]
t-SNARE5.130e-1144.32coiled-coil homology domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7783contigE_fasciculatus_S2_contig7783:54..2011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score86.3
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog115417.EPrPW00000014724
Model size354
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Source PGD
EggNOG OGs1MCMR@121069,2AYM4@1,2S03I@2759
Cds size354
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842439.8349428-CDS-E_fasciculatus_S2_contig7783:53..1471696842439.8349428-CDS-E_fasciculatus_S2_contig7783:53..147Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7783 54..147 +
1696842439.857115-CDS-E_fasciculatus_S2_contig7783:513..6831696842439.857115-CDS-E_fasciculatus_S2_contig7783:513..683Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7783 514..683 +
1696842439.8739676-CDS-E_fasciculatus_S2_contig7783:1921..20111696842439.8739676-CDS-E_fasciculatus_S2_contig7783:1921..2011Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7783 1922..2011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7783.15947.1prot_E_fasciculatus_S2_contig7783.15947.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7783 54..2011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7783.15947.1

>prot_E_fasciculatus_S2_contig7783.15947.1 ID=prot_E_fasciculatus_S2_contig7783.15947.1|Name=mRNA_E_fasciculatus_S2_contig7783.15947.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
GGGGGGGAAAAGAGGGGGGMSRLEQQRETMKEHDRMLADLGRGVGRLKTQ
SVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYV
IILVLSIILAILVFSGL*
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mRNA from alignment at E_fasciculatus_S2_contig7783:54..2011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7783.15947.1 ID=mRNA_E_fasciculatus_S2_contig7783.15947.1|Name=mRNA_E_fasciculatus_S2_contig7783.15947.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1958bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7783:54..2011+ (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGGGGGGGGGGGCGCTGCGGCCGCGGGGGCGGGAGGGGGCGG
CGGGGGCATGTCCCGCCTCGAGCAACAGAGAGAGACCATGAAAGGTGAGC
AACAGAGAAAGCAGTCCAAGGCTCGGATGCGCCAGTATCACCGATACCAT
CAACAACCATCAATAGGAAAGCGGCTCGCAAGTGACGGGTTGTGGTGCTG
CTCGTTGCTGCGTGGGTGTTTGTGATATTGTAGCTAAACGTTTTGTTGCT
GCCGTTCGCTCGCTACAGCCAACCCTGGGTTCGTTCACATCTGACGACCA
CCGATTCCACAACACAGTTTAGACAGGTCCGAATAAATATGCGGTGGTGC
TCTCCCCCCCCCTCCGCTCTCTTCCTCCTATCGTTTGGATTTTGGTTTGA
TCATGCCGCCGCTGCGCCCGCCCTCCGACACACGTACCCCCCCAAAACCG
CTCCTCACAGAACACGATCGTATGCTGGCCGACCTGGGTAGAGGGGTAGG
ACGGCTCAAGACGCAATCGGTGATGATCAACGAGGAAACATCTCTCCATG
TCAGGCTGCTGGATGATATGGAGGGAGACGCGGAGCGGGCATCGTCGGGG
TTGCTCACCGAAGCAAGACACGCTGAAAAGGTACAGCACCGTAGTTCCCG
TTTAAGAGGTACGAGTAGTGCACACCTGAAAAGGTACAGTTAGTACTATG
CGCTGAAAAGGTACAGCAGTACTTGATGCTGACAAGGCACCGTACTGCAT
GTAAGAGGCATAGCCACCCCCCACTTTTTAGGGCGCGCATGGTTTTTCCT
CCAAACAAAAGGGAGTCTTTCAACCCGCCAAGTCTTCTTAATCTCTGGAT
TATGTTTTTTTTTTTCTCCTATCGCTTTTCCGTTGTGGGAGGCACCATGC
TTGTGAAAGCGAATGGTGTCCTTCAGTCCCAGCGGAGGCGACTGTACGCG
CTCGATACAGTTGTGCACAGCTCGAATGTGGCACGTCAAGCAGTACATCA
TCGTTTTGCAAGAACCATAACACGACGGCATTGCCAAGTGTACCCCTTAG
AATCGTAGCTTCATTTGGCACACACGTGGGGATGAAGAACTAAAGTACGA
AGAGGCGCACTCAGCGCCCCTTTCCCCGATCTTGCCATGTGCGTGACGTC
GATGAGTCATGACAGAGATACGAAGTAGGGGCAGTGGGCGCGGGTGTGCG
TAGACGCTTAATGTATCGAGGCAGGGTGCGGTTGTGTGCTTTGTCGCTCG
CGACACACGGCAAGAATTTGGTGAATACACGCCGTGATGGGAGGGTTTTT
TAAGGAAGCTGCAACCAAGTTCACACCTTTTGTTGAACTTTGAACTTTTG
AATCACCCGTGACTAAGGTGAAGGTGTCGTGGCAAAGCACGACATATGGT
GTATGACACCCTCGGGAGGCAGGCGTGGCTGATATTAGGTGTCTGGACCA
CGATCGAGGTTGACTATTTACAGCCGTTGCTGTATGGTTTTCCCGTAGTA
CTACCCAAGTGATGAAAGGGTTGTCCTTCCACGCGTGGCGTGTGCGGGAG
CACTTTGGGCTCTATTGGTTGCCGATGGGAGGGAGAGGGCGTCCACTAGC
ATTGAAACCCGGCTGGAACACGCGGGAAAGGTGGTTGGGTGTTCGTATTT
GCGCGCCCATGTTTGGCTTGTTGTCGCTTTGCTCGCCAGGCTGTTGCGGC
TGTTGTTTTAATATCCCTGTTTTGCCTTTGCGTTTAGAATTTTTTCATGT
TCGTCAACGATACCTAAACAGCGACTTGCGCTCAAACAATAAAGAGCATC
TTGTGCCAAGAAATTTACGCGTTCTCTCGCGCCCCCCACCGTCGTATTTT
CTCGCTTGCTTCCGTCAGATTCGTGAAAAGAGCAAGACCTTCAACCTGTA
CGTCATCATCCTGGTGCTGTCTATCATCCTCGCCATCCTCGTGTTTTCGG
GCCTCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7783:54..2011+

>mRNA_E_fasciculatus_S2_contig7783.15947.1 ID=mRNA_E_fasciculatus_S2_contig7783.15947.1|Name=mRNA_E_fasciculatus_S2_contig7783.15947.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7783:54..2011+ (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGGGGGGGGGGGCGCTGCGGCCGCGGGGGCGGGAGGGGGCGG
CGGGGGCATGTCCCGCCTCGAGCAACAGAGAGAGACCATGAAAGAACACG
ATCGTATGCTGGCCGACCTGGGTAGAGGGGTAGGACGGCTCAAGACGCAA
TCGGTGATGATCAACGAGGAAACATCTCTCCATGTCAGGCTGCTGGATGA
TATGGAGGGAGACGCGGAGCGGGCATCGTCGGGGTTGCTCACCGAAGCAA
GACACGCTGAAAAGATTCGTGAAAAGAGCAAGACCTTCAACCTGTACGTC
ATCATCCTGGTGCTGTCTATCATCCTCGCCATCCTCGTGTTTTCGGGCCT
CTGA
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