mRNA_E_fasciculatus_S2_contig7768.15930.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7768.15930.1
Unique NamemRNA_E_fasciculatus_S2_contig7768.15930.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB2_9PHAE)

HSP 1 Score: 491 bits (1263), Expect = 5.000e-166
Identity = 344/434 (79.26%), Postives = 352/434 (81.11%), Query Frame = 1 
Query:    1 MSTAAVASAASGIARRSRIRGLDGLTRRRSFHGTPAVSPSGAAAAARSASGAALAPNPPLLRCRSLTSAPSGSXXXXXXXXXXXSAARVTSAARRGGDWSEDKFGGGADGINLGGQFLAGAVAVAGALVATSSGGGGADWGNDRVGXDTTNWGNDRAGGGGGGRGGVW-CDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCGSDVIQVGARALSCLEPSAAARGGSAAVAPPAPPSITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQISCARDYTAAY 1299
            MSTAAVASAASGIARRSRIRGLDGL RRRSFHGTP VSP    A A SA+ AALAPN PL RCRSLTSAPS +XXXXXXXXXXX         RRGGDWS+D F   ADGIN GGQFLAGAVAVAGALVATSSGGG  D  NDRVG D T+WGNDRAG           CDASXXXX                    XXXXXXXXXXXXXXXXXXXXXX       GS+V+QVGARALSCLEPSA A    +    PAP SITDVY FEGA+EPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQIS ARDYTAAY
Sbjct:    1 MSTAAVASAASGIARRSRIRGLDGLARRRSFHGTPPVSPPETPAPAGSAA-AALAPNRPLARCRSLTSAPS-TXXXXXXXXXXXXXXXXXXXXRRGGDWSDDSFVW-ADGINFGGQFLAGAVAVAGALVATSSGGG-RDLDNDRVGGDITSWGNDRAGXXXXXXXXXXRCDASXXXXSRHQHVASAESSSFREACSTXXXXXXXXXXXXXXXXXXXXXX-------GSEVMQVGARALSCLEPSAVAPAARS----PAP-SITDVYFFEGAAEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQISSARDYTAAY 418
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: Protein (kinase domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW8_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 1.220e-105
Identity = 259/433 (59.82%), Postives = 264/433 (60.97%), Query Frame = 1 
Query:    1 MSTAAVASAASGIARRSRIRGLDGLTRRRSFHGTPAVSPSGAAAAARSASGAALAPNPPLLRCRSLTSAPSGSXXXXXXXXXXXSAARVTSAARRGGDWSEDKFGGGADGINLGGQFLAGAVAVAGALVATSSGGGGADWGNDRVGXDTTNWGNDRAGGGGGGRGGVWCDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCGSDVIQVGARALSCLEPSAAARGGSAAVAPPAPPSITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQISCARDYTAAY 1299
            MSTAAVASAASGIARRSRIRGLDGL RRRSFHGTP VSP GA A A SA+ AALAPN  L RCRSLTSAPS                                                                                                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       ++G R                                +GA+EPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQIS ARDYTAAY
Sbjct:    1 MSTAAVASAASGIARRSRIRGLDGLARRRSFHGTPPVSPPGAPAPAGSAA-AALAPNRTLGRCRSLTSAPS---------------------------------------------------------------------------------------------------------------------TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRRLGQR--------------------------------QGAAEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQISSARDYTAAY 283
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: Kinase-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F3_9STRA)

HSP 1 Score: 170 bits (431), Expect = 4.910e-45
Identity = 91/176 (51.70%), Postives = 124/176 (70.45%), Query Frame = 1 
Query:  778 SITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQ--EAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQISCARDYTAAY 1299
            +ITD Y F+ A   V+G G RS V TARH  TGQ VAVK+++R  +++ +  EEV+M++ A  H N + +    ED+  +++YIVME+ +GGELF RL   GR++EG+AARIMAE+  AV  LH  G+VHFD+KPENI+L   GD  +PEV LADFGSAF +   ++ +RDYTAAY
Sbjct:  112 TITDAYKFDDADRVVVGTGNRSQVFTARHISTGQLVAVKQMSRRRSSQGQWEEEVRMMRAAQGHRNCIRLLDSMEDEAGDSFYIVMELAQGGELFRRLQSHGRFTEGEAARIMAEILQAVEHLHSQGVVHFDIKPENIILR-HGDSMIPEVMLADFGSAFSK-NHVTGSRDYTAAY 285
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: Calcium (calmodulin-dependent protein kinase i n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAW9_9STRA)

HSP 1 Score: 152 bits (383), Expect = 9.160e-38
Identity = 77/159 (48.43%), Postives = 106/159 (66.67%), Query Frame = 1 
Query:  778 SITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFR 1254
            ++ +++ F    E  IG G   VV    HR TG+ VA+K+L +     L+VM EV +L++AG+H N++  +  F+D+E +YIVMEM EGGELF RL ++G YSE QA+ IM E+  AV +LH+ GIVH DLKPEN++LA    D    +RL DFGSAFR
Sbjct:  175 ALRNIHEFYKIVEKPIGAGGFGVVCVGSHRETGEVVAIKQLPKKAIRELKVMTEVDILRLAGEHRNIIGFRDLFQDEENWYIVMEMAEGGELFDRLVERGAYSEAQASEIMREIVDAVSYLHQQGIVHCDLKPENLLLATKASD-TSNMRLVDFGSAFR 332
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX25_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.430e-36
Identity = 77/159 (48.43%), Postives = 106/159 (66.67%), Query Frame = 1 
Query:  778 SITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFR 1254
            ++ +++ F    E  IG G   VV    HR TG+ VA+K+L +     L+VM EV +L++AG+H N++  +  F+D+E +YIVMEM EGGELF RL ++G YSE QA+ IM E+  AV +LH+ GIVH DLKPEN++LA    D    +RL DFGSAFR
Sbjct:  132 ALRNIHEFYKIVEKPIGAGGFGVVCVGSHRETGEVVAIKQLPKKAIRELKVMTEVDILRLAGEHRNIIGFRDLFQDEENWYIVMEMAEGGELFDRLVERGAYSEAQASEIMREIVDAVSYLHQQGIVHCDLKPENLLLATKASD-TSNMRLVDFGSAFR 289
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: Calcium/calmodulindependent (protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WNP0_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.600e-30
Identity = 69/156 (44.23%), Postives = 99/156 (63.46%), Query Frame = 1 
Query:  781 ITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSA 1248
            + D Y  E  +   IGRG  ++V+  + R TG+PVA+K++ R  +    V  E+ +L+   +HPN+V +   FE     Y+V+E+C GGELF RLADKG YSE   AR   ++A+AV +LH NGI+H DLKPENI+L+   DD    +++ADFG A
Sbjct:   24 LEDFYIIENRT---IGRGHYAIVNAGKCRQTGRPVAIKKIRRFLSDEKRVRSEILVLQTLKRHPNIVQLFDVFETPREAYLVLELCSGGELFERLADKGPYSEADCARHTRDMATAVHYLHENGILHRDLKPENILLS-STDDRDAVIKVADFGLA 175
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y408_HETAK)

HSP 1 Score: 127 bits (318), Expect = 2.280e-30
Identity = 74/162 (45.68%), Postives = 99/162 (61.11%), Query Frame = 1 
Query:  769 APPSITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFR 1254
            AP  I +VY      E  IG+G    V T  HR T + VAVK++ +   + L+V+EEV +L+ AG+  +V   + FF   + YYIVMEM  GGELF  L  KG Y+E +AA  + ++A  +  LHR GIVH D+KPEN+MLA    +C   + LADFGSAFR
Sbjct:   75 APRRIQEVYDI---IEKPIGQGAFGHVCTGVHRETQEVVAVKKIPKKHASLLKVLEEVDILREAGEMKSVPVFRDFFIGSDHYYIVMEMAAGGELFDHLVTKGLYTEAEAAAFLRDLAEVLCCLHRQGIVHADIKPENLMLA--DTECKKSLLLADFGSAFR 231
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: CAMK/CAMK1 (protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CUL4_SAPPC)

HSP 1 Score: 129 bits (325), Expect = 7.110e-30
Identity = 71/159 (44.65%), Postives = 96/159 (60.38%), Query Frame = 1 
Query:  772 PPSITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSA 1248
            P  + D Y  E      +GRG  + V   R R T QPVA+K++ RA T  + +  EV  L+   +HPN+VT+   FE     Y++ME+C GGELF RLA+KG YSE    R +  +A AV F+H N IVH DLKPENI+L+   DD +  +++ADFG A
Sbjct:   94 PRRVEDYYVLENTR---LGRGHYATVYRGRSRRTNQPVAIKKIRRALTDEMRLKSEVAALRKIQEHPNIVTLLDVFETAGDVYVIMELCTGGELFERLAEKGPYSEMDCVRHVRCMAEAVAFMHANDIVHRDLKPENILLSTP-DDTLACIKIADFGLA 248
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZT2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 7.350e-30
Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = 1 
Query:  796 SFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLA------VGGDDCVPEVRLADFGSA 1248
            S+  +++  +G G  SVV    HR T +PVA+K + +       V  E  +L+ AG+H +++ ++ FFED + YYIV E+ EGGELF RLA +G Y+E  A+RI   VA AV +LHR G+VHFD+KPEN++LA         +  V ++RL DFGSA
Sbjct:   45 SYAMSADNSLGVGGNSVVRAGYHRRTEEPVAIKCIPKTCADEAMVTLEANILRTAGEHQSIIALKDFFEDDDHYYIVTELAEGGELFERLAHEGGYTERAASRIFRRVAEAVAYLHREGVVHFDIKPENVLLAKKNAYGASNERNVEDIRLIDFGSA 201
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GV13_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.170e-29
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1 
Query:  781 ITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRLARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSA 1248
            + D Y  E  +   IGRG  ++V+  + R TG+ VA+K++ R  +    V  E+ +L+   KHPN+V +    E     Y+V+EMC GGELF RLADKG YSE   AR   ++A AV +LH NGI+H DLKPENI+L+   DD    +++ADFG A
Sbjct:   24 LEDFYIIENRT---IGRGHYAIVNAGKCRQTGRSVAIKKIRRFLSDEKRVRSEITVLQSIEKHPNIVELIDVLETPREVYLVLEMCSGGELFERLADKGPYSEADCARHTRDMAKAVQYLHENGILHRDLKPENILLS-STDDRTASLKVADFGLA 175
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7768.15930.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein5.000e-16679.26kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Protein1.220e-10559.82kinase domain containing protein n=1 Tax=Ectocarpu... [more]
Kinase-like4.910e-4551.70domain-containing protein n=1 Tax=Tribonema minus ... [more]
Calcium9.160e-3848.43calmodulin-dependent protein kinase i n=2 Tax=Nann... [more]
cGMP-dependent3.430e-3648.43protein kinase n=1 Tax=Nannochloropsis salina CCMP... [more]
Calcium/calmodulindependent1.600e-3044.23protein kinase putative n=1 Tax=Albugo laibachii N... [more]
Hypothetical2.280e-3045.68protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
CAMK/CAMK17.110e-3044.65protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepI... [more]
cGMP-dependent7.350e-3043.95protein kinase n=1 Tax=Phaeomonas parva TaxID=1244... [more]
Protein1.170e-2944.23kinase domain-containing protein n=1 Tax=Albugo ca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7768contigE_fasciculatus_S2_contig7768:1224..6894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score131.0
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog653948.CCA22931
Model size1299
KEGG koko:K05869,ko:K08794
KEGG Pathwayko04020,ko04024,ko04211,ko04371,ko04380,ko04720,ko04722,ko04725,ko04921,ko04925,ko05031,ko05034,map04020,map04024,map04211,map04371,map04380,map04720,map04722,map04725,map04921,map04925,map05031,map05034
Hectar predicted targeting categorymitochondrion
Exons5
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-01_002420.1
EC2.7.11.17
Cds size1299
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842438.2388065-CDS-E_fasciculatus_S2_contig7768:1223..21501696842438.2388065-CDS-E_fasciculatus_S2_contig7768:1223..2150Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7768 1224..2150 +
1696842438.2500515-CDS-E_fasciculatus_S2_contig7768:4435..45821696842438.2500515-CDS-E_fasciculatus_S2_contig7768:4435..4582Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7768 4436..4582 +
1696842438.2587786-CDS-E_fasciculatus_S2_contig7768:6036..61321696842438.2587786-CDS-E_fasciculatus_S2_contig7768:6036..6132Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7768 6037..6132 +
1696842438.266946-CDS-E_fasciculatus_S2_contig7768:6462..64841696842438.266946-CDS-E_fasciculatus_S2_contig7768:6462..6484Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7768 6463..6484 +
1696842438.2753816-CDS-E_fasciculatus_S2_contig7768:6787..68941696842438.2753816-CDS-E_fasciculatus_S2_contig7768:6787..6894Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7768 6788..6894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7768.15930.1prot_E_fasciculatus_S2_contig7768.15930.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7768 1224..6894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7768.15930.1

>prot_E_fasciculatus_S2_contig7768.15930.1 ID=prot_E_fasciculatus_S2_contig7768.15930.1|Name=mRNA_E_fasciculatus_S2_contig7768.15930.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=433bp
MSTAAVASAASGIARRSRIRGLDGLTRRRSFHGTPAVSPSGAAAAARSAS
GAALAPNPPLLRCRSLTSAPSGSGGGGGGRRSYTSAARVTSAARRGGDWS
EDKFGGGADGINLGGQFLAGAVAVAGALVATSSGGGGADWGNDRVGGDTT
NWGNDRAGGGGGGRGGVWCDASAAASRKQHHHLSSAGSCSLREACCPADS
QNNNKRGAMLSRSSSSSSSSGSSSCGSDVIQVGARALSCLEPSAAARGGS
AAVAPPAPPSITDVYSFEGASEPVIGRGQRSVVSTARHRLTGQPVAVKRL
ARAETTRLEVMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGE
LFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVG
GDDCVPEVRLADFGSAFRQYRQISCARDYTAAY
back to top

mRNA from alignment at E_fasciculatus_S2_contig7768:1224..6894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7768.15930.1 ID=mRNA_E_fasciculatus_S2_contig7768.15930.1|Name=mRNA_E_fasciculatus_S2_contig7768.15930.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5671bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7768:1224..6894+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTACAGCAGCTGTGGCGTCGGCAGCCAGCGGCATCGCCCGACGCTC
TCGCATCCGCGGCCTCGACGGCCTCACGCGGAGGAGAAGCTTCCATGGCA
CGCCTGCGGTATCGCCTTCCGGGGCAGCAGCAGCAGCACGCTCGGCATCA
GGAGCAGCGCTCGCCCCGAACCCACCGCTCCTCAGGTGCAGGTCTCTGAC
CTCGGCCCCTTCCGGCAGCGGCGGTGGCGGCGGCGGGAGGAGGAGCTACA
CCAGCGCCGCGCGCGTGACCTCCGCTGCGCGGCGCGGCGGTGATTGGTCC
GAAGACAAGTTTGGAGGAGGAGCAGATGGCATCAACCTCGGCGGGCAATT
TCTGGCGGGAGCGGTGGCTGTGGCAGGAGCTCTGGTAGCGACATCGTCGG
GGGGAGGAGGAGCAGACTGGGGTAACGACAGGGTCGGAGGAGACACCACG
AACTGGGGCAACGACAGGGCAGGCGGCGGCGGCGGCGGCAGGGGCGGGGT
GTGGTGTGATGCATCAGCAGCAGCGTCCAGGAAGCAGCATCATCATCTAT
CGTCCGCGGGGTCTTGCTCCCTCCGAGAGGCCTGCTGCCCGGCTGACAGT
CAGAACAACAACAAGCGTGGCGCTATGCTCAGCAGGAGCAGTAGTAGCAG
CAGCAGCAGCGGCAGCAGCAGCTGCGGGAGCGACGTGATACAGGTCGGTG
CGAGGGCCTTGTCGTGCCTGGAGCCGAGCGCAGCGGCGCGCGGCGGCAGC
GCGGCGGTGGCGCCGCCGGCACCCCCGAGCATCACCGACGTGTACTCCTT
CGAAGGCGCCTCGGAGCCGGTCATTGGCCGAGGGCAGCGCAGCGTCGTGA
GCACGGCAAGGCACCGCCTGACGGGGCAACCGGTGGCTGTGAAGAGGCTC
GCACGCGCGGAGACCACTCGCTTAGAGGTGAGTTCTTTCAGGGAGGAAAA
AAGAGAGCGGGCGTGCTGGTGCGTACGCGAGTTTTGTCGCGCCGCCCGCC
GCGGGTTTTTATTTCCGTGTTTTTGTGTACATTAGTAGTGCTGCTGCCGG
TGCGAACTGGTGCTGTGGCTTTGGTACAATGGTTGTTGCACCTGCTGGTT
GCTGGTTGCACTGCAGCTTGTTGCGTCAGAGGCGAGGCCCTTTCGGTGTT
GAGGTTCACCTCAAGCTTCAGAATAATAGTAGTAATAGCATCCTCCGTCC
CCTCTCCTGCGCGAGGAAAGGAGGGGGGGGGGGGTGTCCACGAGCACAGG
CAGCAGTAGCAGCAGCAGCAGAGGCAGGGTTAGGACAACGGCAACAGCAG
TTCCCTGCTCGGCTGGAGTGTATGCTCTTGGCACTATTTTTATCAATACA
GTGTAGCCTTCTCGTAAGTATCTATGGGTGGAGAGGAGTCCGTCGTTCGG
GCCTCTCTGACTGCTGTGAACTGCAGCAGCAGTATCAATCATCAATCGAC
GTCCTATTCTGCTGTTGGTGACGACTGTAAACTGAAAACTACTGCTGTAC
TGTACCACGAGCACAGCTTACAGCTTACCAGTCAGAATACCAGTTGACGA
GCAGCAACGCATGACGTCCACGCAAGGATTGCTTCCGTCCCAGATTGGTG
CGGTAAGCTTTCTTAGCAAAACGTTGCAACTTAAACAGCACTCCGGACAG
GTTTCAGTCAGCGAGAGAACTCGAGTACAGCAGTAGACGCATGACGGATG
CTAAGAATTTTGAGCAGGGAGGCTGCGCGGGAAGGGATGGTAACGTTTAG
ATTACGTTGGGTTTGCTTGACTTAGCTTGACCCCGGCTTTCGTTACAAAT
GATGGCCTCTTCCGTATATTGTACGCTCCTGCTGTCTCTAGACTTTTACT
TATCCGGAGGCGAATAAAAACTGGCTTCTGACTAAGACACTGATACTTAT
AATTGTATGGTTTTGTTTATTGTTGTACGAAGTATCATATTACGATGTGG
TACATGTAGCTGTCTGCATCGTCTCTTGGCGTCTATCCGGCGGCGCATCT
TATTTAGTTGTCGCGACCGGCCGCAGTGTCTTTCCTTTCCGCTCCCCCTC
CATCAAATTCGCTTATTTTCTCCCCCTCGGGAAAACAACCGCGCCCTATC
CTGACTATGAATTATAGCAGGAGCACTCGTTCGCCGCCGGATAAGTAATA
AAATACGATTCGAACGACTCTTTGTTGTAACGACTCTTGAGTTTATGGAG
TATCTTTTCGTCTCTACTTGTAGCATCTATCTTCAACGTACCCATCTCTG
GCCACGGTATACGGTACCTCGAACGAACCCATCTCTATCCATGGGTGGGA
GGGGAGGCGGGGATTTTTTCGTTCTTGGGTCTCGCTTTTTTCGTCGCACA
CTCCGCCTTTATAATTCCCACCGTGTAGTGCATAGATACTGTACTCTCCG
ATACTCGAGACGTCCGATGCGTGGATGTGATCACCGGAAGCGTGCTTAAA
ACGTGTGGCATACCATTCATTTATCGGCAGGACTGCTGCGCGCCTCCCTC
TCTTTTCAGATCCAGCATTTAACCAACAGCAGTCCTTCCGATTGTGTACG
CCGGAGCATGTCAGACCACGAACCAGCTCTAAACTCTAAAACCAGCTCTT
TTGCGGCGGTTGAAAACCCGCTCTATTGTACTTTTGTATGCATAAGAGTA
CGGCGTACCGCAAAAACTTTTGTTTGATGTCGTTGTTGTGTTCGTCCTGT
GTATTATGGCAACAGCACTCGCATTTCATAGCAAGGGCGTGTCGTACACG
TGATTCAGTGTAAATGGTGCTACAATATTAACATTTTCTCAAATATAGCC
CCGCACAGCAAAGCATGCCCTTCTGTTTTTCACGCAGCAGTTGGGGTCAC
TTGACGTATGCATACATAGCTCGTTTGTCTGTTCAGCCGGAAGATTCCCC
GTGCATGTTTTTTTCGACATCCAGAGCAGCGAAGCTTGTTTTTCAGATTC
GACAAAGGTCGGATCATACTTGATGCTAAACCCAGCCAATAGAGGATTGT
CTCCAAGTTTTGCGAACGACGCCTTGGCGTACATTAGGCACAGTCCCTTT
CTCCCATCACATCAACTTGAGTCTTGGATTACCTGACCGCGTTGTAGCTT
GGTTACATGACAGTAGTCAAGTGATTGCATTTTGCAAGTTTTATTTTTGC
CCTATGGAGGAAGCAGTTCGAGTCTCAGCTAACCCCCCCCCCCCGCCGGC
CATTGTGCCCAGGTGATGGAAGAGGTGCAGATGCTCAAGGTCGCCGGGAA
GCACCCGAACGTGGTGACCATGCAGGCGTTCTTCGAGGACCAGGAGGCGT
ACTACATCGTCATGGAGATGTGCGAGGGAGGGGAGCTGTTCCACCGCCTC
GCCGACAAGGTGATTTTAGTTTTTTTTACCGACCACTACTGCTGTATTTG
CTGTTGGTTTTCCTAGCTTCGACACGGGTGTGTGTGCACACCTATGATAC
GTGAGTGTGTTGTTTAGCGTCAAACCGCGCTATGACTGGCCGACCTTAGT
TGTCTGTGTTGATGTTAGGATCGACCGCGCTACAGCAGTAGTAACCGGCT
TACCAAACATGAAACGACTCGAGTAGTCTTGTACTGTCCTGTAGAGGGAT
GCCGTAGTACACAACGCGAAGACGACTTGCGTGTCTGCGCGTTTCGTCGT
TCCGTCTGTCCCTCCTGGACGTTCGTTCGTTCAGCGTTATCACCTTCGGG
TGAAGTGGTGAAGTGAAGTACAACTTGGAAGTATGTTATGCTGGACGCTT
GCATCCATCAGCCGGGGGCCCAGGGGTGCCCCAAGATGGGTGGGGGAGAC
ATGTTTAATGCACCGAGCTGGTTGGTGAGTTAGGTGCTCTCGCGTATTTT
CTACTACTACTACGACCACTTCGAGTAGAAATACAACTCTTCTCTCCGCA
ACTTGTCCTTGTGCGCAGTTTGTTCTACGAGTACAGATACAATTCTCTCG
GCAACTTGTCTCGTGCGCGGTTTGTTGGCGGTTTCGTAGGCTTGCTGCTT
CAGTAGGGGTCCGCCTATAAGGGCGGGTGGCCGCAGTCCGGGTAACATTA
CTTGGCGCTGATACATCAAGAGCAATCAAGATGTTCTGTTTTTTTGTGAA
GGGTGGGTGCCGCGTGCGCGCTATAGGGGGGGGGGGGGGGGCAAACTTGG
GTTAAAACCACCCCGCGCTTTTTAGGGCCCGGCCTTTTCCGGGAGCGGCG
GNNNNNNNNNNTGTTTTTTTTTTTTTTGGGGGGGGGGGGGTGCGTGGGCG
TGTGGAGGGGGGGGGGGGGGGGGGACAAATCGGCTTAACACCCACCCGCC
CTGTATAGGGCCCTGACTGTTGCGGAAGCGGCGGAATTCGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGGTGTCTGTGGTTTGTAGCCCAGGCGTTCGAGT
ACACGCTTGTGTTGTATTCCCTACTTGTCTTCCGCGACATGTATGGATGC
TGTTGTAGGCAGCGGGTATTGCGATTGCCTGCACTCCCGTCTCAACGTAT
CTACACTCTTCCTCTTCGTACCTTCTGAACACGGCCGTTCGCGCGCAGTC
AGTCGAGTGTCGCTCGCGTTTTGTCTCGCTTCGGTGAAAGCGAGGGAGTG
GACATACTACTCCCCATTGGCCTGGTGCTGCCTATGCGTGGTTTTGATGG
ATCCCCCCCTTCATAGCAGTTGACGCCAGATTGCTGCGTGGTGTGATCCC
CCCCCCCCCCCTCCCCGCACAATTTTCACTTCACGATCGTCTGTCTCTTC
CTATCTTTTAAAAATCTGCTGCGGTCGAATTTTTCGGGTTCATATTTTTC
CTTGACTCCACAGGGGCGTTACTCCGAGGGCCAAGCGGCGCGCATCATGG
CGGAGGTAGCATCAGCGGTGGGATTCTTGCACAGGAATGGCATCGTACAC
TTCGACCTGGTGCGTGCGTGTGTGGTAACACAAGTGGTATCCGTAGCCTG
TGCATAGCGTGGTCCGCGTGTTGCTTGTACCGCCGTGTTGAGGCTTTGAC
GACAAGCGTTTGGTCTACAGGAAAGAGGAGGGAGGAGACCCTGCTGTTGC
GGGTATTGTCAATGATTGTGAAGATAATGACCACGATTCTCGTCTCTCCC
TCTCTGTGCACAAAGCGTGAAGTCTCCCTACCTCCTCCCTTGCTCGTCCC
GTCGTATCGTGCTGCTTTGTTTTCGGCGGATGGGTGGCTGGATGATGCTG
GCCTTCGGACTACGGTGTCGACCTTTGACGTCGATGCAGAAACCGGAGAA
CATCATGCTTGGTGAGGACAGAGCTAGCCATGTGAACTTTGTCGTTGTAT
GGATGCAAGACAGCGACGTTTGTGTTTTTGTCTCTCGGCGTTGTTGTTCG
CGGTGTGACGTAGGCCCTTGTCGCCCGCCTGTTGTTTTGTCCCCTTGTTT
TCGTAGCCCCAAATTTCTCTAGCTCAGCAGCTGCTGCTTCTCACCGTAGG
CGTCAACCCAAGCATCACCGAGAGAAGCGCCTCGTTTTCGCAAACCCTCA
TGAGAATCCTAACGTCGTTTCTGGTCTCTTGTCCCTTGTTTTCATTCTGT
TTGCCTTCCTAAAGCCGTGGGCGGTGATGACTGCGTACCCGAGGTGCGGC
TGGCGGACTTCGGGTCGGCCTTCAGGCAGTACCGCCAGATTAGCTGTGCT
CGAGACTACACCGCCGCCTAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7768:1224..6894+

>mRNA_E_fasciculatus_S2_contig7768.15930.1 ID=mRNA_E_fasciculatus_S2_contig7768.15930.1|Name=mRNA_E_fasciculatus_S2_contig7768.15930.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1299bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7768:1224..6894+ (Ectocarpus fasciculatus EfasUO2)
ATGAGTACAGCAGCTGTGGCGTCGGCAGCCAGCGGCATCGCCCGACGCTC
TCGCATCCGCGGCCTCGACGGCCTCACGCGGAGGAGAAGCTTCCATGGCA
CGCCTGCGGTATCGCCTTCCGGGGCAGCAGCAGCAGCACGCTCGGCATCA
GGAGCAGCGCTCGCCCCGAACCCACCGCTCCTCAGGTGCAGGTCTCTGAC
CTCGGCCCCTTCCGGCAGCGGCGGTGGCGGCGGCGGGAGGAGGAGCTACA
CCAGCGCCGCGCGCGTGACCTCCGCTGCGCGGCGCGGCGGTGATTGGTCC
GAAGACAAGTTTGGAGGAGGAGCAGATGGCATCAACCTCGGCGGGCAATT
TCTGGCGGGAGCGGTGGCTGTGGCAGGAGCTCTGGTAGCGACATCGTCGG
GGGGAGGAGGAGCAGACTGGGGTAACGACAGGGTCGGAGGAGACACCACG
AACTGGGGCAACGACAGGGCAGGCGGCGGCGGCGGCGGCAGGGGCGGGGT
GTGGTGTGATGCATCAGCAGCAGCGTCCAGGAAGCAGCATCATCATCTAT
CGTCCGCGGGGTCTTGCTCCCTCCGAGAGGCCTGCTGCCCGGCTGACAGT
CAGAACAACAACAAGCGTGGCGCTATGCTCAGCAGGAGCAGTAGTAGCAG
CAGCAGCAGCGGCAGCAGCAGCTGCGGGAGCGACGTGATACAGGTCGGTG
CGAGGGCCTTGTCGTGCCTGGAGCCGAGCGCAGCGGCGCGCGGCGGCAGC
GCGGCGGTGGCGCCGCCGGCACCCCCGAGCATCACCGACGTGTACTCCTT
CGAAGGCGCCTCGGAGCCGGTCATTGGCCGAGGGCAGCGCAGCGTCGTGA
GCACGGCAAGGCACCGCCTGACGGGGCAACCGGTGGCTGTGAAGAGGCTC
GCACGCGCGGAGACCACTCGCTTAGAGGTGATGGAAGAGGTGCAGATGCT
CAAGGTCGCCGGGAAGCACCCGAACGTGGTGACCATGCAGGCGTTCTTCG
AGGACCAGGAGGCGTACTACATCGTCATGGAGATGTGCGAGGGAGGGGAG
CTGTTCCACCGCCTCGCCGACAAGGGGCGTTACTCCGAGGGCCAAGCGGC
GCGCATCATGGCGGAGGTAGCATCAGCGGTGGGATTCTTGCACAGGAATG
GCATCGTACACTTCGACCTGAAACCGGAGAACATCATGCTTGCCGTGGGC
GGTGATGACTGCGTACCCGAGGTGCGGCTGGCGGACTTCGGGTCGGCCTT
CAGGCAGTACCGCCAGATTAGCTGTGCTCGAGACTACACCGCCGCCTAC
back to top