mRNA_E_fasciculatus_S2_contig7756.15924.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7756.15924.1
Unique NamemRNA_E_fasciculatus_S2_contig7756.15924.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7756.15924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW92_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 3.500e-149
Identity = 240/280 (85.71%), Postives = 248/280 (88.57%), Query Frame = 1 
Query:    1 MATIVVSVCHHDGRSTRTEKLRLLAEQNDAQEMALLLGALFEIPSHERVVGLASSTGSCGVIPLSASCRYPNLIFREEERLGRVFRVVTKDAASVDEVLFPISALTPPPSPGLSRLPPTWASSTPELRVGTAETVVVPELVSTGALTRQQGVLVVEMLRAEDPVVFAACRVAGAAAGISLSFSTPVEERRREWSGEAKRNFASMVKVVLHGKPGGGDGGSSVGEADGDMPRTGGKXXXXXXXXXXXXXXXQRCRGSQEVPESFQADALALADVALVTGKV 840
            MAT+VVS+CHHDGRSTRTEKLRLLAE+NDAQEMALLLGALFEIPSHERVVGLAS TGSCGVIPLSASCRYPNLIFREEERLGRVFR+VTKDAAS DEVLFPISALTPPPSPGLSRLPPTWASS PELRV TAETV +PELVSTGALTRQQGVLVVE LRAEDPVVFAACRVAGAA G+SL  STP  ERRREWSGEAKR+FASMVKVVL GK G GDGGSSVGEADG MPR GGK           XX  Q CR SQEVPESFQ DALALADVALVTGK+
Sbjct:    1 MATLVVSICHHDGRSTRTEKLRLLAERNDAQEMALLLGALFEIPSHERVVGLASVTGSCGVIPLSASCRYPNLIFREEERLGRVFRIVTKDAASEDEVLFPISALTPPPSPGLSRLPPTWASSPPELRVNTAETVAIPELVSTGALTRQQGVLVVERLRAEDPVVFAACRVAGAA-GVSLGSSTPAGERRREWSGEAKRSFASMVKVVLGGKVGRGDGGSSVGEADGGMPRRGGKGRGRRRAWAEEXXEQQLCRRSQEVPESFQVDALALADVALVTGKI 279
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BLAST of mRNA_E_fasciculatus_S2_contig7756.15924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T6_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 4.790e-102
Identity = 171/212 (80.66%), Postives = 178/212 (83.96%), Query Frame = 1 
Query:  205 RYPNLIFREEERLGRVFRVVTKDAASVDEVLFPISALTPPPSPGLSRLPPTWASSTPELRVGTAETVVVPELVSTGALTRQQGVLVVEMLRAEDPVVFAACRVAGAAAGISLSFSTPVEERRREWSGEAKRNFASMVKVVLHGKPGGGDGGSSVGEADGDMPRTGGKXXXXXXXXXXXXXXXQRCRGSQEVPESFQADALALADVALVTGKV 840
            RYPNLIFREEERLGR+FR+VTKDAAS DEVLFPISALT PPSPGLSRLPPTWASS PELRV TAETV VPELVS+GALTRQQG+LVVEMLRAEDPVVFAACRVAGAA G++L  STP  ERRREWSGEAKRNFASMVKVVL GK G GD GSSVGEADG   R GGK               QRCRGSQEVPESFQ DA+ALADVALVTGKV
Sbjct:   13 RYPNLIFREEERLGRIFRIVTKDAASEDEVLFPISALTLPPSPGLSRLPPTWASSPPELRVSTAETVAVPELVSSGALTRQQGMLVVEMLRAEDPVVFAACRVAGAA-GVTLGSSTPAGERRREWSGEAKRNFASMVKVVLGGKVGRGDVGSSVGEADGGTLRRGGKGRARGRAWAGEKEQ-QRCRGSQEVPESFQMDAIALADVALVTGKV 222
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7756.15924.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.500e-14985.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.790e-10280.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7756contigE_fasciculatus_S2_contig7756:2844..6283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size840
Hectar predicted targeting categoryother localisation
Exons3
Cds size840
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842437.464981-CDS-E_fasciculatus_S2_contig7756:2843..29551696842437.464981-CDS-E_fasciculatus_S2_contig7756:2843..2955Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7756 2844..2955 +
1696842437.4776492-CDS-E_fasciculatus_S2_contig7756:5080..51741696842437.4776492-CDS-E_fasciculatus_S2_contig7756:5080..5174Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7756 5081..5174 +
1696842437.4878862-CDS-E_fasciculatus_S2_contig7756:5649..62831696842437.4878862-CDS-E_fasciculatus_S2_contig7756:5649..6283Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7756 5650..6283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7756.15924.1prot_E_fasciculatus_S2_contig7756.15924.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7756 2844..6283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7756.15924.1

>prot_E_fasciculatus_S2_contig7756.15924.1 ID=prot_E_fasciculatus_S2_contig7756.15924.1|Name=mRNA_E_fasciculatus_S2_contig7756.15924.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=280bp
MATIVVSVCHHDGRSTRTEKLRLLAEQNDAQEMALLLGALFEIPSHERVV
GLASSTGSCGVIPLSASCRYPNLIFREEERLGRVFRVVTKDAASVDEVLF
PISALTPPPSPGLSRLPPTWASSTPELRVGTAETVVVPELVSTGALTRQQ
GVLVVEMLRAEDPVVFAACRVAGAAAGISLSFSTPVEERRREWSGEAKRN
FASMVKVVLHGKPGGGDGGSSVGEADGDMPRTGGKGRGRGKAWAEEEEEQ
QRCRGSQEVPESFQADALALADVALVTGKV
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mRNA from alignment at E_fasciculatus_S2_contig7756:2844..6283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7756.15924.1 ID=mRNA_E_fasciculatus_S2_contig7756.15924.1|Name=mRNA_E_fasciculatus_S2_contig7756.15924.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3440bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7756:2844..6283+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGACGATCGTGGTGTCCGTTTGTCACCACGACGGGCGGTCTACTCG
GACGGAGAAGCTGCGGCTGCTTGCAGAACAGAACGATGCTCAAGAGATGG
CGCTACTGCTAGGTGGGCGAAACGAAAAGAGCGGCGAGAGCGAGCGAGAG
CCGAGCAGAGAGTAGCCCCAACCGCCGCTCGCTGCTGTGTGCCCAGCGTG
TGTGTGTCAGAGAAGATCGAACAGAAAGCTGTTTTGGTGTCTGTTGCTGG
CTGGGGCTTGAGCAGGAGTGGAACAGCTGTTGCCCATAGCGGTAGTGCGC
CGCCGGGAAGCAAGGTGCATGGTGCATGCATGTACCACCCACGCCCGCCG
CTTCCAATACTGCTGCTCTTGCCGTAAAATTTGGAACCCTGGTTCTGTCG
CCAACCGACGCGATCTTCTTGACGGGTTAGTCTAGGCCTTTGGTCGAGAG
CCGGTGAAATCATTCAATTCCATCATCTAGTCTGCTACGCACCTACACAG
CAGCAGCAGCAGCAGCAGCAGCGGGGATGACAGACATGTGCTGTGTCTGT
CTGTCGCCCTGGCAAGCTGTCGTGGGGCAGCGAGATCGCGCGGCTACATT
GCCGCCTGCCGCCTGCGTATGCGTCTGGTTCACGAGTTCCAACCGTCGTG
TCTTGCAAAGCAGTTCTCAACTGATGTACGGATTTTTCGCGAGTGCTTTT
TATTTGGATCCGACGACACACGACAACGCGAATCATCGACATGGCTGTGT
ACACACGCGTGTCGCCTTTCCTGTGTACTGCACCGTTCACGGCCGAATGC
AAACAACTTCTGTACAGCAGTATATTCCAGAGAGCTATTGTACATATTCT
GTTGTGCACAAACAGCAGCAGCAGCAGCAGCAGCAGTAACGGCTTGTTTC
CTAGAAGAGGAGCCATCGGCGGAAGCGTAGCCGCAGTTTCATTTTGTTCT
CGTCTTGTTCTCGTCCGCTGCTCACGGAAATGCATGAACGGCGATGGTGC
CGCTACACACCGAAGACTCCTCGACACGACAGGCATGTGCAGGCAGGCGG
TGGCACACCTGCCTGAATGCTTACGCCACCTACACATGCACCGCAACGAC
CCGCCTATCGTAGATGCCTGGTAACCTTCTTTGTGTACATGCCCTCCCGA
AAAAAACGGGGGTCTCTATGTCTCTCCTGTTATTTCCAAACCTGTGTACA
TGGTAGAACTTCTGCTGGTGTACTTGTAGTATGTACGGAAATTTTCAAAA
GCGTACCCCCGTCGTTGTAACAGGTTATCTCTCTGTCTCCCTCTCTTTCT
CTGGTCAAGAACCGTTAAAACTAGCTGTGTTGAGGTAGTAAGACTTTGAC
GTTATGTGTGCTGCAAGAGCACAGCCGCAATGTGTGTGTTGCATGTGCTT
GATTTAGACTACTACTGCTGTTATGCGGGAGCGTTGTCGTTGTGTTCTCG
TTCGAGACTTGCGTTTATTCTACACCGTCGGGATCTTTAATACGAGCGTT
GCATGCTGCATGTTGTCGGGTGACAGCATGCTGTCGAGGCCGGGAGCTTT
CTTTGTTGGCGTTTTGCGTCCCCCCCTTGTGCAAATGGCAAGTATTACTG
ATGTGTTGGCAACGGCTTGTCTCATTGTCTACATGCTGCGGAGATAGATG
GCTAGACTACGCCCCTTCGAGGCGTGACTCGCCATTTGTCTTTGGGCTAC
AGCAAGCAGTCAAGTAGTCGCGAAGACAACCAACACACGCGAGGCCGCTA
CATTGGCACCCTCGTGAGAGGACGGTAAGCCAAGCAGCGTCCTTATCGTT
TACTGCGACACAGGGCCTTTTTTGAATGTTCGTTTCAAATTTTTCCTACC
CCACCCCCCACCCCCCCCCACCCGCACGAAAAAAGACGCGCAGGCCCACG
CGCAGGTTTCACCACATGTTCGGTGTGTTCTGGGTGGCGTACCGCATCAC
CATGGAGATGGTAGGGTGACGAACTACACGCGACTACTATACTTTGTAGA
CACCGCAATCATTGGCTGCACGCACACCAGAGCCGGGCGTCACGAACAAA
TATTTACGTGTACATGCTAGTTCCGAAACCGAATGAACCCGTGGTTGAGA
GTATGATGGACTATTTAATTTGCCCCCGCCCCCCGCCACGGGCATTCGAA
AACATCGGCATCGTCACACGTATTTTCATATCACGCTCATGAGGCAACGC
CCCTTTCTTCCCTGCCCGCTGTGTGCGCCTGCCGCAGGTGCCCTGTTTGA
GATCCCCAGCCACGAGCGAGTCGTCGGTCTGGCGTCATCGACGGGGTCGT
GCGGTGTCATTCCCCTGTCGGCATCATGCAGGTGATTTTATGTTATTATG
ATATATATCACTCGTGTCGACGGTGCCTTGCGCTTGGAACGCAACATTGT
TGTTGTCTGGTCGTCCAGGTGGCGCCTGGTTTGGTTCGTGCGTACGATTA
GCAGTGCCGGGATTGTCAGATGAAGCCTGACGCGTAGATTCTCTGGCCAA
TAGCCCCGGATGCTCTTTGTGGGGTCGACACATCGACCACAAGTACGGGG
CCTACGTGGATCTTACCCCGATAGGTCGGCACGTCGAGACTCGATGAAAA
TGCCGTGGATCTTTCGAATGTGATGGTGCCAAAGCTAGATTAATGCCCCG
CATGTTTGGGGTATGAACAAAAGTGTCGAAAGGAAGAATGAGCTGGGATG
AGTTCGCCCGCCTGCCCTTGCCCTATTGCCGCTCAACCTTACATGCTTTC
AACACACAAACCCATGGCATGGTATATTCGCGTGTCCGCCGTCGTCTCGA
CTCCAGATACCCCAACCTCATTTTCCGGGAAGAGGAGAGGTTAGGCCGCG
TTTTTCGAGTCGTCACAAAAGACGCCGCCAGCGTGGACGAGGTGCTCTTC
CCCATCTCGGCGCTGACGCCGCCGCCCTCGCCGGGCCTCAGCCGCCTCCC
TCCCACCTGGGCCTCCTCGACCCCCGAGTTGAGGGTGGGCACGGCCGAGA
CCGTGGTGGTTCCGGAGCTGGTGTCAACGGGCGCCCTCACGCGGCAGCAG
GGTGTGCTCGTGGTCGAAATGCTCCGCGCGGAGGACCCCGTGGTGTTTGC
GGCGTGTCGCGTTGCGGGTGCTGCTGCTGGAATAAGCCTTTCCTTTTCTA
CCCCAGTCGAGGAGCGGAGACGGGAGTGGAGCGGGGAGGCCAAGAGGAAC
TTTGCTTCCATGGTCAAGGTCGTGCTTCACGGCAAGCCTGGCGGGGGTGA
CGGAGGCTCTAGCGTTGGCGAAGCAGATGGTGACATGCCTCGCACGGGAG
GGAAAGGGCGGGGAAGGGGGAAGGCGTGGGCGGAGGAGGAGGAAGAGCAG
CAGCGTTGCAGAGGCTCGCAAGAGGTGCCGGAGTCGTTCCAGGCGGACGC
GCTAGCTCTGGCGGACGTTGCACTTGTCACTGGGAAGGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7756:2844..6283+

>mRNA_E_fasciculatus_S2_contig7756.15924.1 ID=mRNA_E_fasciculatus_S2_contig7756.15924.1|Name=mRNA_E_fasciculatus_S2_contig7756.15924.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=840bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7756:2844..6283+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGACGATCGTGGTGTCCGTTTGTCACCACGACGGGCGGTCTACTCG
GACGGAGAAGCTGCGGCTGCTTGCAGAACAGAACGATGCTCAAGAGATGG
CGCTACTGCTAGGTGCCCTGTTTGAGATCCCCAGCCACGAGCGAGTCGTC
GGTCTGGCGTCATCGACGGGGTCGTGCGGTGTCATTCCCCTGTCGGCATC
ATGCAGATACCCCAACCTCATTTTCCGGGAAGAGGAGAGGTTAGGCCGCG
TTTTTCGAGTCGTCACAAAAGACGCCGCCAGCGTGGACGAGGTGCTCTTC
CCCATCTCGGCGCTGACGCCGCCGCCCTCGCCGGGCCTCAGCCGCCTCCC
TCCCACCTGGGCCTCCTCGACCCCCGAGTTGAGGGTGGGCACGGCCGAGA
CCGTGGTGGTTCCGGAGCTGGTGTCAACGGGCGCCCTCACGCGGCAGCAG
GGTGTGCTCGTGGTCGAAATGCTCCGCGCGGAGGACCCCGTGGTGTTTGC
GGCGTGTCGCGTTGCGGGTGCTGCTGCTGGAATAAGCCTTTCCTTTTCTA
CCCCAGTCGAGGAGCGGAGACGGGAGTGGAGCGGGGAGGCCAAGAGGAAC
TTTGCTTCCATGGTCAAGGTCGTGCTTCACGGCAAGCCTGGCGGGGGTGA
CGGAGGCTCTAGCGTTGGCGAAGCAGATGGTGACATGCCTCGCACGGGAG
GGAAAGGGCGGGGAAGGGGGAAGGCGTGGGCGGAGGAGGAGGAAGAGCAG
CAGCGTTGCAGAGGCTCGCAAGAGGTGCCGGAGTCGTTCCAGGCGGACGC
GCTAGCTCTGGCGGACGTTGCACTTGTCACTGGGAAGGTA
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