mRNA_E_fasciculatus_S2_contig7753.15920.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7753.15920.1
Unique NamemRNA_E_fasciculatus_S2_contig7753.15920.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7753.15920.1 vs.
Match: KIF-binding (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI61_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 3.470e-33
Identity = 68/75 (90.67%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:    1 RQLDASQRGDGVKVSFDPGEWSRNACFLADYYSGLGRFTEAGRCLLAAQAVLQSEGSAAATAAVPTGDKDNAFLP 225
            RQLDASQRGDGVKVSFDPGEWSRNACFLADYYSGLGRFT AGRCLLAAQAVLQ EGSAAA   VPTG KDNA LP
Sbjct:  340 RQLDASQRGDGVKVSFDPGEWSRNACFLADYYSGLGRFTGAGRCLLAAQAVLQPEGSAAA---VPTGGKDNASLP 411
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7753.15920.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
KIF-binding3.470e-3390.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7753contigE_fasciculatus_S2_contig7753:2051..2836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score132.5
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog2880.D7FI61
Preferred nameKIAA1279
Model size337
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000902,GO:0000904,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006810,GO:0006839,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007399,GO:0007409,GO:0007417,GO:0008092,GO:0008150,GO:0009653,GO:0009987,GO:0016043,GO:0019894,GO:0021545,GO:0021675,GO:0021952,GO:0021953,GO:0021954,GO:0021955,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048468,GO:0048483,GO:0048484,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048880,GO:0048881,GO:0048892,GO:0048894,GO:0048915,GO:0048918,GO:0048925,GO:0048929,GO:0051179,GO:0051234,GO:0061564,GO:0071840,GO:0106027,GO:0120036,GO:0120039,GO:1990535
Exons2
EggNOG free text desc.mitochondrial transport
EggNOG OGs2CG8G@1,2QPZT@2759
Ec32 ortholog descriptionKIF-1 binding protein
Ec32 orthologEc-10_003680.1
Cds size333
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842437.1623578-CDS-E_fasciculatus_S2_contig7753:2052..22381696842437.1623578-CDS-E_fasciculatus_S2_contig7753:2052..2238Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7753 2053..2238 -
1696842437.1737065-CDS-E_fasciculatus_S2_contig7753:2689..28361696842437.1737065-CDS-E_fasciculatus_S2_contig7753:2689..2836Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7753 2690..2836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7753.15920.1prot_E_fasciculatus_S2_contig7753.15920.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7753 2053..2836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7753.15920.1

>prot_E_fasciculatus_S2_contig7753.15920.1 ID=prot_E_fasciculatus_S2_contig7753.15920.1|Name=mRNA_E_fasciculatus_S2_contig7753.15920.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
RQLDASQRGDGVKVSFDPGEWSRNACFLADYYSGLGRFTEAGRCLLAAQA
VLQSEGSAAATAAVPTGDKDNAFLPPPPPPPGGKDEREETGEEGGDAKSG
GDSRGSTQAGG
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mRNA from alignment at E_fasciculatus_S2_contig7753:2051..2836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7753.15920.1 ID=mRNA_E_fasciculatus_S2_contig7753.15920.1|Name=mRNA_E_fasciculatus_S2_contig7753.15920.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=786bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7753:2051..2836- (Ectocarpus fasciculatus EfasUO2)
AGACAGCTAGACGCCTCTCAGCGCGGTGACGGGGTGAAGGTCTCGTTCGA
TCCGGGAGAGTGGAGCCGCAACGCGTGCTTCCTGGCGGACTACTACTCCG
GCCTGGGCAGGTTCACGGAAGCCGGGAGGTGTCTCCTCGCGGCGCAGGTT
AGCACGGAGAGAGACGGGCCTATTTGCCCGAAAAAGACACCTGTTGACTG
TTAGCCCGCCTAGTGGCCCCAAGAATACGTAGTAGAGTCAAAGAGCGTCC
TTTCGATTTTTTCGATGTTCCCTGGGGTGTTTGGCGACACGGCGGTTTTT
GTCTCCACGCGAAGCAGGCTAGCCGCTAGGCGGAAACGACACCCACTACA
GCAGTACTCTTATTTCCCGAACTACAGCACGTAAAAAAAAACGGTTCAGA
ACTGGTTGGTTGCAGCTGCACCCTTTCATTTCCCGTGATCGGGCGGTGTC
TGTCTCCTCACAGCCCTGGCTGGTCCAAAATCCAGCGTTCGTGTCGGATG
TCGTCGTCCAGCGCTAGTGGCACTAGTAGCTCCGGTGGTAGCTGGTTAAT
CCTAACAATACAAGCCCCCCTGTGCCGCCTTCTGAACTCTACCCATAGGC
AGTCCTGCAGTCCGAGGGATCGGCGGCGGCGACGGCGGCGGTGCCGACTG
GGGACAAAGATAACGCCTTCTTGCCTCCGCCGCCCCCGCCGCCGGGAGGA
AAGGACGAACGGGAGGAAACGGGAGAGGAAGGGGGCGATGCAAAGAGCGG
CGGCGACAGCCGGGGGAGCACGCAGGCAGGCGGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7753:2051..2836-

>mRNA_E_fasciculatus_S2_contig7753.15920.1 ID=mRNA_E_fasciculatus_S2_contig7753.15920.1|Name=mRNA_E_fasciculatus_S2_contig7753.15920.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7753:2051..2836- (Ectocarpus fasciculatus EfasUO2)
AGACAGCTAGACGCCTCTCAGCGCGGTGACGGGGTGAAGGTCTCGTTCGA
TCCGGGAGAGTGGAGCCGCAACGCGTGCTTCCTGGCGGACTACTACTCCG
GCCTGGGCAGGTTCACGGAAGCCGGGAGGTGTCTCCTCGCGGCGCAGGCA
GTCCTGCAGTCCGAGGGATCGGCGGCGGCGACGGCGGCGGTGCCGACTGG
GGACAAAGATAACGCCTTCTTGCCTCCGCCGCCCCCGCCGCCGGGAGGAA
AGGACGAACGGGAGGAAACGGGAGAGGAAGGGGGCGATGCAAAGAGCGGC
GGCGACAGCCGGGGGAGCACGCAGGCAGGCGGG
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