mRNA_E_fasciculatus_S2_contig7737.15903.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7737.15903.1
Unique NamemRNA_E_fasciculatus_S2_contig7737.15903.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7737.15903.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 2.180e-131
Identity = 203/216 (93.98%), Postives = 207/216 (95.83%), Query Frame = 1 
Query:    1 MVDTSAVVLESVVVEEPPAVLESLKGDAVG--AGTGDAATPGVDELGPDAEEPERQQNGRPFSPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGARSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGGSGGGASECGAGQEADDTCGRFFIKKRRSSIEELGTTLPGEVAFAN 642
            MVDTSAVVLESVVVEEPP VL+SLKG AVG  AG GDAATPGVDE+GP AEEPE  QNGRPFSPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMG+RSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGG GGGASECGAGQEA+DTCGRFFIKKRRSSIEELGTTLPGEVAFAN
Sbjct:    1 MVDTSAVVLESVVVEEPPVVLQSLKGAAVGDGAGAGDAATPGVDEVGPGAEEPE--QNGRPFSPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGSRSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGGRGGGASECGAGQEAEDTCGRFFIKKRRSSIEELGTTLPGEVAFAN 214
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BLAST of mRNA_E_fasciculatus_S2_contig7737.15903.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.210e-21
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:  190 MKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMG----------ARSEGADNTP-----SKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELG 498
            M +P +S   +++ +M K FGV+ +Q  RTQALLRLGVT++D+++AERL            AR+EG  +       SKEE LLG+T +++SF KAL+VLG+  A+VEEER+RRLG+LG
Sbjct:   72 MLTPGLSRGKDQETIMQKQFGVSMEQMKRTQALLRLGVTEDDLKVAERLFAELPGGEELRKARAEGVISPAIPRKLSKEERLLGLTKSEISFCKALEVLGVDMAIVEEERARRLGQLG 189
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BLAST of mRNA_E_fasciculatus_S2_contig7737.15903.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.740e-16
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:  235 MVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGARSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELG 498
            M K  G T +Q LR QALL+LGVT+EDVR+A  L+  R+   +N  +K EWLL ++  QMS  KAL+ LG+S+ ++EE+R R LG+LG
Sbjct:    1 MGKFIGATPQQVLRVQALLKLGVTEEDVRLAAELLRPRT---NNEGTKAEWLLSLSMEQMSRLKALEELGVSQDMLEEDRGRILGDLG 85
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BLAST of mRNA_E_fasciculatus_S2_contig7737.15903.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.200e-14
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:  181 SPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGARSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGIS-------EAV-------VEEERSRRLGELGSGG 507
            SP M +P +S   +++ VM K+FGV+ +Q  RTQALLRLGVT+ED+R+AERL  A   G +   SKEE LLG+T +++SF+KAL+ + +        +AV       VE   + RLG LG GG
Sbjct:  487 SPNMTTPGMSRDKDQETVMGKYFGVSVEQMKRTQALLRLGVTEEDLRVAERLF-AVLPGNEELVSKEERLLGLTRSEISFYKALEGVRVQRCGACADDAVNPGANVEVEVAIAERLGSLGIGG 608
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BLAST of mRNA_E_fasciculatus_S2_contig7737.15903.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.070e-13
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:  175 PFSPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGARSEGADNTP-SKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELG 498
            P S      H+ST Y K+++M +H+G+   Q  R +ALLR+GV +ED+ IA+RL+      +++TP +KEE LLG T  Q    KAL +LG++E   +  R+  L  LG
Sbjct:  202 PSSKDQPEEHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRVKALHILGLTEESFDRCRAVMLSSLG 310
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BLAST of mRNA_E_fasciculatus_S2_contig7737.15903.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT43_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 5.370e-9
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:  235 MVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGARSEGADNTP-SKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELG 498
            M +H+G+   Q  R +ALLR+GV +ED+ IA+RL+      +++TP +KEE LLG    Q    KAL +LG++E   +  R+  L  LG
Sbjct:    1 MARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYNSQQRQRMKALHILGLTEESFDRCRAVMLSSLG 89
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BLAST of mRNA_E_fasciculatus_S2_contig7737.15903.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQR6_THAPS)

HSP 1 Score: 53.9 bits (128), Expect = 1.910e-5
Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  274 RTQALLRLGVTDEDVRIAERLMGARSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELG 498
            R++ L +LGV++EDV++A RLM  +     + P+K E +LG   ++++  KAL++LG SE  VE E ++ +G LG
Sbjct:   19 RSKGLEKLGVSEEDVQLAARLM-QQIPTCTSDPNKAERILGFASSRLAREKALRLLGASEEEVEVENAKTMGALG 92
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7737.15903.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized2.180e-13193.98protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0... [more]
Uncharacterized4.210e-2148.31protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.740e-1651.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.200e-1445.53protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized2.070e-1340.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.370e-940.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.910e-540.00protein n=1 Tax=Thalassiosira pseudonana TaxID=351... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7737contigE_fasciculatus_S2_contig7737:4535..7038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size642
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002730.1
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842435.8400905-CDS-E_fasciculatus_S2_contig7737:4534..49001696842435.8400905-CDS-E_fasciculatus_S2_contig7737:4534..4900Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7737 4535..4900 +
1696842435.8509986-CDS-E_fasciculatus_S2_contig7737:5612..57001696842435.8509986-CDS-E_fasciculatus_S2_contig7737:5612..5700Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7737 5613..5700 +
1696842435.860657-CDS-E_fasciculatus_S2_contig7737:6850..70381696842435.860657-CDS-E_fasciculatus_S2_contig7737:6850..7038Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7737 6851..7038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7737.15903.1prot_E_fasciculatus_S2_contig7737.15903.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7737 4535..7038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7737.15903.1

>prot_E_fasciculatus_S2_contig7737.15903.1 ID=prot_E_fasciculatus_S2_contig7737.15903.1|Name=mRNA_E_fasciculatus_S2_contig7737.15903.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=214bp
MVDTSAVVLESVVVEEPPAVLESLKGDAVGAGTGDAATPGVDELGPDAEE
PERQQNGRPFSPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLG
VTDEDVRIAERLMGARSEGADNTPSKEEWLLGVTYAQMSFHKALQVLGIS
EAVVEEERSRRLGELGSGGSGGGASECGAGQEADDTCGRFFIKKRRSSIE
ELGTTLPGEVAFAN
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mRNA from alignment at E_fasciculatus_S2_contig7737:4535..7038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7737.15903.1 ID=mRNA_E_fasciculatus_S2_contig7737.15903.1|Name=mRNA_E_fasciculatus_S2_contig7737.15903.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2504bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7737:4535..7038+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTGACACCTCTGCCGTGGTGCTGGAGAGTGTTGTCGTAGAAGAACC
TCCCGCCGTCCTGGAGAGTCTAAAAGGAGACGCTGTCGGGGCTGGTACAG
GCGATGCGGCTACTCCTGGCGTTGATGAGCTAGGGCCTGACGCTGAGGAG
CCGGAGCGGCAGCAGAATGGCCGGCCGTTTTCTCCCCAAATGAAGTCCCC
TCACATAAGTACGCTCTACGAGAAGCAGGACGTGATGGTGAAGCATTTCG
GGGTGACACAGAAGCAGGCGCTGCGCACACAGGCGCTGCTGAGGCTCGGA
GTTACTGATGAGGACGTCCGGATTGCCGAGCGATTAATGGGGGCACGTTC
AGAAGGGGCGGACAATGTGAGCGTACAATATCGCCGGTCGGGCGGCTATT
TTTAGTCACAGACAGCGGGGTTGGTTGAAGAGGCGGCGTCGAAAACGCGA
GTTTATGGATACGCGTGCGGTGCTTGAACCATGTAAAACACAGTGGATTT
CCTAGCCCTAGATGATCTCTATCGGAGCTCTAGGAGGTGTGCTTGGGAGT
CTATTTGTTCCCTCCTCTGTTCCTGTTTATTTCTTTGGTCGCCCACGACG
TGTATGCAGTATGCAAACGCGAGCTTCGCTTTCTAAATATATATTCCGTA
ATCACCTCGGTCGGCTATTCGTGTGTGTCCAGACGGAGATTTCTGGTGTC
GTCAGTCTTGCCCATGCCTTGCTTGCTTGCTTCCTTGCTGTGGTCGACCG
TTACTGCACGAATCTACTTAGGCAGGAGGCCACAGCAGAGACACTTTGCA
TCCGTGAATGTGGCGTCGACCCGAGAACACAAGCTGCATGCAGAACACAT
TGCTCGTTTTTGTATCCACCGAAGCTGCTGACGATTTGATTGTTGTACTC
TTGAATCCTTCTTTGAACCCGGTGCACTTGGAACAAGAGTTGGCGAATTA
TGGGCTGCTGACTCTACGCCCTTTTTTTTCCAAGCACACTCTTGACGCCT
ACTACAGCAGTTGCTTTGTTATCGGACGCGACACTCTTCCGACACGCCCC
GTCTGTCCCGGTTATCCCACGTCCTCAGACGCCCTCCAAGGAAGAATGGC
TGCTGGGAGTGACATACGCACAGATGAGCTTTCACAAGGCGCTGCAGGTG
TTGGGGATATCCGAAGGTGAGAGAGGCCCGAGCCGTAGTTACATGCCTGC
CTCAACGACTTGACCGACACCAGCTGCTCATGGGCTGCACTCGCGTCCCG
CCTGAACCAACCCATCCCGAGAACACCCCGAACGGGCTACTGATGCCCTG
CTGTCGAGTTCGGGTACTCGAGCGCGATGTGATGTTAATTTTGTGTGTGT
GTGTTCTATTGTGTAGCTGTACCTGGGCAGCATCTGGTATATACCGTCTC
TGGAGTCCCGGTCTGAACCTAACCCTGTTGACCTGCCTCCCCTCACAAAG
AAACATACTTGAGGTGACATGTACACAGAGGAATGTCATCCCTCCGTTCT
GCGGCCCCTTTGCCATGACAATATCCTGTCACAGAAACCCCGAGGTTTTT
CGTGCTTTGTTCTGAAGATTGACTGCTGTGTTCTTCTGCGCATTAGTCTG
AGGTGATAGTGCGTTGGTTGGTTCGTTGGCCCCTCTGCTTCAACGTTGGT
TCCGACCGGTGGTTGCAGGCCTTTCGGGCACGCACAGAAGGTCAGCAGCG
TTCCCTCCATTTATTATCTCTTTATTACAAAGGCTGCTGTGTTCGGCCGA
GGGAGGTACCAGAAGCCTTTGTGCGTTCCGCCGCAAATCATGTGTCGTAT
TGCGGCGGTCGTGGTTTTGTTTCCCATGACCCGAACATTTCGTCCCACTA
TGTATGTACTGAAGCAGTACCAATAAAAGTGTTGATTTTCGATCGACTGA
GAAAAAGGCACACGAATACAAGTATAACGTCTCGTCGAAGCTTGTGAGGT
GCCGCTGTTTGTTGTGATGATGGGTCGAAAAACTGTTGCCTTGGGGTTAC
ACACGCAATAAACATCCTCCTTTCATGGCCAAACCCAGCACGTTGTCCAC
GGATACCTTGTGGATTCGTTTTGAAATGTGTCGCGTAACGATCAAGCGCA
GGTACTTTAAGTTGTAGCTTTTTCCTCATGATCGGTCCCCGGTTTGGAAT
CCTACATACATGTGGTAACCTCTTAAGAAGAGACTCATTTCCTGTACAAG
TATTGCACCGATAGACGTCGGTCGGCTACAAATACAAGTCAAGTAAAAAT
CATGTCCCTCTTGTACTTTTCTGTACCATATGTTGGAACTATCGCTTGGT
GCTCTCTCTCACAAAGCTGTGGTGGAGGAAGAGAGGTCGCGGCGGCTTGG
CGAGCTCGGGTCTGGCGGGAGTGGAGGGGGGGCGTCGGAATGTGGAGCTG
GTCAGGAGGCGGACGACACGTGCGGTAGGTTCTTCATCAAGAAGCGGCGG
TCATCGATCGAAGAACTGGGAACCACACTACCCGGGGAGGTGGCCTTTGC
AAAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7737:4535..7038+

>mRNA_E_fasciculatus_S2_contig7737.15903.1 ID=mRNA_E_fasciculatus_S2_contig7737.15903.1|Name=mRNA_E_fasciculatus_S2_contig7737.15903.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=642bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7737:4535..7038+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTGACACCTCTGCCGTGGTGCTGGAGAGTGTTGTCGTAGAAGAACC
TCCCGCCGTCCTGGAGAGTCTAAAAGGAGACGCTGTCGGGGCTGGTACAG
GCGATGCGGCTACTCCTGGCGTTGATGAGCTAGGGCCTGACGCTGAGGAG
CCGGAGCGGCAGCAGAATGGCCGGCCGTTTTCTCCCCAAATGAAGTCCCC
TCACATAAGTACGCTCTACGAGAAGCAGGACGTGATGGTGAAGCATTTCG
GGGTGACACAGAAGCAGGCGCTGCGCACACAGGCGCTGCTGAGGCTCGGA
GTTACTGATGAGGACGTCCGGATTGCCGAGCGATTAATGGGGGCACGTTC
AGAAGGGGCGGACAATACGCCCTCCAAGGAAGAATGGCTGCTGGGAGTGA
CATACGCACAGATGAGCTTTCACAAGGCGCTGCAGGTGTTGGGGATATCC
GAAGCTGTGGTGGAGGAAGAGAGGTCGCGGCGGCTTGGCGAGCTCGGGTC
TGGCGGGAGTGGAGGGGGGGCGTCGGAATGTGGAGCTGGTCAGGAGGCGG
ACGACACGTGCGGTAGGTTCTTCATCAAGAAGCGGCGGTCATCGATCGAA
GAACTGGGAACCACACTACCCGGGGAGGTGGCCTTTGCAAAT
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