mRNA_E_fasciculatus_S2_contig7708.15882.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7708.15882.1
Unique NamemRNA_E_fasciculatus_S2_contig7708.15882.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7708.15882.1 vs.
Match: Palmitoyltransferase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG7_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.710e-44
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:   34 MAGFLVVMLINVLLLVLAVFLMFFADPDSHGYGGQLYRLVCEGGPRMLSAGMRLVFGEACAGRVSECGNWVMNKPNRLMQG 276
            MAGFLVVM INVLLLVLA+FLMFFADP+SHGYGGQLYRLVCEGGPRMLSAGMRLVFGEACAG+VSECGNWVMNKPNRLMQG
Sbjct:    1 MAGFLVVMSINVLLLVLAIFLMFFADPESHGYGGQLYRLVCEGGPRMLSAGMRLVFGEACAGKVSECGNWVMNKPNRLMQG 81
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BLAST of mRNA_E_fasciculatus_S2_contig7708.15882.1 vs.
Match: Palmitoyltransferase ((Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L085_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.720e-41
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:   34 MAGFLVVMLINVLLLVLAVFLMFFADPDSHGYGGQLYRLVCEGGPRMLSAGMRLVFGEACAGRVSECGNWVMNKPNRLMQG 276
            MAGFL+VM INVLLLVLA+FLMF ADP+SHGYGGQLYRLVCEGGPRMLS GMRLVFGEACAGRVSECGN VMNKPNRLMQG
Sbjct:    1 MAGFLLVMSINVLLLVLAIFLMFIADPESHGYGGQLYRLVCEGGPRMLSTGMRLVFGEACAGRVSECGNLVMNKPNRLMQG 81
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7708.15882.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Palmitoyltransferase2.710e-4495.06n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Palmitoyltransferase3.720e-4191.36(Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7708contigE_fasciculatus_S2_contig7708:5169..6438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score159.1
Seed ortholog evalue1e-36
Seed eggNOG ortholog2880.D8LSG7
Preferred nameZDHHC4
Model size278
KEGG koko:K18932,ko:K20003
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1312@2759
EC2.3.1.225
Cds size276
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842433.7712243-CDS-E_fasciculatus_S2_contig7708:5168..52871696842433.7712243-CDS-E_fasciculatus_S2_contig7708:5168..5287Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7708 5169..5287 +
1696842433.7830436-CDS-E_fasciculatus_S2_contig7708:6281..64381696842433.7830436-CDS-E_fasciculatus_S2_contig7708:6281..6438Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7708 6282..6438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7708.15882.1prot_E_fasciculatus_S2_contig7708.15882.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7708 5169..6438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7708.15882.1

>prot_E_fasciculatus_S2_contig7708.15882.1 ID=prot_E_fasciculatus_S2_contig7708.15882.1|Name=mRNA_E_fasciculatus_S2_contig7708.15882.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=92bp
PGSVQDWPIRNMAGFLVVMLINVLLLVLAVFLMFFADPDSHGYGGQLYRL
VCEGGPRMLSAGMRLVFGEACAGRVSECGNWVMNKPNRLMQG
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mRNA from alignment at E_fasciculatus_S2_contig7708:5169..6438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7708.15882.1 ID=mRNA_E_fasciculatus_S2_contig7708.15882.1|Name=mRNA_E_fasciculatus_S2_contig7708.15882.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7708:5169..6438+ (Ectocarpus fasciculatus EfasUO2)
CCAGGTTCCGTCCAGGACTGGCCCATCAGAAACATGGCGGGCTTCCTGGT
GGTGATGCTGATAAACGTGCTGCTCTTGGTGCTGGCCGTTTTCCTCATGT
TTTTCGCGGACCCGGATAGGTGAGAGAGGCGTTCGGCGTAGTTACATATA
ATAAGCCAAATGCGTGCAGCAGGTATTACTTAACTAGTCTACAGTATCAT
GTCCTGCTGTGTCCGTGTGCATAGTTTGCTATGCATAGAACGAACCCACA
CGACCGATGTATCTGTCCGCTGGGCTTTGCGATCTCTATCTTTGTGCCGA
AGGCGATGTTCTGCGGGGGGAGAGAGCTGCTACTTGTCGCTGTTACAATA
CATATGCAAAATACGGTCTCAGCCTCCTGCCTTCGTGCCTGGCAGTATAT
AGGCGGTATCGGACACGGGAAGAAGCGTTCGGCCTTGGTCTGGTTCGGCC
ACGCTCAAAGCAGCGTTCCGTATCATGCTGCTGTAGGTTGTAGATACTTG
ACGCTACCTTTCCATGCATGCCTCCGCGGATGGACTACAAGGCTCTTGGT
ATGCAAGCGTTGAATTTCGCCAGCGACAAACTCATCGGGCACGAGCCGGC
TTCGATCCAACCCGCTCGTAATGTTGTACAACAGCAGTACTGCTGTATGT
AATCTACTGCTGTATGTAATCAGGCTACAATTGTATCCGTCGTGCGCGCT
CGCGTCTGTGCTTGTCAGAAACATGGAACTACTGCTGAGCATAGGGTTTC
AACCCACTCACTGCTGTAAAGACTAATACTTCCACACGTCCCCCTCGACA
GTGGGTATATCTAGAACGGGTAGTCTTTTCTGTGCTTGTATTCATTTTTC
CTAATTGTTGTGAACTCTTGCTGCTGCCACATGGCAGTGTGTTCGCGTTT
GCAACTCCAAAACGGGCCTTCGACATATTGTCAGCTACAAAGCTGTGTCA
CCAAAATCTACCACCCTCAATGCACCGCGTGCCCCCCCCCTCCCCCCTCT
CGCTGTCTCTGTCTCTCTCATCCATCCACACTTCGTTTCCTGTTTACTCT
GCGCTCAATCCCCCGCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCACG
GAATGCACTGAAGCCATGGCTACGGCGGGCAGCTGTATCGCCTCGTGTGC
GAGGGGGGCCCGCGGATGCTAAGCGCGGGGATGCGCCTGGTCTTCGGGGA
GGCCTGCGCGGGGAGGGTCTCGGAGTGCGGCAACTGGGTCATGAACAAGC
CCAACCGCCTTATGCAGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7708:5169..6438+

>mRNA_E_fasciculatus_S2_contig7708.15882.1 ID=mRNA_E_fasciculatus_S2_contig7708.15882.1|Name=mRNA_E_fasciculatus_S2_contig7708.15882.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7708:5169..6438+ (Ectocarpus fasciculatus EfasUO2)
CCAGGTTCCGTCCAGGACTGGCCCATCAGAAACATGGCGGGCTTCCTGGT
GGTGATGCTGATAAACGTGCTGCTCTTGGTGCTGGCCGTTTTCCTCATGT
TTTTCGCGGACCCGGATAGCCATGGCTACGGCGGGCAGCTGTATCGCCTC
GTGTGCGAGGGGGGCCCGCGGATGCTAAGCGCGGGGATGCGCCTGGTCTT
CGGGGAGGCCTGCGCGGGGAGGGTCTCGGAGTGCGGCAACTGGGTCATGA
ACAAGCCCAACCGCCTTATGCAGGGG
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