mRNA_E_fasciculatus_S2_contig770.15873.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig770.15873.1
Unique NamemRNA_E_fasciculatus_S2_contig770.15873.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY7_ECTSI)

HSP 1 Score: 647 bits (1670), Expect = 4.500e-226
Identity = 352/426 (82.63%), Postives = 369/426 (86.62%), Query Frame = 2
Query:  149 LTLFMWRLRCDVKVAILVVCCLARATAAAEEATRSSEASQVDALAGLNXXXXXXXXXXXXXXXXVEGFVDAGREE--GPAGPSAA---------QVDDQRGGTVRHTAADTRAGLESDFDDSSIDGEGEKQQEDRNGEEGGSSGGGTWGWARDGRQFGPAWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQRGGGMFGALDGGRAEFTCTA-----HKSCEVCHLLTRDKPAAMAPPPHPTRKRVD 1378
            LTLFMWR RC VKVAILVVCCLARATAAAE A  SSE+SQ DALAGLN      XXXXXXXX  VE FVDAGR+E  GPAGP AA         Q+DDQRGGTV      ++A  ESD  DSS++GEGEK+QEDRNGEE GSS GGTWGW RDGR+FGPAWL VATF HEVWLLLQHANILLNPLCQRLDRSYG+ LLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKI+LISLDAQRRWSPT+GIMRLLMDHWHMSSFKD LLC+KRMSLQ FDTATHALIVRDMVRWDE+SA RT GLHRKLI+VSV+WAMHAIANLVTRVSTATLVVEVAKSLVG WGS  GK PPSWRQRGGGMFGALDGGRAEFTCT      HKSCEVCHLLTRDKPAA+APPPHPTRKRVD
Sbjct:    9 LTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLXXXXXXXXHQVEDFVDAGRQERGGPAGPPAARVEVGRGVGQIDDQRGGTV------SQADAESDLYDSSVEGEGEKKQEDRNGEEDGSSDGGTWGWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 428          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB7_9PHAE)

HSP 1 Score: 605 bits (1559), Expect = 4.160e-209
Identity = 328/418 (78.47%), Postives = 343/418 (82.06%), Query Frame = 2
Query:  149 LTLFMWRLRCDVKVAILVVCCLARATAAAEEATRSSEASQVDALAGLNXXXXXXXXXXXXXXXXVEGFVDAGREEG--PAGPSAA---------QVDDQRGGTVRHTAADTRAGLESDFDDSSIDGEGEKQQEDRNGEEGGSSGGGTWGWARDGRQFGPAWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQRGGGMFGALDGGRAEFTCTA-----HKSCEVCHLLTRDKPAAMAPPP 1354
            LTLFMWRLRCDVKVAILVVC LARATAAAEEA  SSE SQ  ALAGLN                VE FVDAGR+EG  PAGPSAA         Q+DDQR G VR  AA      ESD D SSI+GE E++Q            GG+WGWARDGR+FGPAWL VATFVHEVWLLLQHANILLNPLCQRLDRSYGV LLRRRLYWVIAGVL+AYWSREVLSMLIASPYASPLTLKMVA SSLYHVGKI+LIS DAQRRWSPT+GIMRLLMDHWHMSSFKDALLCVKRMSLQ FDTATHALIVRDMVRWDE+SAGRT GLH+KLIIVSV+WAMHAIANLVT+VSTATLVVEVAKSLVG WGSS GK PPSWRQRGGGMFG LDGGRAEFTCTA     HKSCEVCHLLTRDKPAA+ PPP
Sbjct:    9 LTLFMWRLRCDVKVAILVVCSLARATAAAEEAITSSEVSQAGALAGLNDKLDRLTSKLESLTHQVEDFVDAGRQEGGGPAGPSAARVEAGRGVGQIDDQRRGIVRPAAA------ESDLDGSSIEGEAEEKQXXXXXXXXXXXDGGSWGWARDGRRFGPAWLVVATFVHEVWLLLQHANILLNPLCQRLDRSYGVGLLRRRLYWVIAGVLSAYWSREVLSMLIASPYASPLTLKMVATSSLYHVGKIILISRDAQRRWSPTMGIMRLLMDHWHMSSFKDALLCVKRMSLQGFDTATHALIVRDMVRWDEESAGRTHGLHQKLIIVSVVWAMHAIANLVTKVSTATLVVEVAKSLVGNWGSSSGKRPPSWRQRGGGMFGGLDGGRAEFTCTASCSHGHKSCEVCHLLTRDKPAALPPPP 420          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6P6_9STRA)

HSP 1 Score: 271 bits (694), Expect = 2.330e-81
Identity = 145/274 (52.92%), Postives = 187/274 (68.25%), Query Frame = 2
Query:  557 WGW-ARDGRQFGPAWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQA-------FDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQRG--GGMFGALDGGRAEFTCT-----AHKSCEVCHLLTRDKP 1333
            W W A+DG       L     VHEVW++LQH N+LLNPLCQRLDR YG++LL++R YWVIAGVL AYW RE+LSML A PY +PLT  M+A+S +YH+GKI+L+S+DAQR WSPTLGIMRLL+DHWH+ S  D ++  KR +LQA       FD+ TH LIVRD+V      +  +  L R ++I S++WA+HA+AN+VT +STATL+V +AK+++  + S    T  + +  G  GG   ALDGGR E TC       H  C VCHLLTRD P
Sbjct:   28 WRWHAQDGTL---QRLVALLLVHEVWVMLQHLNVLLNPLCQRLDRGYGISLLKKRQYWVIAGVLGAYWLREILSMLAALPYTAPLTSNMIAVSCVYHLGKIILVSIDAQRGWSPTLGIMRLLIDHWHLRSLADLMISAKRFALQARQLSHCAFDSLTHVLIVRDLVSGRMTRSVASAELERLVVITSLVWALHALANVVTGLSTATLMVRLAKAILEVFASHPKATSTASQHNGHSGGSALALDGGRGELTCGPQCRHGHGKCVVCHLLTRDMP 298          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KNY6_GUITH)

HSP 1 Score: 206 bits (525), Expect = 1.760e-55
Identity = 110/221 (49.77%), Postives = 150/221 (67.87%), Query Frame = 2
Query:  566 ARDGRQFGPAWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSS-GGKTPPSWR 1225
            AR G++    W+    F HEVW+ +QHAN+LLNP  QRLDR YG+ALLR+R YWVIAGVL+AYW+REVLSM++   Y S  T  M+ +S +YH+ KI L+SLDA R++SP LGIM LL+D WH+ S  DAL+ +KR+ LQ FDTATH  IV DM+  D++       L    + ++ +W +HA+A  VT+ STATL VE  K+++  +G +   K  P W+
Sbjct:   95 ARAGQKNTFTWIL---FAHEVWIFMQHANVLLNPYLQRLDRKYGIALLRKRFYWVIAGVLSAYWAREVLSMMLCYSYVSDATKTMIMMSCIYHIAKICLVSLDAARKFSPRLGIMSLLIDQWHLDSLVDALITLKRVLLQGFDTATHCKIVLDMISKDKE-------LLSFAVFIAAVWFVHALACQVTKKSTATLFVETFKAVI--YGQTHDDKFAPKWK 303          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: CER3 (protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V2L4_9DINO)

HSP 1 Score: 191 bits (485), Expect = 4.760e-47
Identity = 108/239 (45.19%), Postives = 140/239 (58.58%), Query Frame = 2
Query:  614 FVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDED--SAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQRGGGMFGALDGGRAEFTCTAHKSCEVCHLLTR 1324
            F+HE W++LQHAN+LLNP CQRLDR YGV++LR+  +WVIAGVL  YWSREV+SML+   + SP T   +  SS YH+ K+  I  DAQR+WSP+LGIMRLL+DHWH  +    L+   R  LQ  DT TH +IVRDM+       +AGR L LH   +    LW +HA  N  T+ STATL VE  ++ +             +RQ         +       C   K C+VC LL +
Sbjct:  331 FLHEAWVMLQHANVLLNPFCQRLDRRYGVSMLRKGQHWVIAGVLVMYWSREVVSMLLCLAFTSPRTQLAILASSGYHLVKMHSICWDAQRQWSPSLGIMRLLIDHWHFDTLAQRLVSALRFFLQGSDTLTHIMIVRDMLTRSGSPITAGRLLPLHGLFL----LWVVHAALNQATQRSTATLFVEAWRAAL-------------YRQ---------EAPATPTACCGSKGCQVCSLLAK 543          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Q1W1_9DINO)

HSP 1 Score: 178 bits (452), Expect = 5.390e-45
Identity = 100/244 (40.98%), Postives = 134/244 (54.92%), Query Frame = 2
Query:  599 LAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQ-RGGGMFGALDGGRAEFTCTAHKSCEVCHLLTRD 1327
            LA    +HE W+ LQH N+LLNP CQRLDR+YG+++L++  +WVIA VL  YW+REV SML+  PY S  +   V +S++YH  K+  I LDA R WSPTLGIM+LL+DHWH  +    L+ + R  LQ +DT  H  IV D++       G    LH    ++ ++W +HA+ N  ++ STATLVVE                  SWR   G     A +            SC VC LL  D
Sbjct:   53 LAALLLLHEAWVTLQHGNVLLNPFCQRLDRNYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIHHGGLGTGYVWWLH----VLFLVWLLHAVLNQTSQQSTATLVVE------------------SWRYILGFHTKKACNDTSCHLAALPGNSCVVCELLKED 274          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812Z067_9DINO)

HSP 1 Score: 173 bits (438), Expect = 2.010e-42
Identity = 86/189 (45.50%), Postives = 122/189 (64.55%), Query Frame = 2
Query:  617 VHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVG 1183
            +HE W+ LQH N+LLNP CQRLDR YG+++L++  +WVIA VL  YW+REV SML+  PY +  +   V +S++YH  K+  I LDA R WSPTLGIM+LL+DHWH  +    L+ + R  LQ +DT  H  IV D++            LH    ++ ++W +HA+ N V++ STATLVVE  + ++G
Sbjct:   61 LHEAWVTLQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYITVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFYTLGTQLVSLLRFLLQGYDTMVHVFIVSDLIHHGGLGTSYVWWLH----VLFLVWLLHAVLNQVSQQSTATLVVESWRYILG 245          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Caroteno-chlorophyll (a-c-binding protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D0R3_SYMMI)

HSP 1 Score: 175 bits (443), Expect = 7.670e-42
Identity = 98/244 (40.16%), Postives = 132/244 (54.10%), Query Frame = 2
Query:  599 LAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQ-RGGGMFGALDGGRAEFTCTAHKSCEVCHLLTRD 1327
            LA    +HE W+ +QH N+LLNP CQRLDR YG+++L++  +WVIA VL  YW+REV SML+  PY S  +   V +S++YH  K+  I LDA R WSPTLGIM+LL+DHWH  +    L+ + R  LQ +DT  H  IV D++       G    LH    ++ ++W +HA+ N  ++ STA LVVE                  SWR   G     A +            SC VC LL  D
Sbjct:   53 LAALLLLHEAWVTMQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIHHGGLGTGYVWWLH----VLFLVWLLHAVLNQTSQQSTAKLVVE------------------SWRYILGFHTKKACNDTSCHLAALPGNSCVVCELLKED 274          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TV35_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.160e-34
Identity = 80/198 (40.40%), Postives = 120/198 (60.61%), Query Frame = 2
Query:  593 AWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGK 1186
            +WLA     HE W+ LQH+N+L NPLCQ LDR YG+ALLR   +W IAG L+AYW RE + M + +P+    T  +V  S +YH  K   + LDA RR+SP  GIMR+++D +H+ +  +A+L   R+ LQ  DT  HA+I++ +  +   ++   + +   +  +S +W  HA  N   R STAT++V++  SL  K
Sbjct:   61 SWLATLLLAHEYWVYLQHSNVLANPLCQHLDRQYGIALLRSNQHWAIAGTLSAYWCRESMCMFLCTPFLPRHTQYLVLYSLVYHTIKSRGVRLDAIRRYSPQFGIMRIVIDKFHLHTTAEAILTAVRLLLQGGDTFIHAMIIKGLFVYLSSTS--EMSMLPMIHWLSFIWITHAAMNQYLRCSTATIMVQLWYSLTSK 256          
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ98_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.160e-33
Identity = 85/207 (41.06%), Postives = 121/207 (58.45%), Query Frame = 2
Query:  596 WLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPY-------ASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVS------VLWAMHAIANLVTRVSTATLVVEVAKSL 1177
            WL +  F HE W+ LQH N+L NPLCQRLDR YG+ALL+   +W IAG L+AYW RE LSM +  P+       A   T  +V IS +YH  K   +  DA +R SPT GIMR+++D +++ + ++ +L   R+ LQ FDT  H LI+RD++  D  S   +  +    II +       +W +HA  N   R STA+++V+   SL
Sbjct:   15 WLFLLLFCHEYWVYLQHCNVLANPLCQRLDRQYGIALLKSNQHWAIAGTLSAYWCRESLSMFLCLPFLQRSNPGAISTTQYLVLISLIYHTIKSRGVRRDALQRQSPTYGIMRVVIDKFYLHTRQEVVLTAVRLFLQGFDTWIHFLILRDLLL-DSSSVSASASVSTPPIITTWLHAIFAIWVLHAAMNQYFRCSTASVMVQAWYSL 220          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
Uncharacterized4.500e-22682.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.160e-20978.47protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized2.330e-8152.92protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.760e-5549.77protein n=1 Tax=Guillardia theta TaxID=55529 RepID... [more]
CER34.760e-4745.19protein n=1 Tax=Symbiodinium natans TaxID=878477 R... [more]
Hypothetical5.390e-4540.98protein n=1 Tax=Symbiodinium necroappetens TaxID=1... [more]
Hypothetical2.010e-4245.50protein n=2 Tax=unclassified Symbiodinium TaxID=27... [more]
Caroteno-chlorophyll7.670e-4240.16a-c-binding protein n=1 Tax=Symbiodinium microadri... [more]
Hypothetical2.160e-3440.40protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical3.160e-3341.06protein n=1 Tax=Amphora coffeiformis TaxID=265554 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig770contigE_fasciculatus_S2_contig770:14243..19065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score636.3
Seed ortholog evalue9.5e-180
Seed eggNOG ortholog2880.D8LAY7
Model size2275
KEGG rclassRC02233
KEGG koko:K00485,ko:K14003
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,ko04141,map00982,map01120,map04141
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005950.1
EC1.14.13.8
Cds size1221
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig770.15873.1prot_E_fasciculatus_S2_contig770.15873.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig770 14403..18171 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842433.0544813-UTR-E_fasciculatus_S2_contig770:14242..144021696842433.0544813-UTR-E_fasciculatus_S2_contig770:14242..14402Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig770 14243..14402 +
1696842433.1374636-UTR-E_fasciculatus_S2_contig770:18171..190651696842433.1374636-UTR-E_fasciculatus_S2_contig770:18171..19065Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig770 18172..19065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842433.0666842-CDS-E_fasciculatus_S2_contig770:14402..145761696842433.0666842-CDS-E_fasciculatus_S2_contig770:14402..14576Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 14403..14576 +
1696842433.0762296-CDS-E_fasciculatus_S2_contig770:15524..158961696842433.0762296-CDS-E_fasciculatus_S2_contig770:15524..15896Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 15525..15896 +
1696842433.085396-CDS-E_fasciculatus_S2_contig770:16240..165191696842433.085396-CDS-E_fasciculatus_S2_contig770:16240..16519Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 16241..16519 +
1696842433.0962846-CDS-E_fasciculatus_S2_contig770:16932..170731696842433.0962846-CDS-E_fasciculatus_S2_contig770:16932..17073Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 16933..17073 +
1696842433.1074185-CDS-E_fasciculatus_S2_contig770:17416..175181696842433.1074185-CDS-E_fasciculatus_S2_contig770:17416..17518Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 17417..17518 +
1696842433.1219354-CDS-E_fasciculatus_S2_contig770:18018..181711696842433.1219354-CDS-E_fasciculatus_S2_contig770:18018..18171Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig770 18019..18171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig770.15873.1

>prot_E_fasciculatus_S2_contig770.15873.1 ID=prot_E_fasciculatus_S2_contig770.15873.1|Name=mRNA_E_fasciculatus_S2_contig770.15873.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=407bp
MWRLRCDVKVAILVVCCLARATAAAEEATRSSEASQVDALAGLNDKLDRL
TSKLESLTHQVEGFVDAGREEGPAGPSAAQVDDQRGGTVRHTAADTRAGL
ESDFDDSSIDGEGEKQQEDRNGEEGGSSGGGTWGWARDGRQFGPAWLAVA
TFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWS
REVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIM
RLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRT
LGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKT
PPSWRQRGGGMFGALDGGRAEFTCTAHKSCEVCHLLTRDKPAAMAPPPHP
TRKRVD*
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mRNA from alignment at E_fasciculatus_S2_contig770:14243..19065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig770.15873.1 ID=mRNA_E_fasciculatus_S2_contig770.15873.1|Name=mRNA_E_fasciculatus_S2_contig770.15873.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4823bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig770:14243..19065+ (Ectocarpus fasciculatus EfasUO2)
CGCAGACAAACGCGCAAACACAGAGAGGCAGCGAAAGAAGAAACCGGCCG TCGCTGTACACACGTAGCAGTGGAATGCCGCATTGACGAAGGTCAAGGTT CCAGCACTTTCGTAATCGGGCCGCCATCCCTCGTGAAAGAGTCAGCGTCT GACGCTGTTCATGTGGCGCCTACGTTGTGATGTCAAGGTGGCGATCCTTG TAGTGTGCTGCCTGGCGAGAGCGACAGCAGCTGCAGAAGAAGCGACCAGA AGCAGCGAAGCCTCCCAGGTGGATGCCCTCGCTGGTCTCAACGATAAACT CGACAGGTTAACCAGCAAGCTTGAGTCTCTCACGGTGAGTGAGTGCTCCT CGCGCGAAAACATGCGTGTTGGACACAGCAGTCAGCAGCAGCGATGTCCG CCGGCGACGCCCGCGTGTCATTCCTCAGAGTTCGATCCGCTGTTGGCGTG GCGTAGAGTGTGTGCTTTTCGCTGCTGCCATGCCTGGTCAGCGCTACGCA ATTTTGTGAGATCCATGGTCTCGAAACAACTCAATCATGCTTGCTGCTGT GTGTCGGCGGTGTACGAGCTCTGAGAAGCGGGGCAACTCGGCCCTCTGTA TGTCACCTGCTGTGAACGTGCGTGGCACCTGCCGCTGTTGACAAGGTTTG CCACTGATTAATTCCTGAACTCGGACGCGAGGTGCTCACGTCGAAGGTAA CGTATGTCCTAAGCAGTACCAGGTATTGTACAACACATTTTCGTTTTGCG CATGTATGCAGATAGATGCACTATGCAATATTTTCTACTGTACTCGTACT TGTATGCAACCAATCCAAGCGTATCATACCTAGCTACAGCCTGCTGTGTT GTTTTAAGCTACGCGTGCTTGTATAGGAAGTAAAGCTACGGCCCCTTTTG CATTGATTGCGCCTGCCTCTGTAGCCGAAGATTAAGATTCCTTCTGTTGA AGCCGTTGGCAAGTGGTACGGATCACCTTCCGCTTGCGCAGAAAAAATAT ATATGTATAGAAAAAGAAAGGTCTAGCCGCCTCCCCATTGTTTGCTCCCG AGACTGTCGGGGTTAGGACCTTTTGTGGCCGCTGGTGCCCCACGGCTTCC TGCGAAATCACCAGGAGTTCTATCAGGAATAGCTGAGCAGAGATAGCTCG TGATGGACAAGTCGAACAGTATTTTGTGCGAACTCCACGATCGCACTTTC TTCTCCATGTTCACGTGCACATCCCCCTGCACGGTCGCGGACGCCGCCAT GCCCTCATGATGATGAACCTCGGCCTTCCCAGCACCAAGTGGAAGGCTTC GTGGATGCCGGTCGAGAAGAAGGGCCCGCGGGGCCCTCGGCTGCTCAGGT AGATGACCAGCGAGGGGGCACCGTTCGCCACACTGCCGCGGATACCAGGG CCGGGTTGGAGTCGGATTTCGACGACAGCAGTATCGACGGGGAGGGAGAA AAACAGCAGGAGGACAGGAACGGGGAGGAGGGTGGCAGCAGCGGTGGCGG CACCTGGGGCTGGGCGCGAGATGGGCGCCAGTTTGGGCCGGCCTGGTTGG CGGTGGCAACGTTTGTGCACGAGGTGTGGCTGTTGCTGCAGCACGCCAAC ATCTTGCTGAACCCCCTGTGCCAAAGGCTGGACAGAAGTTATGGCGTCGC GCTGGTAAGAAGTTGAGGTCACGCGGCTTGGGTCTCGAAAGTTAGTCTCG TGTGCGGAAGGACAAAGTCACAGCCTGGCCTGTATTGCTTAAGTTGTGCC AATCTCAGTGCTGTGAAGCCCGCTGCTATCCCGTCATCCTTAGCTCGGAC TGCCTCCTGTATTGTCCTTGTGCGTCTGTTTGGCCTTCGATCGAGGCAAG CAAATCTGTGGTCGACATATCGTCACATGATTCCATCTGTGAAACGGACA GCCCCCTGGACCTAAAACCACTTCCTGCGTGCTTGGCCTGCTCACACGCG TGCGTCTCATGCCTGCGTCGCCGTCTCACGGCGTGCTTGCTGCTGCAGCT GAGGCGAAGATTGTACTGGGTTATCGCCGGCGTACTGGCCGCCTACTGGT CGAGGGAGGTGCTGTCCATGCTGATCGCATCTCCCTACGCCTCTCCTCTC ACGCTGAAGATGGTGGCGATAAGCTCCTTGTACCACGTGGGAAAGATTTT GCTCATCTCACTGGACGCGCAGCGACGGTGGTCGCCGACGTTGGGGATCA TGCGGTTGCTCATGGACCACTGGCACATGTCCTCCTTCAAGGACGCGTTG CTCTGTGTCAAGAGAATGTCGCTCCAGGTAGGGAACAGGCGCGAGTACCA ACGCATTCCTCCGGCCCCTGTGCCGACAAACACGACATAACCTTCGAGAT TCGGATGCCTGCTTTAGTAAGCCGTGTTCCCCAGACTGATGCGGAAAATC GGTGAATCGAAGAACACGTTAGCGTCACCTCGGCGGTCAACTCTATCCAG TTGCGATGTTCCAGGTGCCGATTGCGGTAGAGCGACACCCAGAGCTCAGC CTCTCCCGGTTCATGTTACAGCGGTCGAGATTCCATCACAACACCAGTCG ACACCGTGTGTGGCCCTTTCGATGCACACCACATGAATACCGTATGTCGC TAGGTATCGGCTGCCGTAGATGGGCCGAAGTTTACTGGACGCTCGTCGGC CCTCTGTTCCTCACCGTCGGGGGGTTTCTTCTCCTTGCAGGCGTTTGACA CGGCAACGCATGCCCTCATCGTCCGGGACATGGTCCGCTGGGACGAGGAT TCGGCGGGAAGAACGCTTGGGCTTCACCGAAAACTGATCATTGTTTCTGT CTTGTGGGCGATGCACGCCATCGCGAACCTGGTGAGCGAACAACCAACTA CGTAGATGAAGAAATATGCGCGAATGGTTCAACAAACTGGAGCCCGTGCG CACCAAACATTTGGTCAAGCGCGCTGCACCGGTACCAACATTTTACCTTT TGTGTCTGCCGAGGGTTCCTTCCTGTTACAGTACTCTATTCGGATTTGTC CCAGTTTACATGACCGCTTCTTCGGCAGTTCATCAAAGGAGCAACATACC GCCACGGCCCTACTGCTAGAATGCAAGCCCTTCTTCCTTGGGGCCGCAGG CCACGATTCATGTGTGCAGCGTTTGGGCTTACTTTGCTGGTCACTAATCC TGCCCCCCCCCGTGTCTGTGTCAGGTGACCAGGGTCTCCACGGCAACGTT GGTCGTGGAAGTTGCCAAGAGTCTTGTCGGCAAGTGGGGGAGTTCCGGCG GGAAAACGCCCCCGAGTTGGAGACAGGTGATTGTAGCAGTCAGACCAGGG CGCCGTTTATACGTGACACGAGGCGGGGATGTTGACCCACGGACTGGGCA TTCATGGGCACATAGCGAGGAGGTATTGAGGTGTCTGTGCGGACGACGTG CGTTGATCGACAGGGGAATGCCACAGATCTTGCTGCGGTGTCTTCCGTCT CCACGTGGTGTGTCGGACTGTTGCTGGAAGCCTCGTGGCCTGGCCTCTGT TGGCCTTGACCGTGTACTTCGGTTTTGAACCGGCTATCGTATATGTGAAA TTGTGTAATCCTTGGAAAATGTTTATATGCTGCGACATTTGCGTGCCAGC TCGTAAGTGGTGATCATTGAGTCTTGGAGGGGGAAGACCCTGGTTCAAGA ATCTAACCCAAGGTGACGCAGGGTGCAGCCATCGCCCGTAGGTTGCTTTC TGCGGCATGGCTCGGCATGAATCATCGTAAAAGCTGCAAGCTCTAACGCC TCTCCCGCTTTCGGGCTGTCGCACAGAGAGGAGGCGGCATGTTTGGCGCG TTAGACGGCGGGCGCGCGGAGTTCACTTGCACGGCGCACAAGAGTTGCGA AGTTTGCCACCTGCTCACGAGGGACAAGCCTGCCGCAATGGCTCCCCCCC CCCATCCCACACGGAAACGCGTCGACTAAGCGGCAGCAACAAGAAAAAGA GGGAGGGCGCTTATAATGCAAAGAGGTTTCAACAAAGCACAGTGCAAAGG TTGGCGCTGGTTTAATGTGCACACCACCTTACTGCGGTGCAAGTGTTAGC CCGCTGGTGTGGAAGATCATGTATCGCTGCTTAGTCTTTCAAGTATGATT TCGTGGCATTTGCAATGAAAGAGCTTGAAGCAGCTCGTGTATCGGCGTAA ACGGAGTCAGAGATACGGCGGCGCTTCTCTCCCGTTCCGAGTCCGGGTCC GTGTGCCCGCAATACAAGGTGGCGTGAAAAGGCCGAGATTCGGAGTATTC TAGATTAGTCTATGTTTTTGATCTTTTGTCGTGATATTTTGGCACACAGC TCCAGTCAGCGCGAAGCAAGTGAAAAGTCACTTTTGGAGTCATAACTGTG TTCTTCGGCGCAGGGCGCGTGTGGTAGGGTGTGGTATCTATACGTTGTGG GAGCAATATTACTACACCATCTGTCGGTGTGAAACCACCGTCCATTCCCC GCTCGTGTTACAGACAGCAAGGTTTTCGTGATACGCACGACCACGAGGTA GTGCTACGGTATTATCAACTGCCAATACGGCCGACATTGACTTACTTCAA GCTTGCGAGTAGTGGAATTGGAGGCCTTTTTTTGTGTCTGTCTTGGCAAA GGGGGCACCGGCTTAGAGACCTAGATTGTGGCCCCGCCTCGCACTTTTCC ATATTTTAAAACGATACATTAATTGCTGGCCGAACATGTTCGGTTTTAAT GCACCGAGTACACGCGGTGTCGTCCTCGCGCGGCTTCCTTGAGTACTCGT TTCCAAAAAAGCCGACGTTAGCCCGGGTTTTGGCAATGCGCTATAGGACC CTGAAGTCAGGCGTGTCCATATA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig770:14243..19065+

>mRNA_E_fasciculatus_S2_contig770.15873.1 ID=mRNA_E_fasciculatus_S2_contig770.15873.1|Name=mRNA_E_fasciculatus_S2_contig770.15873.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1221bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig770:14243..19065+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGCGCCTACGTTGTGATGTCAAGGTGGCGATCCTTGTAGTGTGCTG
CCTGGCGAGAGCGACAGCAGCTGCAGAAGAAGCGACCAGAAGCAGCGAAG
CCTCCCAGGTGGATGCCCTCGCTGGTCTCAACGATAAACTCGACAGGTTA
ACCAGCAAGCTTGAGTCTCTCACGCACCAAGTGGAAGGCTTCGTGGATGC
CGGTCGAGAAGAAGGGCCCGCGGGGCCCTCGGCTGCTCAGGTAGATGACC
AGCGAGGGGGCACCGTTCGCCACACTGCCGCGGATACCAGGGCCGGGTTG
GAGTCGGATTTCGACGACAGCAGTATCGACGGGGAGGGAGAAAAACAGCA
GGAGGACAGGAACGGGGAGGAGGGTGGCAGCAGCGGTGGCGGCACCTGGG
GCTGGGCGCGAGATGGGCGCCAGTTTGGGCCGGCCTGGTTGGCGGTGGCA
ACGTTTGTGCACGAGGTGTGGCTGTTGCTGCAGCACGCCAACATCTTGCT
GAACCCCCTGTGCCAAAGGCTGGACAGAAGTTATGGCGTCGCGCTGCTGA
GGCGAAGATTGTACTGGGTTATCGCCGGCGTACTGGCCGCCTACTGGTCG
AGGGAGGTGCTGTCCATGCTGATCGCATCTCCCTACGCCTCTCCTCTCAC
GCTGAAGATGGTGGCGATAAGCTCCTTGTACCACGTGGGAAAGATTTTGC
TCATCTCACTGGACGCGCAGCGACGGTGGTCGCCGACGTTGGGGATCATG
CGGTTGCTCATGGACCACTGGCACATGTCCTCCTTCAAGGACGCGTTGCT
CTGTGTCAAGAGAATGTCGCTCCAGGCGTTTGACACGGCAACGCATGCCC
TCATCGTCCGGGACATGGTCCGCTGGGACGAGGATTCGGCGGGAAGAACG
CTTGGGCTTCACCGAAAACTGATCATTGTTTCTGTCTTGTGGGCGATGCA
CGCCATCGCGAACCTGGTGACCAGGGTCTCCACGGCAACGTTGGTCGTGG
AAGTTGCCAAGAGTCTTGTCGGCAAGTGGGGGAGTTCCGGCGGGAAAACG
CCCCCGAGTTGGAGACAGAGAGGAGGCGGCATGTTTGGCGCGTTAGACGG
CGGGCGCGCGGAGTTCACTTGCACGGCGCACAAGAGTTGCGAAGTTTGCC
ACCTGCTCACGAGGGACAAGCCTGCCGCAATGGCTCCCCCCCCCCATCCC
ACACGGAAACGCGTCGACTAA
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