mRNA_E_fasciculatus_S2_contig770.15873.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY7_ECTSI) HSP 1 Score: 647 bits (1670), Expect = 4.500e-226 Identity = 352/426 (82.63%), Postives = 369/426 (86.62%), Query Frame = 2
Query: 149 LTLFMWRLRCDVKVAILVVCCLARATAAAEEATRSSEASQVDALAGLNXXXXXXXXXXXXXXXXVEGFVDAGREE--GPAGPSAA---------QVDDQRGGTVRHTAADTRAGLESDFDDSSIDGEGEKQQEDRNGEEGGSSGGGTWGWARDGRQFGPAWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQRGGGMFGALDGGRAEFTCTA-----HKSCEVCHLLTRDKPAAMAPPPHPTRKRVD 1378
LTLFMWR RC VKVAILVVCCLARATAAAE A SSE+SQ DALAGLN XXXXXXXX VE FVDAGR+E GPAGP AA Q+DDQRGGTV ++A ESD DSS++GEGEK+QEDRNGEE GSS GGTWGW RDGR+FGPAWL VATF HEVWLLLQHANILLNPLCQRLDRSYG+ LLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKI+LISLDAQRRWSPT+GIMRLLMDHWHMSSFKD LLC+KRMSLQ FDTATHALIVRDMVRWDE+SA RT GLHRKLI+VSV+WAMHAIANLVTRVSTATLVVEVAKSLVG WGS GK PPSWRQRGGGMFGALDGGRAEFTCT HKSCEVCHLLTRDKPAA+APPPHPTRKRVD
Sbjct: 9 LTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLXXXXXXXXHQVEDFVDAGRQERGGPAGPPAARVEVGRGVGQIDDQRGGTV------SQADAESDLYDSSVEGEGEKKQEDRNGEEDGSSDGGTWGWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 428
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB7_9PHAE) HSP 1 Score: 605 bits (1559), Expect = 4.160e-209 Identity = 328/418 (78.47%), Postives = 343/418 (82.06%), Query Frame = 2
Query: 149 LTLFMWRLRCDVKVAILVVCCLARATAAAEEATRSSEASQVDALAGLNXXXXXXXXXXXXXXXXVEGFVDAGREEG--PAGPSAA---------QVDDQRGGTVRHTAADTRAGLESDFDDSSIDGEGEKQQEDRNGEEGGSSGGGTWGWARDGRQFGPAWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQRGGGMFGALDGGRAEFTCTA-----HKSCEVCHLLTRDKPAAMAPPP 1354
LTLFMWRLRCDVKVAILVVC LARATAAAEEA SSE SQ ALAGLN VE FVDAGR+EG PAGPSAA Q+DDQR G VR AA ESD D SSI+GE E++Q GG+WGWARDGR+FGPAWL VATFVHEVWLLLQHANILLNPLCQRLDRSYGV LLRRRLYWVIAGVL+AYWSREVLSMLIASPYASPLTLKMVA SSLYHVGKI+LIS DAQRRWSPT+GIMRLLMDHWHMSSFKDALLCVKRMSLQ FDTATHALIVRDMVRWDE+SAGRT GLH+KLIIVSV+WAMHAIANLVT+VSTATLVVEVAKSLVG WGSS GK PPSWRQRGGGMFG LDGGRAEFTCTA HKSCEVCHLLTRDKPAA+ PPP
Sbjct: 9 LTLFMWRLRCDVKVAILVVCSLARATAAAEEAITSSEVSQAGALAGLNDKLDRLTSKLESLTHQVEDFVDAGRQEGGGPAGPSAARVEAGRGVGQIDDQRRGIVRPAAA------ESDLDGSSIEGEAEEKQXXXXXXXXXXXDGGSWGWARDGRRFGPAWLVVATFVHEVWLLLQHANILLNPLCQRLDRSYGVGLLRRRLYWVIAGVLSAYWSREVLSMLIASPYASPLTLKMVATSSLYHVGKIILISRDAQRRWSPTMGIMRLLMDHWHMSSFKDALLCVKRMSLQGFDTATHALIVRDMVRWDEESAGRTHGLHQKLIIVSVVWAMHAIANLVTKVSTATLVVEVAKSLVGNWGSSSGKRPPSWRQRGGGMFGGLDGGRAEFTCTASCSHGHKSCEVCHLLTRDKPAALPPPP 420
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6P6_9STRA) HSP 1 Score: 271 bits (694), Expect = 2.330e-81 Identity = 145/274 (52.92%), Postives = 187/274 (68.25%), Query Frame = 2
Query: 557 WGW-ARDGRQFGPAWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQA-------FDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQRG--GGMFGALDGGRAEFTCT-----AHKSCEVCHLLTRDKP 1333
W W A+DG L VHEVW++LQH N+LLNPLCQRLDR YG++LL++R YWVIAGVL AYW RE+LSML A PY +PLT M+A+S +YH+GKI+L+S+DAQR WSPTLGIMRLL+DHWH+ S D ++ KR +LQA FD+ TH LIVRD+V + + L R ++I S++WA+HA+AN+VT +STATL+V +AK+++ + S T + + G GG ALDGGR E TC H C VCHLLTRD P
Sbjct: 28 WRWHAQDGTL---QRLVALLLVHEVWVMLQHLNVLLNPLCQRLDRGYGISLLKKRQYWVIAGVLGAYWLREILSMLAALPYTAPLTSNMIAVSCVYHLGKIILVSIDAQRGWSPTLGIMRLLIDHWHLRSLADLMISAKRFALQARQLSHCAFDSLTHVLIVRDLVSGRMTRSVASAELERLVVITSLVWALHALANVVTGLSTATLMVRLAKAILEVFASHPKATSTASQHNGHSGGSALALDGGRGELTCGPQCRHGHGKCVVCHLLTRDMP 298
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KNY6_GUITH) HSP 1 Score: 206 bits (525), Expect = 1.760e-55 Identity = 110/221 (49.77%), Postives = 150/221 (67.87%), Query Frame = 2
Query: 566 ARDGRQFGPAWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSS-GGKTPPSWR 1225
AR G++ W+ F HEVW+ +QHAN+LLNP QRLDR YG+ALLR+R YWVIAGVL+AYW+REVLSM++ Y S T M+ +S +YH+ KI L+SLDA R++SP LGIM LL+D WH+ S DAL+ +KR+ LQ FDTATH IV DM+ D++ L + ++ +W +HA+A VT+ STATL VE K+++ +G + K P W+
Sbjct: 95 ARAGQKNTFTWIL---FAHEVWIFMQHANVLLNPYLQRLDRKYGIALLRKRFYWVIAGVLSAYWAREVLSMMLCYSYVSDATKTMIMMSCIYHIAKICLVSLDAARKFSPRLGIMSLLIDQWHLDSLVDALITLKRVLLQGFDTATHCKIVLDMISKDKE-------LLSFAVFIAAVWFVHALACQVTKKSTATLFVETFKAVI--YGQTHDDKFAPKWK 303
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: CER3 (protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V2L4_9DINO) HSP 1 Score: 191 bits (485), Expect = 4.760e-47 Identity = 108/239 (45.19%), Postives = 140/239 (58.58%), Query Frame = 2
Query: 614 FVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDED--SAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQRGGGMFGALDGGRAEFTCTAHKSCEVCHLLTR 1324
F+HE W++LQHAN+LLNP CQRLDR YGV++LR+ +WVIAGVL YWSREV+SML+ + SP T + SS YH+ K+ I DAQR+WSP+LGIMRLL+DHWH + L+ R LQ DT TH +IVRDM+ +AGR L LH + LW +HA N T+ STATL VE ++ + +RQ + C K C+VC LL +
Sbjct: 331 FLHEAWVMLQHANVLLNPFCQRLDRRYGVSMLRKGQHWVIAGVLVMYWSREVVSMLLCLAFTSPRTQLAILASSGYHLVKMHSICWDAQRQWSPSLGIMRLLIDHWHFDTLAQRLVSALRFFLQGSDTLTHIMIVRDMLTRSGSPITAGRLLPLHGLFL----LWVVHAALNQATQRSTATLFVEAWRAAL-------------YRQ---------EAPATPTACCGSKGCQVCSLLAK 543
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Q1W1_9DINO) HSP 1 Score: 178 bits (452), Expect = 5.390e-45 Identity = 100/244 (40.98%), Postives = 134/244 (54.92%), Query Frame = 2
Query: 599 LAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQ-RGGGMFGALDGGRAEFTCTAHKSCEVCHLLTRD 1327
LA +HE W+ LQH N+LLNP CQRLDR+YG+++L++ +WVIA VL YW+REV SML+ PY S + V +S++YH K+ I LDA R WSPTLGIM+LL+DHWH + L+ + R LQ +DT H IV D++ G LH ++ ++W +HA+ N ++ STATLVVE SWR G A + SC VC LL D
Sbjct: 53 LAALLLLHEAWVTLQHGNVLLNPFCQRLDRNYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIHHGGLGTGYVWWLH----VLFLVWLLHAVLNQTSQQSTATLVVE------------------SWRYILGFHTKKACNDTSCHLAALPGNSCVVCELLKED 274
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812Z067_9DINO) HSP 1 Score: 173 bits (438), Expect = 2.010e-42 Identity = 86/189 (45.50%), Postives = 122/189 (64.55%), Query Frame = 2
Query: 617 VHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVG 1183
+HE W+ LQH N+LLNP CQRLDR YG+++L++ +WVIA VL YW+REV SML+ PY + + V +S++YH K+ I LDA R WSPTLGIM+LL+DHWH + L+ + R LQ +DT H IV D++ LH ++ ++W +HA+ N V++ STATLVVE + ++G
Sbjct: 61 LHEAWVTLQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYITVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFYTLGTQLVSLLRFLLQGYDTMVHVFIVSDLIHHGGLGTSYVWWLH----VLFLVWLLHAVLNQVSQQSTATLVVESWRYILG 245
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Caroteno-chlorophyll (a-c-binding protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D0R3_SYMMI) HSP 1 Score: 175 bits (443), Expect = 7.670e-42 Identity = 98/244 (40.16%), Postives = 132/244 (54.10%), Query Frame = 2
Query: 599 LAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGKWGSSGGKTPPSWRQ-RGGGMFGALDGGRAEFTCTAHKSCEVCHLLTRD 1327
LA +HE W+ +QH N+LLNP CQRLDR YG+++L++ +WVIA VL YW+REV SML+ PY S + V +S++YH K+ I LDA R WSPTLGIM+LL+DHWH + L+ + R LQ +DT H IV D++ G LH ++ ++W +HA+ N ++ STA LVVE SWR G A + SC VC LL D
Sbjct: 53 LAALLLLHEAWVTMQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIHHGGLGTGYVWWLH----VLFLVWLLHAVLNQTSQQSTAKLVVE------------------SWRYILGFHTKKACNDTSCHLAALPGNSCVVCELLKED 274
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TV35_9STRA) HSP 1 Score: 152 bits (385), Expect = 2.160e-34 Identity = 80/198 (40.40%), Postives = 120/198 (60.61%), Query Frame = 2
Query: 593 AWLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVSVLWAMHAIANLVTRVSTATLVVEVAKSLVGK 1186
+WLA HE W+ LQH+N+L NPLCQ LDR YG+ALLR +W IAG L+AYW RE + M + +P+ T +V S +YH K + LDA RR+SP GIMR+++D +H+ + +A+L R+ LQ DT HA+I++ + + ++ + + + +S +W HA N R STAT++V++ SL K
Sbjct: 61 SWLATLLLAHEYWVYLQHSNVLANPLCQHLDRQYGIALLRSNQHWAIAGTLSAYWCRESMCMFLCTPFLPRHTQYLVLYSLVYHTIKSRGVRLDAIRRYSPQFGIMRIVIDKFHLHTTAEAILTAVRLLLQGGDTFIHAMIIKGLFVYLSSTS--EMSMLPMIHWLSFIWITHAAMNQYLRCSTATIMVQLWYSLTSK 256
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ98_9STRA) HSP 1 Score: 148 bits (373), Expect = 3.160e-33 Identity = 85/207 (41.06%), Postives = 121/207 (58.45%), Query Frame = 2
Query: 596 WLAVATFVHEVWLLLQHANILLNPLCQRLDRSYGVALLRRRLYWVIAGVLAAYWSREVLSMLIASPY-------ASPLTLKMVAISSLYHVGKILLISLDAQRRWSPTLGIMRLLMDHWHMSSFKDALLCVKRMSLQAFDTATHALIVRDMVRWDEDSAGRTLGLHRKLIIVS------VLWAMHAIANLVTRVSTATLVVEVAKSL 1177
WL + F HE W+ LQH N+L NPLCQRLDR YG+ALL+ +W IAG L+AYW RE LSM + P+ A T +V IS +YH K + DA +R SPT GIMR+++D +++ + ++ +L R+ LQ FDT H LI+RD++ D S + + II + +W +HA N R STA+++V+ SL
Sbjct: 15 WLFLLLFCHEYWVYLQHCNVLANPLCQRLDRQYGIALLKSNQHWAIAGTLSAYWCRESLSMFLCLPFLQRSNPGAISTTQYLVLISLIYHTIKSRGVRRDALQRQSPTYGIMRVVIDKFYLHTRQEVVLTAVRLFLQGFDTWIHFLILRDLLL-DSSSVSASASVSTPPIITTWLHAIFAIWVLHAAMNQYFRCSTASVMVQAWYSL 220 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig770.15873.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig770.15873.1 >prot_E_fasciculatus_S2_contig770.15873.1 ID=prot_E_fasciculatus_S2_contig770.15873.1|Name=mRNA_E_fasciculatus_S2_contig770.15873.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=407bp MWRLRCDVKVAILVVCCLARATAAAEEATRSSEASQVDALAGLNDKLDRLback to top mRNA from alignment at E_fasciculatus_S2_contig770:14243..19065+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig770.15873.1 ID=mRNA_E_fasciculatus_S2_contig770.15873.1|Name=mRNA_E_fasciculatus_S2_contig770.15873.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4823bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig770:14243..19065+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig770:14243..19065+ >mRNA_E_fasciculatus_S2_contig770.15873.1 ID=mRNA_E_fasciculatus_S2_contig770.15873.1|Name=mRNA_E_fasciculatus_S2_contig770.15873.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1221bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig770:14243..19065+ (Ectocarpus fasciculatus EfasUO2)back to top |