mRNA_E_fasciculatus_S2_contig769.15858.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig769.15858.1
Unique NamemRNA_E_fasciculatus_S2_contig769.15858.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig769.15858.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 5.840e-34
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 2 
Query:    2 PF-PLACSGNVPGEDMVQVGEALGWLNVFNPFRPDGTYRLNLNRPGEERVAATRMEFVRVPMDVGKAALMQAFTSGAFGAHTQ 247
            PF P  C G +P EDMV+VG+ALGWLNVFNPFRPDGT+RLNLNRP E+RVAA  ME VR+PM +GKAALMQAF SGAFGAHT+
Sbjct: 1071 PFNPRPCRGKLPDEDMVRVGDALGWLNVFNPFRPDGTFRLNLNRPDEKRVAAAVMELVRIPMHIGKAALMQAFPSGAFGAHTE 1153
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BLAST of mRNA_E_fasciculatus_S2_contig769.15858.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM5_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.140e-31
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 2 
Query:   29 VPGEDMVQVGEALGWLNVFNPFRPDGTYRLNLNRPGEERVAATRMEFVRVPMDVGKAALMQAFTSGAFGAHTQ 247
            +P EDMV+VG+ALGWLNVFNPFRPDGTYRLNLNRP E+R+AA  ME VR+PMD+GK ALMQAF SGAFG+HT+
Sbjct: 1144 LPDEDMVRVGDALGWLNVFNPFRPDGTYRLNLNRPDEKRLAAAVMELVRIPMDIGKPALMQAFPSGAFGSHTE 1216
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig769.15858.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.840e-3475.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.140e-3178.08leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig769contigE_fasciculatus_S2_contig769:3042..3941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842431.4207847-CDS-E_fasciculatus_S2_contig769:3041..32851696842431.4207847-CDS-E_fasciculatus_S2_contig769:3041..3285Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig769 3042..3285 +
1696842431.4334662-CDS-E_fasciculatus_S2_contig769:3914..39401696842431.4334662-CDS-E_fasciculatus_S2_contig769:3914..3940Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig769 3915..3940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig769.15858.1prot_E_fasciculatus_S2_contig769.15858.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig769 3042..3940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig769.15858.1

>prot_E_fasciculatus_S2_contig769.15858.1 ID=prot_E_fasciculatus_S2_contig769.15858.1|Name=mRNA_E_fasciculatus_S2_contig769.15858.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=90bp
PIPSCVQWKCPRRGHGSSGRGLGVAECVQPISAGRNIPVEPQPSRRGASG
GHKDGVCPGSDGCWKGGSHAGVYFGGVRSPHPTTWSNRND
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mRNA from alignment at E_fasciculatus_S2_contig769:3042..3941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig769.15858.1 ID=mRNA_E_fasciculatus_S2_contig769.15858.1|Name=mRNA_E_fasciculatus_S2_contig769.15858.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=900bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig769:3042..3941+ (Ectocarpus fasciculatus EfasUO2)
CCCATTCCCTCTTGCGTGCAGTGGAAATGTCCCCGGCGAGGACATGGTTC
AAGTGGGAGAGGCCTTGGGGTGGCTGAATGTGTTCAACCCATTTCGGCCG
GACGGAACATACCGGTTGAACCTCAACCGTCCAGGCGAGGAGCGAGTGGC
GGCCACAAGGATGGAGTTTGTCCGGGTTCCGATGGATGTTGGAAAGGCGG
CTCTCATGCAGGCGTTTACTTCGGGGGCGTTCGGAGCCCACACCGTGAGT
AGTCGTCATTGTCGAGCATGAGGGCGTTCGTTGTTTCGAATGGTGGGGTT
TCTTTGTGTAAGTGAAGCGTTTCTAAGCATGGTTGCCCAAATGGGCGCAT
GCTATGCCCTCATTCTTAGAAGCATGTCTCAAGGGCATTCGAGACTGCTA
AAGTGAGTTTCCGCGACGAGTGTTGAGGGCTTGTGTTATTGGCGCGGTTG
TTTGTTGCTGATTATGTTGATGGTGGTCTTGAGGTGAACGCCATCCTTCA
GCTTTTCCTTGTCTGATTTTCGTTTGAGGGGGGACGCCTTCCTTATCGAA
AGGGGACGCAGAACTTGGATGATGCCGTCTGACATGGCATTATCGCCCCG
AAACTCTTGGGGTCTATAACAAACGAACAGCTACAGGAACGTCAACGCAC
GCTGTGCTTCCAACGGACTCTATCCAAGTAACCCCGCTCGCTCCGCATAT
TCTCGCTAAAATCACGCACGATGGCTGGTTCTTGTGTTTTGTTGAAACCA
TCGTACCGCCCAAGACTTGGAAGATAGCTCTGCCGTCCTCCAGTCAGTGG
TCTAATTGGCCTTAGAGCCACAGATGACTGATCCATCCCCATCAAACGAA
AATATCGGTGGGGGTGTTTGCAGCAACAACGTGGAGCAACCGAAACGACC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig769:3042..3941+

>mRNA_E_fasciculatus_S2_contig769.15858.1 ID=mRNA_E_fasciculatus_S2_contig769.15858.1|Name=mRNA_E_fasciculatus_S2_contig769.15858.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig769:3042..3941+ (Ectocarpus fasciculatus EfasUO2)
CCCATTCCCTCTTGCGTGCAGTGGAAATGTCCCCGGCGAGGACATGGTTC
AAGTGGGAGAGGCCTTGGGGTGGCTGAATGTGTTCAACCCATTTCGGCCG
GACGGAACATACCGGTTGAACCTCAACCGTCCAGGCGAGGAGCGAGTGGC
GGCCACAAGGATGGAGTTTGTCCGGGTTCCGATGGATGTTGGAAAGGCGG
CTCTCATGCAGGCGTTTACTTCGGGGGCGTTCGGAGCCCACACCCAACAA
CGTGGAGCAACCGAAACGAC
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