mRNA_E_fasciculatus_S2_contig7683.15854.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7683.15854.1
Unique NamemRNA_E_fasciculatus_S2_contig7683.15854.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: NMO (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU38_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 7.440e-60
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    7 VQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 312
            VQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATL+SVSSLVHPDLLVEIEADALEP
Sbjct:  455 VQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLVSVSSLVHPDLLVEIEADALEP 556          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: NMO (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB1_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.370e-57
Identity = 98/102 (96.08%), Postives = 102/102 (100.00%), Query Frame = 1
Query:    7 VQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 312
            VQVAGTTATDPDGSGVLCIGDVGGQTQYIFHII+LAL+EAGCSLENVVRTRMYVTDI+NAEKVMAEHC+VFSSIRPAATLISVSSLVHPDLLVEIEADALEP
Sbjct:  559 VQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIISLALKEAGCSLENVVRTRMYVTDIENAEKVMAEHCRVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 660          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: RidA (family protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A534LG02_9EURY)

HSP 1 Score: 107 bits (268), Expect = 5.380e-28
Identity = 58/102 (56.86%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 SFVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADAL 306
            + V VAGTTATDPDG  V+  GD  GQ  +IF  +  AL EAG  LE+V+RTRM+VT+I + EKV   H + F  IRPAATL+ VS L+ P +LVEIEADA+
Sbjct:   26 NHVAVAGTTATDPDGK-VVAPGDAYGQAVHIFRTMEAALAEAGAQLEDVIRTRMFVTNIDDWEKVGRAHAEFFQQIRPAATLLQVSRLIDPQVLVEIEADAI 126          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: RidA (family protein n=2 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534KRH9_9EURY)

HSP 1 Score: 106 bits (265), Expect = 1.530e-27
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    4 FVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADAL 306
            FV VAGTTATD  G G++  GD  GQ  +IF  I  AL EAG  L +VVRTRM++ D+ + EKV   H ++F  IRPAAT++ VS  +HPD+LVEIEADA+
Sbjct:   27 FVVVAGTTATDSRG-GIVARGDAYGQAVHIFRKIEAALEEAGARLPDVVRTRMFLADLDDWEKVGRAHAELFREIRPAATMVRVSGFIHPDILVEIEADAI 126          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: RidA (family protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A534MAT5_9EURY)

HSP 1 Score: 104 bits (259), Expect = 1.360e-26
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 SFVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADAL 306
            ++V VAGTTATDP G  V+  GD  GQ  +IFH I  AL +AG  LE+VVRTR+++T+I++ EKV   H + F  IRPAATL+ VS L+  ++LVEIEADA+
Sbjct:   26 AYVAVAGTTATDPQGK-VVAPGDAYGQAVHIFHRIEAALTQAGARLEDVVRTRIFLTNIEDWEKVGRAHAQFFRDIRPAATLLEVSRLIDAEVLVEIEADAV 126          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: RidA (family protein n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A7Y1XY75_9BACT)

HSP 1 Score: 103 bits (257), Expect = 2.300e-26
Identity = 52/103 (50.49%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 SFVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALE 309
            ++++V+GTTA     + V+CIGD  GQT++IF+II  AL + G +L +VVRTRMYVTDI   E     H + F  +RPAATL+ VS LVHP++L+EIE  A++
Sbjct:   26 NYIEVSGTTAVV--NNEVVCIGDAYGQTKFIFNIIENALNKLGATLSDVVRTRMYVTDISKFEDYTKAHGEFFKDVRPAATLVEVSGLVHPNMLIEIEVTAIK 126          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: Uncharacterized (protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7PFL8_9BACT)

HSP 1 Score: 102 bits (254), Expect = 8.680e-26
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 SFVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 312
            SFV VAGTTAT PDG+ ++ IGD   Q       I  AL +AG SL +VVRTRMYVT+I + E+V   H +VF  IRPA+TL++VS LV P++LVEIEA+A+ P
Sbjct:   33 SFVHVAGTTATGPDGA-IIGIGDAYAQAVQALKNIEHALVQAGASLADVVRTRMYVTNIADWERVGRAHGEVFRDIRPASTLVAVSRLVAPEMLVEIEAEAIVP 135          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: RidA (family protein n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A6L8CBA9_9BACT)

HSP 1 Score: 102 bits (255), Expect = 9.240e-26
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    7 VQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDI-KNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADALEP 312
            + V+GTTA  P+GS V+  GD   QTQYIF +IA AL E G SL +VVRTR+YV DI  +AE V   H ++F SIRPAAT++ V+ L+ P+LLVEIE DA+ P
Sbjct:   37 IFVSGTTAVTPEGS-VVGEGDAYAQTQYIFSVIAEALHELGTSLTDVVRTRIYVVDIDSHAEAVGKAHGEIFESIRPAATMVGVAGLIAPELLVEIEVDAVLP 138          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: RidA (family protein n=1 Tax=Haloglomus irregulare TaxID=2234134 RepID=A0A554NCD9_9EURY)

HSP 1 Score: 101 bits (252), Expect = 1.740e-25
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    7 VQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADAL 306
            V +AGTTATD DG  V   GD   QT++   ++A AL +AG  +E+VVRTR++VTD+ + E +   H + F  +RPAAT++ VS+LVHPDL+VEIEA+A+
Sbjct:   28 VHIAGTTATDADGDPV-APGDAYAQTRHALGLVAEALADAGADIEDVVRTRLFVTDVDDWEAIGRTHGETFGDVRPAATMVEVSALVHPDLVVEIEAEAV 126          
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Match: RidA (family protein n=1 Tax=Antrihabitans stalagmiti TaxID=2799499 RepID=UPI0018F76CD8)

HSP 1 Score: 101 bits (251), Expect = 1.870e-25
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query:    4 FVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVVRTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEADAL 306
            FV VAGTTA  PDGS V    D+G Q +     I  AL E G   ENVVRTRM+VTDI   E+V   H +VF+ IRPAAT++ V +L+ PDLLVEIE DA+
Sbjct:   28 FVWVAGTTAASPDGSAVGG-ADIGAQAREALKRIVAALAEVGAGPENVVRTRMFVTDISRWEEVGRAHGEVFAEIRPAATMVEVKALISPDLLVEIEVDAI 127          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7683.15854.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NMO7.440e-6099.02domain-containing protein n=1 Tax=Ectocarpus silic... [more]
NMO2.370e-5796.08domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RidA5.380e-2856.86family protein n=2 Tax=cellular organisms TaxID=13... [more]
RidA1.530e-2755.45family protein n=2 Tax=Euryarchaeota archaeon TaxI... [more]
RidA1.360e-2654.90family protein n=3 Tax=cellular organisms TaxID=13... [more]
RidA2.300e-2650.49family protein n=1 Tax=Bacteroidia bacterium TaxID... [more]
Uncharacterized8.680e-2655.77protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2... [more]
RidA9.240e-2656.31family protein n=1 Tax=Rhodothermaceae bacterium T... [more]
RidA1.740e-2551.00family protein n=1 Tax=Haloglomus irregulare TaxID... [more]
RidA1.870e-2555.45family protein n=1 Tax=Antrihabitans stalagmiti Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7683contigE_fasciculatus_S2_contig7683:2931..4798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score201.1
Seed ortholog evalue2.6e-49
Seed eggNOG ortholog2880.D7FU38
Model size315
KEGG rclassRC02541,RC02759
KEGG koko:K00459
KEGG ReactionR00025
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009410,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.2-nitropropane dioxygenase
EggNOG OGs2RHJM@2759,COG2070@1
EC1.13.12.16
Cds size315
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842431.0818772-CDS-E_fasciculatus_S2_contig7683:2930..29931696842431.0818772-CDS-E_fasciculatus_S2_contig7683:2930..2993Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7683 2931..2993 -
1696842431.0956473-CDS-E_fasciculatus_S2_contig7683:3682..38111696842431.0956473-CDS-E_fasciculatus_S2_contig7683:3682..3811Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7683 3683..3811 -
1696842431.1065178-CDS-E_fasciculatus_S2_contig7683:4675..47981696842431.1065178-CDS-E_fasciculatus_S2_contig7683:4675..4798Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7683 4676..4798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7683.15854.1prot_E_fasciculatus_S2_contig7683.15854.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7683 2931..4798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7683.15854.1

>prot_E_fasciculatus_S2_contig7683.15854.1 ID=prot_E_fasciculatus_S2_contig7683.15854.1|Name=mRNA_E_fasciculatus_S2_contig7683.15854.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
SFVQVAGTTATDPDGSGVLCIGDVGGQTQYIFHIIALALREAGCSLENVV
RTRMYVTDIKNAEKVMAEHCKVFSSIRPAATLISVSSLVHPDLLVEIEAD
ALEP*
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mRNA from alignment at E_fasciculatus_S2_contig7683:2931..4798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7683.15854.1 ID=mRNA_E_fasciculatus_S2_contig7683.15854.1|Name=mRNA_E_fasciculatus_S2_contig7683.15854.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1868bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7683:2931..4798- (Ectocarpus fasciculatus EfasUO2)
TCTTTTGTTCAGGTGGCAGGCACTACCGCTACCGATCCGGATGGATCGGG TGTGCTGTGCATTGGCGACGTTGGCGGCCAGACGCAGTACATTTTCCACA TCATCGCCCTAGCTCTCAGAGAGGTAAATATAGGCGTTCGCGTGTGTAGG GCGTATGGCGTTGTTTTTTTTCGTGCAGCCAATGCCAATCGTGTGTGACA CGGGTCGGAGCTCCTAACTCATACCCGGCAGAAATACTGTGAGTGTGAGC ACTGGTTCAATGTGATGACAAAAATACTTATGTATATATGGCCTTGTTCA GCCCTCTGGTGATACTACTGTGCTTGTGGGTATTGGCTTACTGAGCTAAT GTCCAACCATCTTGGTTATCGCATGGGTCACGGGAATAGGTGACATCAGG CATCACTCCTGTTTGAAGCGTGAATACGTGCTGTTCCCCCCCTACATGTT GTTCTTGGAGCTCCGCGATAATAGATTACGCGTTTGTATGTTCTCAAGAT GGCATACCTCACAGTCTCAAACAACTATGCCATCACTTCGATTTTATTAC AACGCATTCCTATATTCTCAACACGGCAGGCCTAAAGGCCTCATACACCC CATACCGCCATCACTTCGATCGATTTTTGAACGCTTTTCCGAACGCTTTT CCGAACGCTTCCAATGTTCCGAGTCAACAGCTCCGTATATAGTCTCAACT CGGCACGCCTCAAAGTCTCACAAAACAACCCTGCCGCCACCTTCGATCGG TTTATTGACACGTTTCCCAAGCGCTCATCCGAGTCAAAGTTCCGCATCAT CGGGGAAAACAAAACCCTTTACACGGACGGGTAATGTTCCGCCTACGCTA TGACTTCATTGCTAGTTTGTCCTGGACCCTCATCTATGGAAACATGTGGG TTTGGTGTGCTGTACTGAGAATTGTACTTCTTTGTAGACGGTCGATCGTA ACGGAAGAGAATGATGACGATGCGTTTTCTTGGACAGGCCGGGTGCTCCT TGGAGAACGTGGTGAGGACGCGAATGTACGTGACGGACATCAAGAACGCC GAGAAAGTGATGGCGGAACATTGCAAGGTCTTCAGCAGCATCCGCCCTGC CGCGACCCTCATCAGCGTGAGTTAGTTGCGCCGATTTTTTAGCCACGTCA GTTAGTTGTTGCTGCGTATTTTTTCACGTCGGGAAAAGTTTACGTAAAGA TTTTGCTTGTTGGCGGAATAAATCAGACGCGGGTTTGTAAACAATTGACC TTAAGTTAAAACGAAATCAGAGACGGGTCCGTAGACAAATTGAATAAAGT CAATCCTCTGATTGCTGCACGCCATCCAGAAGAGAGATAAGATGGCTTTC GAAGGCCTCGCGATCGCTCGGTTTCGGGAGCAAGAGGACGTCGTGTCTGT GGAACAACACTTTTGGCTACAGCAGTCATGGCTACGATATAAGAGGGTGG TGTGGTGTGACAAAGGCCGTCGACCCTCTCATATCGGACCGTCTTTTACC GGAATACAAGGGTACCCAACTCTACTATAGCGAGTCAAGTTCGTGACAAC ATGATAAAACCGATTTCGACCCTCTTATGTCGGAGCCCCCTCTTTTAAGG TCGGAGCCTCGACTTTTTGTGTCTTTCTGCTTTGTTCGTGCATGACGAAT CTTGTGTTTTTTTTTGTTTGCGGGTTCGACATGTGCCACATAACCTCTCT TCTTTTTTTTTTTTTGCAGGACGAAGCTTCGTTGTTGTTTTTGGTATACG TATGCGAGACGACATACAATGTGTTTTTTTTTTTCTTTGTGTCGTCGTGA AACAGGTGAGCTCTCTCGTCCACCCGGACCTGCTGGTGGAGATCGAGGCT GATGCGCTCGAGCCTTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7683:2931..4798-

>mRNA_E_fasciculatus_S2_contig7683.15854.1 ID=mRNA_E_fasciculatus_S2_contig7683.15854.1|Name=mRNA_E_fasciculatus_S2_contig7683.15854.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7683:2931..4798- (Ectocarpus fasciculatus EfasUO2)
TCTTTTGTTCAGGTGGCAGGCACTACCGCTACCGATCCGGATGGATCGGG
TGTGCTGTGCATTGGCGACGTTGGCGGCCAGACGCAGTACATTTTCCACA
TCATCGCCCTAGCTCTCAGAGAGGCCGGGTGCTCCTTGGAGAACGTGGTG
AGGACGCGAATGTACGTGACGGACATCAAGAACGCCGAGAAAGTGATGGC
GGAACATTGCAAGGTCTTCAGCAGCATCCGCCCTGCCGCGACCCTCATCA
GCGTGAGCTCTCTCGTCCACCCGGACCTGCTGGTGGAGATCGAGGCTGAT
GCGCTCGAGCCTTAA
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