mRNA_E_fasciculatus_S2_contig7683.15853.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7683.15853.1
Unique NamemRNA_E_fasciculatus_S2_contig7683.15853.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7683.15853.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7683contigE_fasciculatus_S2_contig7683:2100..2847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size748
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842431.0320642-UTR-E_fasciculatus_S2_contig7683:2099..21321696842431.0320642-UTR-E_fasciculatus_S2_contig7683:2099..2132Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7683 2100..2132 +
1696842431.05597-UTR-E_fasciculatus_S2_contig7683:2552..28471696842431.05597-UTR-E_fasciculatus_S2_contig7683:2552..2847Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7683 2553..2847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842431.0468698-CDS-E_fasciculatus_S2_contig7683:2132..25521696842431.0468698-CDS-E_fasciculatus_S2_contig7683:2132..2552Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7683 2133..2552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7683.15853.1prot_E_fasciculatus_S2_contig7683.15853.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7683 2133..2552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7683.15853.1

>prot_E_fasciculatus_S2_contig7683.15853.1 ID=prot_E_fasciculatus_S2_contig7683.15853.1|Name=mRNA_E_fasciculatus_S2_contig7683.15853.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=140bp
MESTHLDSEAKPTASRPGLASSFVRKLTRSRIHSSSGSSRNSSRSIPKQT
HTTTATQRRKEVGAASQAGTTCVTRRRRGKQASLHAERLPARRKPQLTEF
GNQGREANLSLRKLPVSVHLRRLAQPPTTKTRANYLSSC*
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mRNA from alignment at E_fasciculatus_S2_contig7683:2100..2847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7683.15853.1 ID=mRNA_E_fasciculatus_S2_contig7683.15853.1|Name=mRNA_E_fasciculatus_S2_contig7683.15853.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=748bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7683:2100..2847+ (Ectocarpus fasciculatus EfasUO2)
AGAAAATGCAGAAATCGCGGAACGCTTCCTCGCATGGAATCTACGCATCT
AGATTCCGAGGCAAAACCTACCGCCAGCCGTCCAGGTCTCGCCTCCTCTT
TTGTGAGAAAACTAACACGGTCAAGAATACACAGCAGCAGTGGAAGCAGC
AGGAACAGCAGCCGGTCCATTCCAAAACAAACACACACAACAACAGCCAC
ACAACGAAGAAAAGAAGTAGGAGCTGCCAGCCAAGCGGGAACTACGTGTG
TCACTCGCAGGAGAAGAGGCAAACAAGCGTCGTTACACGCGGAGCGACTA
CCTGCAAGACGGAAACCACAACTCACAGAGTTCGGCAACCAAGGGCGTGA
GGCCAATCTTTCACTACGAAAACTACCAGTCAGTGTACATCTGCGACGCC
TAGCGCAGCCCCCCACAACCAAAACCCGTGCGAACTACTTATCTAGCTGT
TGATAACCCACACCGGAAAAAGAGCCGAGCCCAGAGCACGACACTAGGCC
GGGTGTAGCAACAGCAGCGGGGTAGGTTTGTGTGGTAGAAAAAATCGGTG
CACAGCGGGGCACAGCCGAGACCCAGGTCAGATTTTTATGTCACGGGTTG
GCTGCCGTCGCTCCTCCCCCAAAGCGCGAACTTGTTCCGCGTGCACAACA
ACAACAACACCTCTCCGACACAGCTCGTCCACCAAAACTTCCCACCACAG
CTTATTTAGCTCGTCGAGGCGAAAAAGGACCAAGAAAGCCACACAACC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7683:2100..2847+

>mRNA_E_fasciculatus_S2_contig7683.15853.1 ID=mRNA_E_fasciculatus_S2_contig7683.15853.1|Name=mRNA_E_fasciculatus_S2_contig7683.15853.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7683:2100..2847+ (Ectocarpus fasciculatus EfasUO2)
ATGGAATCTACGCATCTAGATTCCGAGGCAAAACCTACCGCCAGCCGTCC
AGGTCTCGCCTCCTCTTTTGTGAGAAAACTAACACGGTCAAGAATACACA
GCAGCAGTGGAAGCAGCAGGAACAGCAGCCGGTCCATTCCAAAACAAACA
CACACAACAACAGCCACACAACGAAGAAAAGAAGTAGGAGCTGCCAGCCA
AGCGGGAACTACGTGTGTCACTCGCAGGAGAAGAGGCAAACAAGCGTCGT
TACACGCGGAGCGACTACCTGCAAGACGGAAACCACAACTCACAGAGTTC
GGCAACCAAGGGCGTGAGGCCAATCTTTCACTACGAAAACTACCAGTCAG
TGTACATCTGCGACGCCTAGCGCAGCCCCCCACAACCAAAACCCGTGCGA
ACTACTTATCTAGCTGTTGA
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