mRNA_E_fasciculatus_S2_contig7681.15852.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7681.15852.1
Unique NamemRNA_E_fasciculatus_S2_contig7681.15852.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7681.15852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J997_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 3.090e-107
Identity = 255/325 (78.46%), Postives = 269/325 (82.77%), Query Frame = 1 
Query:    1 TEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAEREXXXXXXXXXXXKAMAERESLQRDEEKQLMEVIKASLEESLGAGEKDDRDVIAALEASKRDSENNAREEGEDPEVLKVIAESRRQHEAMQELRRVHGDMSGVPPQSPSAAETATTAVAYARDQAYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT------AVPVARDWPMSEVPVPAPAGAAGVVQAPQQGYQGQEVYSAGVDQGHAATPPTLRAPXXXXXXXX--------VYAPHATGG-GCIQVEATTHPGLEPTMAQHAYSVQQQQ 930
            TEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAERE           KAMAE ESLQRDEEKQLMEVIKASL ESLGAGEKDDRDVIAALEASKRDSE NAREEGED +VLKV+ ESRRQHEAMQELRRVHGDMS VPP S SAAETATTAV+YA DQ  H XXXXXXXXXXXXXXXXXXXXXXXXXXXX        VP+A DW +SE+PV APAGAAG +QAP+QGYQGQ  YSAG++QGH ATPPT    XXXXXXXX        VYAPHATG  G + +E TTHPGLEPT +QHAYSVQ+QQ
Sbjct: 1034 TEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAEREKRREAHAKARVKAMAECESLQRDEEKQLMEVIKASLVESLGAGEKDDRDVIAALEASKRDSEYNAREEGEDADVLKVMVESRRQHEAMQELRRVHGDMSSVPPHSQSAAETATTAVSYAGDQTNHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPMAPDWLVSELPVAAPAGAAGFMQAPRQGYQGQ-AYSAGMNQGHTATPPTXXXXXXXXXXXXXXXXXXXAVYAPHATGDCGGVHME-TTHPGLEPTNSQHAYSVQEQQ 1356
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7681.15852.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.750e-30
Identity = 89/92 (96.74%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 TEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAEREXXXXXXXXXXXKAMAERESLQRDEEKQLMEVIKASLEE 276
            TEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAER XXXXXXXXXXX AMAERESLQRDEEKQLMEVIKASL E
Sbjct:  133 TEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAERXXXXXXXXXXXXXAMAERESLQRDEEKQLMEVIKASLVE 224
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7681.15852.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.090e-10778.46protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.750e-3096.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7681contigE_fasciculatus_S2_contig7681:16..2719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1032
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_000870.3
Cds size927
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7681.15852.1prot_E_fasciculatus_S2_contig7681.15852.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7681 100..2698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842430.9388146-UTR-E_fasciculatus_S2_contig7681:15..991696842430.9388146-UTR-E_fasciculatus_S2_contig7681:15..99Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7681 16..99 -
1696842430.991938-UTR-E_fasciculatus_S2_contig7681:2698..27191696842430.991938-UTR-E_fasciculatus_S2_contig7681:2698..2719Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7681 2699..2719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842430.9481068-CDS-E_fasciculatus_S2_contig7681:99..1091696842430.9481068-CDS-E_fasciculatus_S2_contig7681:99..109Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7681 100..109 -
1696842430.9570825-CDS-E_fasciculatus_S2_contig7681:122..6531696842430.9570825-CDS-E_fasciculatus_S2_contig7681:122..653Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7681 123..653 -
1696842430.9658108-CDS-E_fasciculatus_S2_contig7681:1209..13401696842430.9658108-CDS-E_fasciculatus_S2_contig7681:1209..1340Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7681 1210..1340 -
1696842430.974552-CDS-E_fasciculatus_S2_contig7681:1914..20661696842430.974552-CDS-E_fasciculatus_S2_contig7681:1914..2066Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7681 1915..2066 -
1696842430.9832678-CDS-E_fasciculatus_S2_contig7681:2595..26981696842430.9832678-CDS-E_fasciculatus_S2_contig7681:2595..2698Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7681 2596..2698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7681.15852.1

>prot_E_fasciculatus_S2_contig7681.15852.1 ID=prot_E_fasciculatus_S2_contig7681.15852.1|Name=mRNA_E_fasciculatus_S2_contig7681.15852.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=309bp
MRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAEREKRR
EAQAKARVKAMAERESLQRDEEKQLMEVIKASLEESLGAGEKDDRDVIAA
LEASKRDSENNAREEGEDPEVLKVIAESRRQHEAMQELRRVHGDMSGVPP
QSPSAAETATTAVAYARDQAYHHPPPTAAARPVVENQSVPMTLSAAPPPP
PTAVPVARDWPMSEVPVPAPAGAAGVVQAPQQGYQGQEVYSAGVDQGHAA
TPPTLRAPPPPPPPPPVYAPHATGGGCIQVEATTHPGLEPTMAQHAYSVQ
QQQQQHSH*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7681:16..2719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7681.15852.1 ID=mRNA_E_fasciculatus_S2_contig7681.15852.1|Name=mRNA_E_fasciculatus_S2_contig7681.15852.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2704bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7681:16..2719- (Ectocarpus fasciculatus EfasUO2)
ACGGAAGATCGAGTCGAAGCTATGCGGTTGGGGCACGAGCGCGTGGTCGG
GTTGACCTTAGAGGAGGACGAAGAACGGCTGATGAGGATTGCTATCAGGG
AGTCTGCCGCGGAGTCTAGACGAGGTGACATGCCTACTTTGATGGTTGTA
AGGTTGTGGTCTAGAGTGGGCATCGTGTCTACTTTTTATCTGCTTATACT
TCAATACGATGTGTTTGATCGGTGTAAGGTTGTGATCCAGATGAGGTGAC
ATGCCTACTTTTGTACATACTACATGGGTGTAAGGTTATGGTCTAGACGA
GGTCACATGCCCACTACCTACTTGTCTTCCTACTTCATCTTGATGTGTGA
AAGGTTGTGGTTTAGACAGGTAACTGCCTAGTTACTTTCTATTTCACGTT
GATGGGTGTAGGTTTCAATGTGGTCCATTAGCTGGAACAACATCTTACGT
TTTGTTTTTTACCAGCCCTCACATTTTCCTTTCATGTGTCTTTTATTCGC
GCGGACTGGTCTAATGGTTTGATTTCGGTTCCTACTTGTCACGACAGCTT
AAGAAAGCGCGGCCTAGTCTTATGGGTTGATCACGGCCCCTTTTATTGTT
TGGAAAAACCAATGCAAACACGGAAAGACTAACCTTTTGAAATGTCACTA
CAGCTTACGAAAAGAAGTATGGAACGGAGGCCGAACGCGAGAAGAGGCGC
GAGGCTCAGGCCAAGGCTCGAGTGAAGGCGATGGCGGAGCGCGAGAGCCT
GCAGCGCGACGAGGAGAAGCAGCTCATGGAAGTCATCAAGGCTTCCCTTG
AAGAGGTACAGCATCGTCGTCGTCGTCGTCGCGTTCTCACCCGTCTGTCT
ATATGCTCTGCCCGGGGGCGGTCGTGTCTATGCCGTAGGAATGTGGTACC
CGATAGCTGTGCAGCGGTGCTGCAGGCTGTAGAAGGGTGGCCGTGAATAC
GCCGCTTTGGAGGGAGAGCCGCCGTGGAGGGGGTTCCGTGAATTGCCCGC
ATGTCCCCAGTGGCATCCAATGCGAGCTACGGTACACATGCATGACCTCC
CGATTTGAGGTTTCCGGCCACACCGGTTGTTGCGCTGCTAGCTGGCTCGT
TTGTGGGGTTCGTTCCCCTTGTTGCCGCTGGGGTCTGCTGCTACCGCGCC
GCCTGCGCCGCTAAATTTGCAGTGTTTGCCGTCTGCGTCACCACTGCTGT
TGCTTTGATTTTTGGAGGAAAAATACAAGAAAAAAAATGTTGTCGTTTTC
ACAAAATGCGTGGTACTGCTGTGCGTACAACACGAACGTATGTTTATTTT
TTACGGAGAGGAATGTAGTAGCAGAACGCCGTCCTGGCGGGTGTAACTAA
CATGTTGTTGCTGTGATGTCTTGTCGCAGTCCTTGGGCGCAGGCGAGAAG
GACGATCGTGACGTCATCGCCGCCCTCGAGGCCTCCAAGAGGGATAGCGA
AAACAACGCCAGGGAGGAGGGAGAGGATCCAGAGGTGTTGAAGGTCATCG
CCGAGTCTAGGTAGGCAGGCTTTGAAAGCTTCGGTTGGAGGGGATTCTGG
GTCTGTTGATCGATGTACATACCACCGTCGTTTTCGGTGCCGTTCGCGAA
TGAAAAAGAACAAAACTCCCACCCCTTTCCTAACCTGCAAGTGGTCCATC
TCAATGTATATATTTCCTGAATTTCCATATTTCTTTCGCGCACGAGGCGG
CACAAGGGCGGTGTCTACGTCATATCGCTGTCATGGTGTTTCCAACAGCT
GGTCTTCGCGAAGCAATCTTGGTTTCGGCACCCACCCCTGCTGTCGGGCA
GTTACGATTCATCTTTCCGCATCGCGAACCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCACCCCCCCCCCAC
CCCCTCCCCCCGCCGCCCAGCCCCGGCGGCCCAGCCCNNNNNNNNNNAAC
AGTTGGTCTTCGCGAAGCAATCTTGGTTTCGGCCCCCCCCCCTGCTGTCG
GGCAGTTACGATTCATCTTTCCGCATCGCGACCCCCCCCCCCCCGCCCCC
CGTCTTACCCTTCCAGGAGGCAACACGAAGCGATGCAGGAGCTGCGGCGA
GTTCATGGTGACATGTCTGGTGTCCCGCCGCAATCCCCAAGCGCAGCGGA
GACGGCGACGACAGCAGTTGCGTACGCAAGAGACCAGGCCTATCACCACC
CCCCTCCCACCGCGGCGGCACGCCCTGTAGTAGAAAATCAATCTGTTCCG
ATGACGCTATCCGCAGCGCCACCGCCGCCACCGACTGCTGTACCGGTGGC
ACGGGATTGGCCAATGTCGGAGGTACCCGTGCCGGCCCCGGCCGGCGCAG
CAGGGGTCGTGCAAGCTCCTCAGCAGGGGTACCAAGGGCAAGAAGTGTAT
TCTGCTGGGGTGGATCAAGGGCATGCTGCAACGCCGCCAACACTACGTGC
CCCACCGCCGCCGCCGCCACCACCGCCTGTATATGCGCCGCACGCCACCG
GCGGCGGATGCATCCAGGTGGAGGCCACTACCCACCCCGGTCTTGAACCG
ACGATGGCACAACACGCCTACAGCGTGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCAGCAGCAGCCACTGAAGATGCCACCCAGGTTCGACGATGGCAACG
TGGGCGTGCCTCCACCCCCCCCCCCCCCCCCGCCCCTGCCCGTTTGCGTG
CCCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7681:16..2719-

>mRNA_E_fasciculatus_S2_contig7681.15852.1 ID=mRNA_E_fasciculatus_S2_contig7681.15852.1|Name=mRNA_E_fasciculatus_S2_contig7681.15852.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=927bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7681:16..2719- (Ectocarpus fasciculatus EfasUO2)
ATGCGGTTGGGGCACGAGCGCGTGGTCGGGTTGACCTTAGAGGAGGACGA
AGAACGGCTGATGAGGATTGCTATCAGGGAGTCTGCCGCGGAGTCTAGAC
GAGCTTACGAAAAGAAGTATGGAACGGAGGCCGAACGCGAGAAGAGGCGC
GAGGCTCAGGCCAAGGCTCGAGTGAAGGCGATGGCGGAGCGCGAGAGCCT
GCAGCGCGACGAGGAGAAGCAGCTCATGGAAGTCATCAAGGCTTCCCTTG
AAGAGTCCTTGGGCGCAGGCGAGAAGGACGATCGTGACGTCATCGCCGCC
CTCGAGGCCTCCAAGAGGGATAGCGAAAACAACGCCAGGGAGGAGGGAGA
GGATCCAGAGGTGTTGAAGGTCATCGCCGAGTCTAGGAGGCAACACGAAG
CGATGCAGGAGCTGCGGCGAGTTCATGGTGACATGTCTGGTGTCCCGCCG
CAATCCCCAAGCGCAGCGGAGACGGCGACGACAGCAGTTGCGTACGCAAG
AGACCAGGCCTATCACCACCCCCCTCCCACCGCGGCGGCACGCCCTGTAG
TAGAAAATCAATCTGTTCCGATGACGCTATCCGCAGCGCCACCGCCGCCA
CCGACTGCTGTACCGGTGGCACGGGATTGGCCAATGTCGGAGGTACCCGT
GCCGGCCCCGGCCGGCGCAGCAGGGGTCGTGCAAGCTCCTCAGCAGGGGT
ACCAAGGGCAAGAAGTGTATTCTGCTGGGGTGGATCAAGGGCATGCTGCA
ACGCCGCCAACACTACGTGCCCCACCGCCGCCGCCGCCACCACCGCCTGT
ATATGCGCCGCACGCCACCGGCGGCGGATGCATCCAGGTGGAGGCCACTA
CCCACCCCGGTCTTGAACCGACGATGGCACAACACGCCTACAGCGTGCAG
CAGCAGCAGCAGCAGCACAGCCACTGA
back to top