mRNA_E_fasciculatus_S2_contig7673.15843.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7673.15843.1
Unique NamemRNA_E_fasciculatus_S2_contig7673.15843.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7673.15843.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.670e-33
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 3 
Query:    3 SRFAKFATGLREFGNDINANISKALNVNISKVSEDPNSILLEEARAGRVDGLKACLDEFASRTDVN 200
            SRFAKFATGLREFGNDIN NISKALN  ISKVSEDPNSILLEEARAGRVDGLKACLD+FASRTDVN
Sbjct:    2 SRFAKFATGLREFGNDINVNISKALN--ISKVSEDPNSILLEEARAGRVDGLKACLDDFASRTDVN 65
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BLAST of mRNA_E_fasciculatus_S2_contig7673.15843.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.320e-27
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:    3 SRFAKFATGLREFGNDINANISKALNVNISKVSEDPNSILLEEARAGRVDGLKACLDEFASRTDVN 200
            SRFAKFATGLREFGNDINANISKAL+  ISK SEDP+S+LLEEARAGRVDGLKACLD FASRTDVN
Sbjct:    2 SRFAKFATGLREFGNDINANISKALS--ISKESEDPSSVLLEEARAGRVDGLKACLDNFASRTDVN 65
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7673.15843.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.670e-3393.94protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Protein2.320e-2789.39kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7673contigE_fasciculatus_S2_contig7673:228..3263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842429.8867505-CDS-E_fasciculatus_S2_contig7673:227..3221696842429.8867505-CDS-E_fasciculatus_S2_contig7673:227..322Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7673 228..322 +
1696842429.90311-CDS-E_fasciculatus_S2_contig7673:3155..32611696842429.90311-CDS-E_fasciculatus_S2_contig7673:3155..3261Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7673 3156..3261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7673.15843.1prot_E_fasciculatus_S2_contig7673.15843.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7673 228..3261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7673.15843.1

>prot_E_fasciculatus_S2_contig7673.15843.1 ID=prot_E_fasciculatus_S2_contig7673.15843.1|Name=mRNA_E_fasciculatus_S2_contig7673.15843.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=67bp
CRALLSLRLACESSGTTSMPTSPRHSMSTSQRCRRTQTASYWKKRGPAEW
TASRHAWTSSRLGRTST
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mRNA from alignment at E_fasciculatus_S2_contig7673:228..3263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7673.15843.1 ID=mRNA_E_fasciculatus_S2_contig7673.15843.1|Name=mRNA_E_fasciculatus_S2_contig7673.15843.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3036bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7673:228..3263+ (Ectocarpus fasciculatus EfasUO2)
TGTCGCGCTTTGCTAAGTTTGCGACTGGCCTGCGAGAGTTCGGGAACGAC
ATCAATGCCAACATCTCCAAGGCACTCAATGTCAACATCTCAAAGGTGAT
GATAATAATAAGAGACGAGAAAACGTCGGGGTGATTACATGTATGCATAG
TCTATTGATTTTTTTAATTTGAACACACGATGCGAGATTCTGTCATCAAC
AGCAAGTAGATGCTGCATGCATGTACAGCACGTATGGTATGTGTTTGTGG
TAGGTGTCTCCAGCGTCGGCATGAGATGCTGTGTTTCTCTCCTCTTCGAC
GTTTGGGAGGCGGTGGCGATCCCTTCTGGCCCCCCTCTTGTCAATCAATC
GAGCGAAGGAAAATAATGGTTGTAGAACAGCCGCGGTGCCAAGCACGGCT
ACTGCTTTTGAAGCTTTGAAGCACACGTCGTGGAGCACACCTATCTTCAA
CCTTGCTTCGGATCTACTGCTGTACTCAGACAAAGCTTCACCTGCTCATC
GCAATGCGTCAGACCATACAGCAGAGCTGGACAGGTACCGTATTACGAGG
TTGGCGTGCTTTGTCGAGTTGATTTGTCTGCGAGGGTTGTTTCGTGTTTG
GACCACGGCTGGCTTTCACGAGCGTAATGTCGATTTTGATTTGAGCCGCA
CTCGTCCGCACCGCTGAACATGCGACTCCACCCTCTTCCCAATGAGATAA
TTTCGATCACGTCCCCACAACAGCAACGTCCGCACAGCAGTGTTTGCTAC
ACGATACGGCCTTGCGGACGCCCCTGCATGCATTAGACAAGACCGAATCT
ATGTACAGAAGGGGTGTTAGCTGTGGGGGTGGACGCGCGATGTCCCAGGG
AAAAATCGCCGGCGTCTCGTAAGCCTAAGGAAATTTCCGCACAGTCTTTT
GGTCTCACAATGCCGAGGCGGGAAGGGGGACACCCACCGCAGCAGGGCGA
CGCTCGATTGCTCCACGTCCGCGAGGGCACGAAAACCGAACGATCCATGC
GAGGAACAATTCTAGATGATAACTTTTCAACACTACCGATTTGGGCATTA
CGTAGCGCAGCCTACAGTAGTATAGTATACTTGCATATCATGCATATGAG
AGCCTGCTGTGTAGGGTGAGTGGGATGGATCGCATGCACGTACGTTGACG
ACAATTTAATCTTGGAGCAAGTTGTGGACTAACGGCCTTTTACCTCTCCC
GAAAAGCTCTGGCGGAGGAGCCCAACCTTTGCACTGCACAGGAGTCTACA
ATCCTAATATTCTGGAGAAATTTTGCGTTGTAAGTTGTTGTAAGTGAAAT
AACATGAACGATGTTCAGCAGTAGAGTACAAGTAGTATCGTGGTGTTGCG
GCGGGGTGACCAGACGTTGAGCAAAGCGCCCGAGCAGCCGCTCAACAAAG
AAATCAATCAACGCTAGTGGAGGGGATGAATTTTTTGTTGTGTCGGAAAG
GTTGGTCATGTAGTGCATACCGCACACTGCTGTACCGCATTAGAAATGGC
CCGTTCGTTCGGCAGAAATTTCTCTCGGGCTCTCACCGCAGCGCTGCATT
CTCCGGGCTCATTTCTCCGGGCTCTTTTGGAGCGTTGACAGAATACAGAT
CTATATTCGCGTCACTTGAAGTTAGAGTACCCCCATGCCTCTCATGCCGC
TACATTCCTTTTTTTGTTTACCCCGCGCTCCTATACTGCAAGGGGCCTTC
CACTATACATTCGGTTGTTCAACGACGAGCAGTCATCGGGTGCGCGCGTA
CAGCAGTGGTTAGGCCCGTTCCCCTCCCATAAGGCGTTCATGGACCCGTT
GTTCTAATGCAGATCCTCTTTTCTTCACCCCTCCCAGTCAGATGCTGGTT
GCCGGTGTATCTAGTCTGCGTTGAGTACACAGCTTTTCGCGGGCTATTGC
GTGTCAGGGGCGTGGTCCACATACGTGTGACCTCTCCCGACTGCTGTGTA
CCCGCATGTTTCTGACACAGTGGGCATGTGTCTAAACCCAATCGAAAGTC
TCTCTCCCCACTGTGTCTCTCCACTGCTGTGCCCCCCGTTCCATCAGACC
TGCAGTAGAGTAGACCTCCCTACACGTCATGTCTTGGAGCCGGGCCCGTG
ACTCGGGGTCCCTTAATGTCATGATGCGCATAAACTGCATATATAGCTAC
CGCCCCCGTGATGTATGCATGCAGTATGCGTATATGTTAATATATGTTAA
TTAATTGTTTTTGTTTTGGGTTTGGGGTGTATTTATTTATTTTTTGGTTT
TGGAGAGTTTATTTTTTGGTTTTGGGGAGACAATATGCAACACTTGTTCA
CCTGTGCTGCAGTCGTGATCTTGGTATTTATGTATTTATTTAGTTTTTTT
TCGTGGCGATGGGTTGGCGCATGTGGATGCCTCGATGCATGAGTACAATT
ATTCGCTTCGTCTTTCTTTTATGGCACAGCGAGTCTTGTGTTAGGCTGTC
CCAAGGCTCGTCGGATGACACGAGTCGAGGGAATGCCGCAAGCGCTCTCT
CTTCCGCACAGAAACATGTATTTGCACTATAAGCCAGTCTTCCACGAACC
ACGATTGTTGAGTGTGCTACTGGCGCCGTGCATCATGCCGAACGCCGGGT
ACAGTCCCCCAAACATGAGGCTTACGGCGTTGTTGTTCTTGCTGTCATCT
TGACTGTAGTAAACTAGCGTTTTGGCCTCTGTTTCGTGCCACCTTTAGGC
ACATACATGTATTCGCGAGAAGGCCGATCGCAAAGTGTGAAAGAGGCCCG
ACGGCGCATCAACGCGTTTTTTTGGGATAGGATAGGCGGAGAAGAGAAGA
GAGCCTTCGAAACTACTGCACTGCACTGCTGTCGACGACACATTTCTTAA
TCTTATCGGCGTTCTCCACCGACAGCAGTTGTACCGTATGGCCGTCCCCG
CGTGCCCCTCGTGATGCGCTCGGAGCAGGTGTCGGAGGACCCAAACAGCA
TCCTACTGGAAGAAGCGAGGGCCGGCAGAGTGGACGGCCTCAAGGCATGC
TTGGACGAGTTCGCGTCTAGGACGGACGTCAACGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7673:228..3263+

>mRNA_E_fasciculatus_S2_contig7673.15843.1 ID=mRNA_E_fasciculatus_S2_contig7673.15843.1|Name=mRNA_E_fasciculatus_S2_contig7673.15843.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=201bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7673:228..3263+ (Ectocarpus fasciculatus EfasUO2)
TGTCGCGCTTTGCTAAGTTTGCGACTGGCCTGCGAGAGTTCGGGAACGAC
ATCAATGCCAACATCTCCAAGGCACTCAATGTCAACATCTCAAAGGTGTC
GGAGGACCCAAACAGCATCCTACTGGAAGAAGCGAGGGCCGGCAGAGTGG
ACGGCCTCAAGGCATGCTTGGACGAGTTCGCGTCTAGGACGGACGTCAAC
G
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