mRNA_E_fasciculatus_S2_contig7669.15838.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7669.15838.1
Unique NamemRNA_E_fasciculatus_S2_contig7669.15838.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.920e-43
Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  255 TPDEWGTAVANSDATKLAELVLAWSGSKPERALSVVRNCVSLMEKEVEFSTP-ACRLPSPPTTPGPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
            +PD+WG AVA  DATKLAELVL WSGS+PE ALS++R CV L+E+E  FS P +  L SP  T GP+R+SCLK ++VALNE+CDGK WYTSTKELQLASLELC+ACR Y+ L L VD
Sbjct:   66 SPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVD 182          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.220e-37
Identity = 68/104 (65.38%), Postives = 86/104 (82.69%), Query Frame = 3
Query:  294 ATKLAELVLAWSGSKPERALSVVRNCVSLMEKEVEFSTPAC-RLPSPPTTPGPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
            AT+LA+LVL WSGS+PE ALS++++CVSL+EKE  FS PA   +P  PT PGPSR+SCL A+ +ALNE+C+G+ WYTSTKELQLASLE C+ACR+Y+ L L VD
Sbjct:   56 ATRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVD 159          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.250e-35
Identity = 71/112 (63.39%), Postives = 82/112 (73.21%), Query Frame = 3
Query:  270 GTAVANSDATKLAELVLAWSGSKPERALSVVRNCVSLMEKEVEFSTPACR-LPSPPTTPGPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
            G+AVA+  ATKLAELVL WS SKPERALS+ R CVSL+EKE   S      L    T PGP R+SCL AI VAL+E+CDGK WYTSTKELQLASL  C ACR+++ + L VD
Sbjct:   71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVD 182          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.460e-22
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   36 MEGDAGSGSSIAADEWGSAVASGDATKLAVLVLLWAASKPERALSILKDCVSVLEREVVVSVPASSPLQLPPTT 257
            MEG AGS SS   DEWG AVASGDATKLA LVLLW+  KPERALS+++DCVSVLE+EV +S P SSPL+  PTT
Sbjct:    1 MEGRAGS-SSARPDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTT 73          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.490e-16
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 3
Query:   36 MEGDAGSGSSIAADEWGSAVASGDATKLAVLVLLWAASKPERALSILKDCVSVLEREVVVSVPASSPLQLPPTT 257
            MEGDAGSGS+   D WGSAVASGDAT LA LVLLW    P  ALSIL+ CV+VLE+EV +S P SSPL  P T+
Sbjct:    1 MEGDAGSGSA-RPDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQTS 73          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.280e-15
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 3
Query:  444 GPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
            GP+R  CL+A+ VALNE+CDGK WYTSTKELQLASL+ CIACR+ + + LNVD
Sbjct:   45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVD 97          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.890e-15
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 3
Query:  444 GPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
            GP+R+SCL AI VALNE+ DGK WYTSTKE QLASLE CIACR+++ L L VD
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVD 58          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.030e-15
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 3
Query:  438 TPGPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
            +PGP+ N+CL AI VAL E+ DGK WYTSTKELQLASLE C+ACR+Y+ L L VD
Sbjct:   28 SPGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVD 82          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.640e-14
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 3
Query:  444 GPSRNSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
            G + N CL ++ VALNE+CDG  WYTSTKELQ ASLE CIACR+Y ++ L VD
Sbjct:    8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVD 60          
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.500e-13
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 3
Query:  456 NSCLKAISVALNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD 602
            +S  K + +ALNE CDGKRWYTSTKELQLASLE C+ACR Y++L+L VD
Sbjct:   15 SSGSKDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVD 63          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7669.15838.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.920e-4367.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.220e-3765.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.250e-3563.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.460e-2271.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.490e-1666.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.280e-1569.81protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.890e-1571.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.030e-1569.09protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.640e-1464.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.500e-1369.39protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7669contigE_fasciculatus_S2_contig7669:1533..7321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size602
Hectar predicted targeting categoryother localisation
Exons4
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842429.1262333-CDS-E_fasciculatus_S2_contig7669:1532..16901696842429.1262333-CDS-E_fasciculatus_S2_contig7669:1532..1690Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7669 1533..1690 -
1696842429.136016-CDS-E_fasciculatus_S2_contig7669:5456..56391696842429.136016-CDS-E_fasciculatus_S2_contig7669:5456..5639Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7669 5457..5639 -
1696842429.1459522-CDS-E_fasciculatus_S2_contig7669:6069..62581696842429.1459522-CDS-E_fasciculatus_S2_contig7669:6069..6258Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7669 6070..6258 -
1696842429.1561277-CDS-E_fasciculatus_S2_contig7669:7249..72861696842429.1561277-CDS-E_fasciculatus_S2_contig7669:7249..7286Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7669 7250..7286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842429.1665206-UTR-E_fasciculatus_S2_contig7669:7286..73211696842429.1665206-UTR-E_fasciculatus_S2_contig7669:7286..7321Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7669 7287..7321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7669.15838.1prot_E_fasciculatus_S2_contig7669.15838.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7669 1533..7286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7669.15838.1

>prot_E_fasciculatus_S2_contig7669.15838.1 ID=prot_E_fasciculatus_S2_contig7669.15838.1|Name=mRNA_E_fasciculatus_S2_contig7669.15838.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=189bp
MEGDAGSGSSIAADEWGSAVASGDATKLAVLVLLWAASKPERALSILKDC
VSVLEREVVVSVPASSPLQLPPTTPDEWGTAVANSDATKLAELVLAWSGS
KPERALSVVRNCVSLMEKEVEFSTPACRLPSPPTTPGPSRNSCLKAISVA
LNESCDGKRWYTSTKELQLASLELCIACRSYRMLQLNVD
back to top

mRNA from alignment at E_fasciculatus_S2_contig7669:1533..7321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7669.15838.1 ID=mRNA_E_fasciculatus_S2_contig7669.15838.1|Name=mRNA_E_fasciculatus_S2_contig7669.15838.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5789bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7669:1533..7321- (Ectocarpus fasciculatus EfasUO2)
CGAAAGGTCTGAATACGAGTGGCATATAGAGCGTCATGGAGGGAGACGCC GGTTCGGGGTCCTCAATAGCTGGTGAGCAAAGAAGGAGCTGTATCGTGCA GAAATCGGGTTCCAGCTTTGTTCTCTCTTAATCTGATAAGAGTCGAGCCT CACAAGCGCCACATGGATGCTGGTGCCGTGAACTTCTTCCGTTCGATCCC TTCTTCGTTTCTGTTTCGATGAGCAGCGCCAGTTGCGGGCTCGGCAGTCG CAGCGTGATTCCTGTTGGCTGGTGATTTCTCTGCCCGTCTCGAGCGTGTC CTGAATGCTGCTATGCATAGATGGATCGTTCTTTTGTTGGTACCTTAGTC CCGCTTTCCCTAGATGCGAAAGGTGATTTCTAGGCATCAACGTGCCGCAA GGCATGTCGAAGGAACAGCTCTTCATACACTTGGGAGCTACGGTATTTTT TGTCCATGGCCACGTTGCTTGCAGTCTTCACATGTTTCGAAGGCAGCCTG ACTGGGCTGTCTCTTGGAAGTTGTTGTGCTCCCTCATGCGGTTGGACGCC ATTGACTGCTGGTGCGTCCTTTTGTATTCAGCTATGTACCGTGCTATGGA GTTCAAGTGCTTCCTTCGATAGTGTTGTGACGCGCCGTCTTTAGATTTGA TGCATATGGGGAAAAGGTCGGGTACGTCGTTTGAGTGGCGCTCTACAGCT GACAGCTCTACCGCCAGATTGTTGAGGCATTTTCGAGAATGGGAAGACAA GCCACGCGTACGACACCCTCTGCGGCCGATGTTCTCGGGCAATGGAGCAG CGCATGCGAAGCATGACATGGACATTTTCGTCAGATTTTTGCTTGGGACA CGGGGGACAAGTGTCTGAACGCGTGAGCCTTGTGATGTACCGAAGCCTCT CCTCTGGAACATATCCAGGAACTTGTTGCGATTGATCGCTCTCGGAGAAG ATGGCCGTATTCGCAGGTGGTAGTAGGGTTTCATGTCGAACCTTGATGTC AGCCTGTAACCCATGCTGACCCAGCAATTGTCTTTGACAACACCGACACA ACTGACGATTCAGCAGATGAATGGGGTTCGGCCGTGGCGAGCGGCGACGC GACCAAGCTAGCCGTGCTGGTGCTGCTTTGGGCCGCTTCAAAGCCCGAGC GGGCTCTGTCGATTCTAAAAGACTGCGTTTCTGTGCTGGAGAGGGAGGTT GTGGTTTCAGTTCCGGCTTCTTCTCCCCTTCAGTTGCCCCCGACTACGCC TGGTGGGTTCCTTTTTGTCGTTTAGAGTTCTTGAATTGGCCTGCACCCGG ACCGACTTGAGGAGACGCCACGGGTCTTGCATGGTGGCTGAGAACTGCTC GTGTTCTTTCCTAGCAGCGAGGCGTGCAGAGGAATGCTCGGAGCGTAGCG CCGGTCGTATGATATGACGCTATCCCGTCATGTGTCCTTGGCCGTTTTGT CCCAAGGTTGGACGGGCGTTTCAACGTGTCGCAAGCTTTGTAGATTCGTC CGGTAGTTGAATATCACATGTCACGACTGAATCCTAATTTTGTGACGACG CATGGACCATTACGAGGAAACAGGTGTGTTTGAATCTCTTTCGAGAGAGA TCGCGGTATTCGGGAGTAGGCTTTGACGAATCCGAAACCACCGCGTACCC TTGACACCACCAGCCATCTGATGATTCCACAGATGAATGGGGCACGGCCG TGGCCAACAGCGACGCTACTAAGCTAGCCGAGCTGGTGCTGGCTTGGAGC GGTTCAAAGCCCGAGCGCGCTCTGTCCGTTGTGAGGAACTGCGTTTCTTT GATGGAGAAGGAGGTTGAGTTTTCAACGCCGGCTTGTCGCCTTCCTTCGC CCCCGACTACTCCTGGTGGGTCCTCGAGGAATTTGCAACCAATGCTCTCA TCGAGTTCAATATATACCTCAAGTCGTGCTTGGCTGTTGGCTGGGAAGAG TTTCTTGCGCGATGACACCGATCGGGAGTGAGGGCGTAATTTTGTTAATC GAGTATTGACATCTGTGACCATACTTGGACGGGCGGACCATGAACGTAAC GGCGGCGTCAGCTTCTTCGCCGTACCCGATGTCCCCGGGGCTCCGTGATT GCGGTTTTTCCCCACGCGTGCAGCGTAGTGTTTCAGCTCTCTTTTCGAGC CCCCTATTTCCGACCATACCATATTCGGCACCGCCACAACAAGGCCTCAC ACACTACTTGGCACGACAAAAACTCTCAGTGTAGGCCTACGTCCATGATT CTCGACAATGATCAGCTCCAGCAGAGCAGTCTGTGGGGTCCCCAAAACAG TGCGTTGGTCGGCTGAGGGAGTAAGGCGGGATGGTAAAGTGTCGTTTTGG GATGAGATGGGGCGTGTACTGCATTACAGTAAACGTTTCGTCATCAAAGG ATGTTCGGGCGTTACACCCACGAATATCCTGATATGGGCGACAAGAGCAC ACTGGTGACTCTTCGGCATAATGCAGAAGGCGTTCGTCGGTTGGATCAGC CGTACTGTAAAATGTTGTGCAATTCGTTGCAAATGCTTTGCTGGTAGCAC GATCCTTCGTGAAACCAAGCGGATTCGCATTCACTAGTGAACTGACGTAG ACGTATGTTCTGTGGTAGGTGTCGAATCCCACTTGATATTCGACGCCTGT TAGCATCTCAAATTGTTTCACCAATTAATGTCAACAAAAGGGATACACCA CGCACGTTTTCTCTCCATGACACAATAACGTGCCACGGTTGAGACAGGAG ATGGAAACCCTTGACGAAACTCTCATTCTTGGCAATCTAGCAACTCAGCC GTCTTCTGACATCGGAAAAAACAGGCATTCCGTTGAACCGGATTTTTGTT TTGACCGTTTTTCGGTTTCACTGGATTGGTTTTTACTTCACAATCGGTTT AACATTTTGTTTTGGAATACGGCTTGAGAGCTTGCCCGGAAGGGGTAACC ACCGGATTCGGGTCCACCTGTTGTTGGTCTTACCCGACACGGTGTTTGTG CGGTTATAGTATCAGCGCAAAACGAGTGCACCTGTTTAACCGCAAAACCG CATACTATACGGTGAAATCAAATCTGGTTAACATTGTTGGGCAAACTGTG CAGCGATAATCCGATTAAACCGATTGAACAGGTTGCCAGAATACCCATTC CGTTCACACCAAACGCCGGTTAACTAAAAAAGACTGTTAAATCGAAGTCT GGCTAAAAACCGTGTTGCGGTCAAAAACCGAAATCCGGTTAAACCGGAAT CCTCTTAGTCGGAATCCAGTGTTGTCGGAATACTTTTATTTGCGGACAAT ATTATGCGGACAATATTAGACGCCTAGGCTGCTAGATTGCCAAGAACACG ACCTAAACGGTGTTTCGTCAAACGTTTTTACCACCTGTGTCAACCGTGGT AGATCATTTCTTCGCGATGAGAACGCGCCTGGTGTGTCCGTTTTGTTGTC ATCATTTCGTGAAACCACCGGCGCCTACCTCCGTGGAATATCGAGTGAGA TTCGACGACAACCACAGAACAGACATGAACGTCCCTGCACTATTTAGTGA ATTAGCATCCTCTTCGTGTCATGGAGCTTTCGTATCACCAGCAGCGATAT ACCGAGGGGTTTGGATTATATCAAAGGTGGTAAACAAGGAACTACCCCGG GAACTGACCACCAGGCTCCACGCTGATAGGTCACAGCCACCGAGTACCGT TTGTGGCGGCTCAAGCGTAAAGTACGGTGACCGGCTTCCCCAGTCGGGCT TCACCGTTTGGTGTCACCCCGTTTGTAGTGTCTGTCACAATCAAGAACTC CCGCACATACACTCCCTAGCCGGTTGCTTCTCCCGGATTGCTCGACTTGC TGATCATGTAAGGAATTACATTACACATGGACTCGCATCGACAATACTCA TTGCTATCAATCTAGCTGCACGACCCATACACATCGAGGTTTCTATTGAC CTATTCAACCTCGTCGATGTTCCAACCATGCACAACTCACAACTATATGC AAAACACGCCACCGCCTCCGCACACATTCCACGTATGTTGCACGAGATCG GACGGTCCCGTGTCTGCATCCACCGCAGAACCTTCCTCCTGTCGCTCAAC CCCACACCTACGTCTGTGTCGGCAGTGCGCAGTGGATGCACATGCTTTTT GCGCGCTGCTGTCGCCGGCTCCGTTCTCCCTGCAATCACTTAGCTTTCGA GATACGCCTTGTTTGAGATGCCTTTAGCGCTACCCATGGTTGCAAAACGG AAACGGGGGCCCGTTTACACAACGATGAAAACCGGCTTGACGAGCTCGGT AGCGGTCCTCTCCACTTGAGCCACCACCAAACGGTCAACTAGGTGGTCTT GGCCAATCAGCGGGGGGCCTCGGGGTCAGCTTCCGAGGCACTTCCTTGTG GACCGTTCTGTGTTGCTCAACTCCCCCAGTGTAGCGTTGCCTGCGGTTCG CCCTTATGAATGAAGGATAACCTAGTGTGGAAGGCTGGTCTCCCAACGAA CAACATACGCGTGTGCAGACGAACTTCGTTGGAACAGGCCGCTTCCCACT CTCGCGTCTGCGTTACGTGCTGGTCTGTCTTTGGCACGCTCACGAAGCTG TTAACGTTCTGCATCGACGCATGACACGGTCAGGGGTCGTCCGGCGATGC GTTTTTCCTGCAGAAAAAACGGATGGCGGTAGCAATGGTGTTGTATAGCA CAGCGTTCGGGACGATTCAATTCGCGCGATACGAACCGTTTAAAACCTCT CCTGGCTTTCGGTCTTCGGGAGAAGATTTGTTCAAATACCGTATTTGTTT GGTCCTTAATTTGCTCAAAGTGGCAACGAGTTGGTCCTTGACAAATCTTG GCGAAGATCTGGCGCAACACTTATGTTTGCCGTAGAACTTTGTTTCTCAT CGAATGAGAAACAAAGTCTTTTCCTAGGCAATTTGCGGCCAGAATCTAGG TTTGGCCTCCAAGATTCTGTTGTCAAAGAGTGGTGTAAACATCTCATGTG CGATATATAGTAAACGATGACTCTTGTGTTGATAGAATCTTGTTTGTTCT CGTTGCCGTTGTACATCCTTTAGTGGGCTATGAGCGGTAGGTTGTAACCA GTGCATTGTGACCATTGCTGATCGCCGCACAGTCTCTTGTCACCATTAGC CCCACCAGGTTACCGTATTATCTTTCACATTCAGTGTACCACCTTTCGTC TGTTATTGTGTTGTCCCCGAAGAATCAGGCAATTCCGAGGTATAGCACTC CCACCAGAGCCGTTGCAGTCGAAATCCTCGAGGGTTCGTTTGAATCAACC GGCCAGATTGTTTTACACACTGTTCGTGCGTCGGCTCGATCATGACATAC CTGGCACTTGTTTGCGCGTGAAGCCCTTGGGAATGTAATTGGCCAACTGG TTTTTGGTATATATATGACGTTGGCCATAGCTTGATGCCTTAATGACAGT CTAACATTTTGCCAAGCGACTCATATATGTGTAAGCGTGGACACTTTAGT GACCTCTGTGCCGGTTGTGTCATGACCTTGGAGGAGTTTCGTATCCTACT GCCACGCAATGGAAGGTTTGCATGACGTCACAGTTGTGCCCAGGCTTATG TGCGCACCCTTACACCGTGTTCGTTCCGCAGGACCCAGTCGAAACTCGTG CTTGAAGGCGATCAGCGTTGCTTTGAACGAGTCGTGCGATGGGAAGAGAT GGTACACGTCGACCAAGGAGCTGCAGCTGGCCTCTTTGGAGCTCTGCATT GCGTGCAGAAGCTATCGGATGCTGCAGTTGAACGTCGAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7669:1533..7321-

>mRNA_E_fasciculatus_S2_contig7669.15838.1 ID=mRNA_E_fasciculatus_S2_contig7669.15838.1|Name=mRNA_E_fasciculatus_S2_contig7669.15838.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=567bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7669:1533..7321- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGGAGACGCCGGTTCGGGGTCCTCAATAGCTGCAGATGAATGGGG
TTCGGCCGTGGCGAGCGGCGACGCGACCAAGCTAGCCGTGCTGGTGCTGC
TTTGGGCCGCTTCAAAGCCCGAGCGGGCTCTGTCGATTCTAAAAGACTGC
GTTTCTGTGCTGGAGAGGGAGGTTGTGGTTTCAGTTCCGGCTTCTTCTCC
CCTTCAGTTGCCCCCGACTACGCCTGATGAATGGGGCACGGCCGTGGCCA
ACAGCGACGCTACTAAGCTAGCCGAGCTGGTGCTGGCTTGGAGCGGTTCA
AAGCCCGAGCGCGCTCTGTCCGTTGTGAGGAACTGCGTTTCTTTGATGGA
GAAGGAGGTTGAGTTTTCAACGCCGGCTTGTCGCCTTCCTTCGCCCCCGA
CTACTCCTGGACCCAGTCGAAACTCGTGCTTGAAGGCGATCAGCGTTGCT
TTGAACGAGTCGTGCGATGGGAAGAGATGGTACACGTCGACCAAGGAGCT
GCAGCTGGCCTCTTTGGAGCTCTGCATTGCGTGCAGAAGCTATCGGATGC
TGCAGTTGAACGTCGAC
back to top