mRNA_E_fasciculatus_S2_contig7667.15836.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7667.15836.1
Unique NamemRNA_E_fasciculatus_S2_contig7667.15836.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7667.15836.1 vs.
Match: Chain (A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ90_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 4.010e-93
Identity = 186/210 (88.57%), Postives = 199/210 (94.76%), Query Frame = 1 
Query:    1 MVNLHDLANKGDLEGVRKFLAKSAAKINNTDKAGQTPLHLAAKGGHVEVCREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQVLCEAGASTTVGMETSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNKWGSLPEEDCVVSEIRTLIAAARQERDAAGPGAGATSSSPYNPYAASAPPPTGERKEGVGYHPGCSSPEAPPSYHES 630
            MVNLHDLA+KGDLEGVRKFLA+SAAKINNTDKAGQTPLH+AAKGGHVEVCR XXXXXXXXXXXXXXXXXXXXXXXXXXXXX AQVLCEAGAST+ G++TSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRN+WG+LPEEDCVVSEIRTLIAAARQERDAAGP AG   SSPYNPYAASAPPP  ERKEGVG+ PGCSSP+APPS+ ++
Sbjct:    1 MVNLHDLASKGDLEGVRKFLARSAAKINNTDKAGQTPLHIAAKGGHVEVCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQVLCEAGASTSAGLQTSDGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNRWGNLPEEDCVVSEIRTLIAAARQERDAAGPVAGVAGSSPYNPYAASAPPPMEERKEGVGFPPGCSSPQAPPSFEKT 210
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BLAST of mRNA_E_fasciculatus_S2_contig7667.15836.1 vs.
Match: E3 (ubiquitin-protein ligase MIB2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455D524)

HSP 1 Score: 56.2 bits (134), Expect = 1.270e-5
Identity = 37/147 (25.17%), Postives = 63/147 (42.86%), Query Frame = 1 
Query:   22 ANKGDLEGVRKFLAKSAAKINNTDKAGQTPLHLAAKGGHVEVCREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQVLCEAGASTTVGMETSDGRSPLHIAANKGFVECAEVLLQH-GAPIDTS-RNKWGSLPEEDCVVSEIRTLI 456
            A  GD+E VR+ +  +  ++N  +  GQTPLH+ A  GH++V +                                + L + G    V      G + LH+AA  G  +CAE+LL+H   P+D   ++  G+ P    ++   R ++
Sbjct:  351 AATGDIEKVRETIKSNPEELNFKNSIGQTPLHVGAYKGHLDVVKAFIDSKAPLEQKDEGGNTALIFAVFGKEPEIVEYLLQRGCD--VNNANKQGSTALHLAAAAGHRKCAEILLKHENKPVDVKFQDIHGNSPLFIAIIQNDRRIL 495
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BLAST of mRNA_E_fasciculatus_S2_contig7667.15836.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AWP9_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 3.820e-5
Identity = 27/65 (41.54%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:  262 EAGASTTVGMETSD--GRSPLHIAANKGFVECAEVLLQHGAPIDT-SRNKWGSLPEEDCVVSEIR 447
            E G +   G+E+ D  GR+PLH+A   G ++CA VLLQHGA +   +RN W       CV    R
Sbjct:   30 ELGTNEQTGLESLDPRGRTPLHLAVTLGHLDCARVLLQHGADVSKENRNGWTGKCVSLCVSGVCR 94
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BLAST of mRNA_E_fasciculatus_S2_contig7667.15836.1 vs.
Match: Ankyrin (repeat domain 13B n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2YZN0_ESOLU)

HSP 1 Score: 50.8 bits (120), Expect = 4.710e-5
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  262 EAGASTTVGMETSD--GRSPLHIAANKGFVECAEVLLQHGAPIDT-SRNKW 405
            E  A+  V +ET D  GR+PLH+A   GF+ECA +LLQHGA +   +R+ W
Sbjct:   30 ELSANEQVDVETLDPRGRTPLHLAVTLGFLECARLLLQHGADVSKENRSGW 80
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7667.15836.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Chain4.010e-9388.57A, 4ank: A Designed Ankyrin Repeat Protein With Fo... [more]
E31.270e-525.17ubiquitin-protein ligase MIB2-like n=1 Tax=Asteria... [more]
Uncharacterized3.820e-541.54protein n=1 Tax=Sphaeramia orbicularis TaxID=37576... [more]
Ankyrin4.710e-549.02repeat domain 13B n=1 Tax=Esox lucius TaxID=8010 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7667contigE_fasciculatus_S2_contig7667:1293..4206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score309.3
Seed ortholog evalue1.5e-81
Seed eggNOG ortholog2880.D7FZ90
Model size672
KEGG koko:K15261
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
EC2.4.2.30
Cds size672
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842428.9938235-CDS-E_fasciculatus_S2_contig7667:1292..13451696842428.9938235-CDS-E_fasciculatus_S2_contig7667:1292..1345Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7667 1293..1345 -
1696842429.0106134-CDS-E_fasciculatus_S2_contig7667:1700..19181696842429.0106134-CDS-E_fasciculatus_S2_contig7667:1700..1918Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7667 1701..1918 -
1696842429.0213408-CDS-E_fasciculatus_S2_contig7667:2402..25021696842429.0213408-CDS-E_fasciculatus_S2_contig7667:2402..2502Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7667 2403..2502 -
1696842429.0335064-CDS-E_fasciculatus_S2_contig7667:2974..31441696842429.0335064-CDS-E_fasciculatus_S2_contig7667:2974..3144Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7667 2975..3144 -
1696842429.0450149-CDS-E_fasciculatus_S2_contig7667:4075..42061696842429.0450149-CDS-E_fasciculatus_S2_contig7667:4075..4206Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7667 4076..4206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7667.15836.1prot_E_fasciculatus_S2_contig7667.15836.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7667 1293..4206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7667.15836.1

>prot_E_fasciculatus_S2_contig7667.15836.1 ID=prot_E_fasciculatus_S2_contig7667.15836.1|Name=mRNA_E_fasciculatus_S2_contig7667.15836.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=224bp
MVNLHDLANKGDLEGVRKFLAKSAAKINNTDKAGQTPLHLAAKGGHVEVC
RELLASVASVDIEDAKHHTPLLLAVASNKAKVAQVLCEAGASTTVGMETS
DGRSPLHIAANKGFVECAEVLLQHGAPIDTSRNKWGSLPEEDCVVSEIRT
LIAAARQERDAAGPGAGATSSSPYNPYAASAPPPTGERKEGVGYHPGCSS
PEAPPSYHESVSPSQITGAEGNV*
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mRNA from alignment at E_fasciculatus_S2_contig7667:1293..4206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7667.15836.1 ID=mRNA_E_fasciculatus_S2_contig7667.15836.1|Name=mRNA_E_fasciculatus_S2_contig7667.15836.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2914bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7667:1293..4206- (Ectocarpus fasciculatus EfasUO2)
ATGGTCAACTTGCATGATCTGGCCAATAAGGGAGACTTGGAGGGAGTCCG
CAAGTTCCTGGCAAAATCAGCCGCGAAAATAAACAACACGGACAAGGCAG
GGCAAACGCCTCTCCATCTTGCAGCAAAAGGGTGAGCTAAATAATCAAGT
GCGGCTGCTACACGCACGTCGAAGATACACCGAAGGTTTGTCGCTGACCC
CTGAATAGATAGGACGAACCCGCGCACACTTCAAATTTACCCGCTGGAAC
GAACTCTTTTCGCCGGTCAGCCGGTTAGCGTTGTTGAACTATGTAATTGT
TGACTTTAATAACATACACAGATCGTGGCTGTAGAAGCGGTCTCGGTTTC
TACATGCTGCACGTACAGGTGACCATAGACGCGTCACTGCCGTACACGCA
TCGTTGATGCGCACTATGGAGTATTGCATCCGACTCGTGAACCAGAGGCA
TCCTTCACATTAAAACAGATCAACCGGCGTAGGGCGCTTGTGGAGATTCT
TCACTTATTGTAGACGACACCCCGTGTGCATCTCACACCACCGCGGCAGA
CAAGTTGCCGATTCCGGCCTCTACTGTGTACGGAAGACTAGAGCATCCAT
GACGACGACTTTGCAATCGGACGGACTCCCGTAAAGGTCTCCTGCGTCAG
TCAGCGGCTGTAGCATGTATCACTCAAAGAGTTTCACCCATTTTCATTCT
CGCCCCAGTTGTCAACCGCCAGATTTATGCCACCGTACGTCCTTAGAGCC
TTCGATCGGGGGTCACATACCGCAATTCCGCGGCACATTCCTTGATGCAC
TGTACCAACATGACAAAGGCTCAACTCTTCTCTTGCTCAAACAACGCATG
AAACTCTCCATTGAGTTCGATGTGCCACTTGGATTCTTGGAAAACCCATA
ATTTGCATCCTTTTTCCTGACTAGAAGAAAAAGTCGGCAGCCTGTCCGGG
GCCCTTGGGAGTTTGACCATGTCTATTCGTCCAAGCCGCTTACCTCACAA
AACTTACAATTGTTCGCACGTCGGCGACACACTACACTTGGTGTATGAAC
TCCCTATCGCAGGGGTCATGTTGAGGTCTGTCGGGAACTGCTTGCGTCTG
TCGCGAGCGTGGACATCGAGGACGCCAAACACCACACACCTCTACTGCTC
GCTGTAGCGAGCAATAAAGCCAAGGTGGCACAAGTATTATGCGAAGCAGG
TGCATCGACCACCGTCGGGATGGAAACTTCAGGTAGGTGCGTTTAGAGCA
GCATGCTCCCTCGAGAAGTTTTCGATCTGCGCTCTGGCGTGGAATAGAAC
GGCAGGTAAATGCGCGTGTTGTTGTGCATCGGTACATTGTAACGCGAGAG
AGATACGCGCAGACTTGCTTTGCGTTCGGGCATATAAGGCCAAGCCTGGA
AAAAGCATCCGGTGCAGTTTGATCACCCCCGCGCATTTCGTTCCTGCTTC
GAAACGAGTTTGTCGTCAGACTTCAAAATCATCCTCGTTGTACTAGCCTA
ATGCTCTAGACAAAAGCTTTCGCCAAGCATGCACCGTGGGCTACACCAGA
CCCCCGGTCACAGCCGTTCTTGAGTATCATTCCGGGCTCACCAACCCTGA
CGCTAACTCCCACCTTCGGGACCCCGCGACCCTTTGACAAAAAGACACCC
GAAAATGATCGCACATAAACGCACCAGGCGTTTTTTTACCCGCTTTCTCA
CCAGACGGTCGATCACCACTGCACATCGCGGCGAACAAAGGCTTCGTCGA
GTGTGCAGAAGTCCTGCTGCAGCATGGTGCACCGATTGACACGAGCCGTA
ACAAGTGAGTGGGCGTTGTTCTTGAAGGAGATAATTTGTCACACGCCAGT
TACTAGGTAAATATGCTCTTCGCGGCTGCATAGATAAGTCTGCACTGTCT
GCGTGGATATCATCGAAGATATGGCATACAGAGTGGTAAATTCGCCCGTT
CGTGGACACCACATCGGAAGAATCACATCGGAACCACCCCGCTGGACTGT
ATCCTTCTCTATCGCGCCTGTACTGGACACGTCTAGCCTACCCCCCCTCC
CATCCAATGCCACACCGGTTAACATGTTGTCTACCCAAGCTCAACACAAA
ATGACCCTAGTCCTACGTGCATGAACAACCATGAGACAAAACGCGTGCAC
ACTACACCCTTCTCTGCGTACCAGCGCACTTGTTCCAAGCACCACCGACA
ACGCTGGGACATATCGCGATCCACCATTCGAAAAAACATTATATTTCTCC
CGCTGATGAAGACGAGATCGTTTTCGGCCGGATGCCAGGTGGGGTAGCCT
CCCCGAGGAAGACTGCGTGGTGTCCGAAATACGTACCCTGATCGCGGCGG
CACGCCAAGAGCGCGATGCCGCTGGTCCCGGTGCCGGTGCTACTAGCAGC
TCTCCTTACAACCCGTACGCGGCGTCGGCGCCGCCACCAACGGGAGAGCG
GAAGGAGGGAGTCGGCTATCATCCGGGTTGTTCTTCCCCAGAGGCTCCGC
CGTCGTGTGAGTGAGGATCTTCACAAGGGGGGGGTAACACCGTTGGTGGA
ACTAACACCATGCTTTTGGTTGGATTAGAAGTAAGTGGTGTCTCTCCGGA
CAACAGAGCTTGGTGTTGTTCGCGTGGACCAGCTGTAGAACTCGGACTTC
ATTCCCAGTCGATTTTATGACGGTTGGTTGTGCTCGCCATGCAGCGAACG
TCGTTGGCGTTAAATGGTATCGAAACTACTAGAAGATGTATGCATTAATT
ATTGCCTCAGGAAGAACGTCACGTATTTTCGGTTCTCATAAGCGACACGA
TCTGCACGCGCTCGACCGTTTTCCGCTCGATGAATTTTGAACGCACGCGC
CGGGGGCACAGACCACGAGTCTGTCAGCCCTAGCCAGATCACAGGCGCGG
AGGGAAATGTGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7667:1293..4206-

>mRNA_E_fasciculatus_S2_contig7667.15836.1 ID=mRNA_E_fasciculatus_S2_contig7667.15836.1|Name=mRNA_E_fasciculatus_S2_contig7667.15836.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=672bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7667:1293..4206- (Ectocarpus fasciculatus EfasUO2)
ATGGTCAACTTGCATGATCTGGCCAATAAGGGAGACTTGGAGGGAGTCCG
CAAGTTCCTGGCAAAATCAGCCGCGAAAATAAACAACACGGACAAGGCAG
GGCAAACGCCTCTCCATCTTGCAGCAAAAGGGGGTCATGTTGAGGTCTGT
CGGGAACTGCTTGCGTCTGTCGCGAGCGTGGACATCGAGGACGCCAAACA
CCACACACCTCTACTGCTCGCTGTAGCGAGCAATAAAGCCAAGGTGGCAC
AAGTATTATGCGAAGCAGGTGCATCGACCACCGTCGGGATGGAAACTTCA
GACGGTCGATCACCACTGCACATCGCGGCGAACAAAGGCTTCGTCGAGTG
TGCAGAAGTCCTGCTGCAGCATGGTGCACCGATTGACACGAGCCGTAACA
AGTGGGGTAGCCTCCCCGAGGAAGACTGCGTGGTGTCCGAAATACGTACC
CTGATCGCGGCGGCACGCCAAGAGCGCGATGCCGCTGGTCCCGGTGCCGG
TGCTACTAGCAGCTCTCCTTACAACCCGTACGCGGCGTCGGCGCCGCCAC
CAACGGGAGAGCGGAAGGAGGGAGTCGGCTATCATCCGGGTTGTTCTTCC
CCAGAGGCTCCGCCGTCGTACCACGAGTCTGTCAGCCCTAGCCAGATCAC
AGGCGCGGAGGGAAATGTGTAG
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