mRNA_E_fasciculatus_S2_contig7660.15832.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7660.15832.1
Unique NamemRNA_E_fasciculatus_S2_contig7660.15832.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 514 bits (1325), Expect = 2.510e-177
Identity = 254/313 (81.15%), Postives = 268/313 (85.62%), Query Frame = 1 
Query:    1 LEALELFKRVRSLGAYPPPTLCSLLVQVLAAEGMLEEAEEQFADMLKYGMLPSESCATMVIRLRVQRGKLAEAMEVLAIMEGREYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDSLTQLADHLLDGVSKTLIYPSAPTVKALVEGWNAKWTSVSEQGTCTTCGEILQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGWFANWFSSVKDPPTAIIDGPNVGFMNQNFEGGGFSLTQASSSQSRAAVDWMAEHLKSKGERVLITMPWTYCKDDNFPVR 939
            LEALE FKR+RSLGAYPPPTLCSLLVQ+LAAEGMLEEAEEQFADMLKYGML                      MEVLA+MEGREYQ+KF RPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSI PKESFLLDLIEG+A N + SSRDSL QLADHLLDG+SKTLIYPSAPTVK LVEGWNAKWT VSEQGTCTTCGE+LQGTRLTPEDRARMRSSIV IAAQNGAREVQR+ WFANWF S++DPPTAIIDGPNVGFMNQNF+ GGFSLTQ         VDW+AEHLKSKGERVLITMPW YCKDDNFP+R
Sbjct:  285 LEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQKKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIAKNHQVSSRDSLAQLADHLLDGMSKTLIYPSAPTVKTLVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVRIAAQNGAREVQRLSWFANWFCSLEDPPTAIIDGPNVGFMNQNFKEGGFSLTQ---------VDWLAEHLKSKGERVLITMPWYYCKDDNFPMR 588
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 452 bits (1164), Expect = 6.000e-158
Identity = 220/254 (86.61%), Postives = 233/254 (91.73%), Query Frame = 1 
Query:  196 QRGKLAEAMEVLAIMEGREYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDSLTQLADHLLDGVSKTLIYPSAPTVKALVEGWNAKWTSVSEQGTCTTCGEILQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGWFANWFSSVKDPPTAIIDGPNVGFMNQNFEGGGFSLTQASSSQSRAA------VDWMAEHLKSKGERVLITMPWTYCKDDNFPVR 939
            QRGKLAEAMEVLA+MEGREYQQKF RPRFRSYQPVICELLRRGEMDGVMQLW+HM+WHSI PKESFLLDLIEG+ANN  ASSR+SLTQLADHLLDG+SKTLIYPSAPTVKALVEGWNAKWT VSEQGTCTTCGE+LQGTRLTPEDRARMRSSIVHIAAQNGAR VQR+ WFANWF S++DPPTAIIDGPNVGFMNQNF+GGG S TQA SSQSRAA      VDW+AEHL SKGERVLITMPW YCK DN P+R
Sbjct:   10 QRGKLAEAMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWQHMKWHSIRPKESFLLDLIEGIANNHHASSRNSLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGARAVQRLSWFANWFCSLEDPPTAIIDGPNVGFMNQNFKGGGLSFTQARSSQSRAACYLISRVDWLAEHLNSKGERVLITMPWYYCKADNIPMR 263
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BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE99_AURAN)

HSP 1 Score: 107 bits (268), Expect = 7.750e-22
Identity = 90/333 (27.03%), Postives = 143/333 (42.94%), Query Frame = 1 
Query:  157 SESCATMVIRLRVQRGKLAEAMEVLAI-MEGREYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANN----------RRASSRDSLTQLADHLLDGVSKTLIYPSAPTVKALVEGWNAKWTSVSEQGTCTTCGEILQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGWFANWFSSVKDPPTAIIDGPNVGFMNQNFEGGGFSLTQASSSQSRAAVDWMAEHLKSKGERVLITMPWTYCKDDNFPVRGAGKSRKYAPKRS---WTPI------ETAMVQKWVDNEWLVLLEG--FDDLYWMYATVRRE 1089
            +E+  T + R  V  G L +A++V+A  +E          P+ R+Y P++  L     +     +W  M    + P +   + L+E +A +          R  ++ D     A HL    +     P A T +A         T+V + GTC   G  L    L   +RA+ R  ++ +A     R+ + +  F  W        TA++DGPNV ++NQNFE G F + Q         +  +A HL++ G  VL+ +P  YC+     V    K R  A  R     TP+      E A ++ W +   L ++     DDLYWM ATV R+
Sbjct:  521 NEASYTALARSHVAAGALDDALDVVATRLEDAS-------PKLRTYAPLVAALCAADRVRDARTVWAAMAAGGVAPTDELYVALLEALARSGDAAGCAACLRERAAADDAGLAAAHLTRVSAALRSLPDA-TCEA---------TTVDDDGTCRVSGRTLPTGGLDGRERAQFRERLLDVANATSERDRRELAAFGAWLEDHPYAFTAVLDGPNVAYLNQNFEHGKFRVRQ---------LQAVAGHLEAAGHVVLVVLPAKYCE---AVVPNHSKRRPRAAARDEPGGTPLQELEDSELAAIKAWAERGALYVVPRGCHDDLYWMLATVSRD 824
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Ribonuclease (P (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AP88_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 2.570e-20
Identity = 93/341 (27.27%), Postives = 159/341 (46.63%), Query Frame = 1 
Query:  103 LEEAEEQFADMLKYGMLPSESCATMVIRLRVQRGKLAEAMEVL-AIMEGREYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIL--PKESFLLDLIEGVANNRRASSRDSLTQLADHLLDGVSKTLIYPSAPTVKALVEGWN---AKWTSVSEQG-----TCTTCGEILQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGWFANWFSSVKDPPTAIIDGPNVGFMNQNFEGGGFSLTQASSSQSRAAVDWMAEHLKSKGERVLITMPWTYCKDDNFPVRGAGKSRKYAPKRSWTPIET--AMVQKWVDNEWLVLLEG--FDDLYWMYATV 1080
            L+  +  FA+ L+ G + +E+    ++R +V  G  A A   L  +++   Y  K      R+  P++      G+    M++W  ++   ++  P+E   +  + G     RA +   L +L   LL G   T    +   +++ ++ W    A+   V E+G     TC+ CG  LQ  RL       +R+ ++  AA+  +   +++  F  W    ++P   +IDGPNV + NQNF GGGFS  Q         +D +  HL S+G+RVL+ +P  Y       + G   +   +P+R  T  E   A+V+KW ++  L       +DD YWMYA+V
Sbjct:   24 LQVVQGLFAE-LQAGGVENEASYAALLRAQVHSGDRAAAAATLHQLLKDGTYPVKL-----RTCAPLLLAACEAGDHLRAMRIWASVQQRGVIFTPREYGAMLRMLG-----RAGAGRQLWRLLGKLL-GEHPTPDSETIADIRSALKSWTDAVAEQPVVVEEGHASDGTCSCCGSALQLMRLDSAQCEAVRAVLLQRAAERSSSASRKMLAFDRWLQK-QEPFDYLIDGPNVAYYNQNFNGGGFSYRQ---------LDTLLRHLLSRGKRVLLLLPTKY-------LNGEIPNHTCSPERYTTVSEEDRALVRKWREDRLLFECATGLYDDWYWMYASV 335
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA0_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 8.060e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  931 PVRGAGKSRKYAPKRSWTPIETAMVQKWVDNEWLVLLEGFDDLYWMYATVRRE 1089
            P R   K+RK++PKRSWTPIET +VQKWV+N+WL ++EG DDLYWMYATV R+
Sbjct:    3 PSRRGRKARKFSPKRSWTPIETEIVQKWVENQWLAMVEGLDDLYWMYATVARD 55
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.190e-16
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:  931 PVRGAGKSRKYAPKRSWTPIETAMVQKWVDNEWLVLLEGFDDLYWMYATVRRE 1089
            P R   K+RK++PKRSWTP+ET +VQKWV+N+WL+++EG DDLYWMYATV R+
Sbjct:    3 PSRRGEKARKFSPKRSWTPMETEIVQKWVNNQWLMMVEGLDDLYWMYATVARD 55
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3P8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.750e-16
Identity = 89/374 (23.80%), Postives = 162/374 (43.32%), Query Frame = 1 
Query:    7 ALELFKRVRSLGAYPPPTLCSLLVQVLAAEGMLEEAEEQFADMLKYGMLPSESCATMVIRLRVQRGKLAEAMEVLAIMEGREYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDSLTQLADHLLDGVSKTLIYPSAPTVKALVEGWNAKWTSVSEQGTCTTCGEILQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGWFANWFSSVKDPP---TAIIDGPNVGFMNQNFEGGGFSLTQASSSQSRAAVDWMAEHLKSKGERVLITMPWTYCKDDNFPVRGAGKSRKYAPKRSWTPIETAMVQKWVDNEWLVLLEGF--------------DDLYWMYAT 1077
            AL+ ++  R   A  P    + ++  LA     +     F DM    + P+E+  T + +     G   +A+E  A+  G ++      P+ R+Y PV+  L   G ++  +++W+ M   S+ P    ++  +  + ++   ++   L  L D  L+      I   A    + +   N K  ++            L G  LT  + A +R  +   A+Q+  R+   +  F  +   ++D P   TA++DGPNV ++NQN++GG F   Q      +A VD     L+++G RVL+T+P  YC+             K+A     TP+ +   ++ ++ E + LLE +              DDLYW+  T
Sbjct:   59 ALQAYQHARRARARLPTNCYNGILNGLAKRADGDACASVFEDMRVLSVEPTEASRTALAKAHALNGDGDKALE--ALRGGTDWT-----PKLRTYAPVLNCLFSSGRVEDALRVWREMVSRSVRPSGELIVAAVAAIDDDHTLAT--FLGSLGDVCLNRKQLEAIQQRAGG--SFMHVTNGKLGNLQ-----------LPGAGLTTTELASVRQGLFDAASQSSERDKNELEKFDGF---LRDHPWRFTAVVDGPNVAYLNQNYDGGRFRPLQI-----KAVVDV----LEARGHRVLVTLPAKYCE------AVVPNHSKFA-----TPLPSQEAEQALEAEEIALLEEWRMRGMLYAVPRACHDDLYWILGT 387
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Ribonuclease (P n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812HKI5_9DINO)

HSP 1 Score: 89.4 bits (220), Expect = 8.400e-16
Identity = 86/372 (23.12%), Postives = 146/372 (39.25%), Query Frame = 1 
Query:  145 GMLPSESCATMVIRLRVQRGKLAEAMEVLAIMEGREYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDSLTQLADHL-----------------LDGVS--KTLIYPSAPTVKALVEGWNAKWTSVSEQGTCTTCGEILQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGWFANWFSSVKDPPTAIIDGPNVGFMNQNFEGGGFSLTQASSSQSRAAVDWMAEHLKSKGERVLITMPWTYCKDD---------------------------------------NFPVRGAGKSRKYAPKRSWTPIETAMVQKWVDNEWLVLL--EGFDDLYWMYATV 1080
            G  P ES  T ++R+    G   +A+ ++A     E Q K  +PR R+   V+ +    G+      LW  +    + P++S    ++            + L QL D L                 ++GV   ++L  P A   +     W+  WTS+SE G C   G  LQ   ++ E+ A +   ++ +A        +R   F  W    + P   +IDG NVGF NQN EGG F  +Q         +D + + L+  G RVL+ +   + + D                                        +P     ++ + AP  S TP+    +++W ++E LV +  +  DD YW++A +
Sbjct:   89 GGKPQESAVTSMVRVCCACGAQEKALNLVA-----EAQAKGVKPRLRTLSAVLLQASEAGDRSTCESLWARLPSLGLEPQDSEFAIMLR-TFRGEPLRQYELLRQLIDELPLPSDPPLIDEIGRVFGVEGVQALRSLDPPEAVGREEHGNRWHVGWTSLSEDGRCALSGHRLQALDISNEEEALLEKMVIKLAVDGVKNSGKRFKRFKKWLEE-QPPFDIVIDGANVGFNNQNREGGLFQYSQ---------IDAVIQKLRETGSRVLLVLHPKWLRADADRTVTKRKKRKLDQINLESGLGSSDESPEDHEDGEPEIQYPFDPITEAERTAP--SGTPL--GFIRQWKESECLVRVPAKDCDDWYWLFAAL 440
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JFA1_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 9.170e-16
Identity = 59/179 (32.96%), Postives = 85/179 (47.49%), Query Frame = 1 
Query:  559 SVSEQGTCTTCGEILQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGWFANWFSSVKDPPTAIIDGPNVGFMNQNFEGGGFSLTQASSSQSRAAVDWMAEHLKSKGERVLITMPWTYCKDDNFP---VRGAGKSRKYAPKRSWTPIETAMVQKW--VDNEWLVLLEGFDDLYWMYATV 1080
            +VS+ G C++CG  L+   LT    + M S+++  A + G+ + + +  F  W        T I+DG NV + NQNFEGGGFS  Q        A  W+ E   S GE  LI +P  Y  +D  P    RG     ++ P     P +  ++Q W    N W+      DD YWMYA +
Sbjct:   23 AVSQSGYCSSCGTKLEAVPLTSAQYSEMSSALLSAARRAGSAQYEDLLHFGEWVKGRHY--TYIVDGANVAYCNQNFEGGGFSFEQI-----ELACRWLRE--MSDGEPPLIVLPSEYLSEDTIPNHTCRG-----RHGPSVI-QPHQWELIQHWRHSQNLWVSEPGSSDDWYWMYAAI 186
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Match: Ribonuclease (P n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMM7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.480e-15
Identity = 88/384 (22.92%), Postives = 161/384 (41.93%), Query Frame = 1 
Query:    7 ALELFKRVRSLGAYPPPTLCSLLVQVLA-AE---GMLEEAEEQFADMLKYGM----LPSESCATMVIRLRVQRGKLAEAMEVLAIMEGREYQQKFHRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDSLTQLADHLLDGVSKTLIYPSAPTVKALVEGW---------NAKWT----SVSEQGTCTTCGEILQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGW--FANWFSSVKDPPTAIIDGPNVGFMNQNFEGGGFSLTQASSSQSRAAVDWMAEHLKSKGERVLITMPWTYCKDDNFPVRGAGKSRKYAPKRSWTPIETAMVQKWVDNEWLVLLE--GFDDLYWMYATVR 1083
            ALEL++R+++ G    P +  +++ V + AE        A + + DM + G     +  ES  + +I+L  +        E+LA ME          P+ R++ P++      G +D  + + + M  H++ P E+  + L+       R   +    +     LD   + ++ P  P+   +++ W           KWT    +VS+ G C+  G+ L+   L P     +   +  +   +  R  Q   W  F  W  +   P   ++D  NVG+ NQNF+GGGFS  Q +S         M EH +++ ++VL+ +     +D+  P                 P   ++V +W     +   +    DD YW+YA V+
Sbjct:  365 ALELYERMKTEGVNVSPYMYHVVINVCSKAEDPAAFKGGAFKVYEDMKQRGSASKHMVEESTYSALIKLCSKDQDFEACTELLAAMEAETVA-----PKLRTFTPLLLAYSEVGNLDKCVWVHEKMVSHALEPTETDYVALL-------RVCVKTGNAERFYAFLDAFIEDIMQPG-PSAWEVLKDWFSSEAAQVDGRKWTISEGTVSKDGVCSVTGDQLRSLELAPAVEKALLDKVEQLVRTDEKRIAQ---WDAFKQWLEA-SGPFDVVVDAANVGYFNQNFDGGGFSYEQIAS---------MVEHYEAQSKKVLLLLHQRRTEDEQVP-----------------PEHRSLVAQWRARGVMYNCQTGNNDDWYWLYAAVK 705
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7660.15832.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PPR_long2.510e-17781.15domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized6.000e-15886.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.750e-2227.03protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Ribonuclease2.570e-2027.27P (Fragment) n=1 Tax=Haptolina ericina TaxID=15617... [more]
Uncharacterized8.060e-1767.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.190e-1666.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.750e-1623.80protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Ribonuclease8.400e-1623.12P n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812HKI5... [more]
Hypothetical9.170e-1632.96protein n=1 Tax=Calcidiscus leptoporus TaxID=12754... [more]
Ribonuclease3.480e-1522.92P n=1 Tax=Nothophytophthora sp. Chile5 TaxID=24834... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7660contigE_fasciculatus_S2_contig7660:406..6728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score514.2
Seed ortholog evalue4.9e-143
Seed eggNOG ortholog2880.D7FNA1
Model size1089
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
Ec32 ortholog descriptionZc3h12a-like Ribonuclease NYN domain protein
Ec32 orthologEc-15_003520.1
Cds size1089
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7660.15832.1prot_E_fasciculatus_S2_contig7660.15832.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7660 406..6728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842428.6488082-CDS-E_fasciculatus_S2_contig7660:405..5591696842428.6488082-CDS-E_fasciculatus_S2_contig7660:405..559Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7660 406..559 -
1696842428.6612847-CDS-E_fasciculatus_S2_contig7660:1801..18931696842428.6612847-CDS-E_fasciculatus_S2_contig7660:1801..1893Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7660 1802..1893 -
1696842428.670969-CDS-E_fasciculatus_S2_contig7660:2224..23801696842428.670969-CDS-E_fasciculatus_S2_contig7660:2224..2380Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7660 2225..2380 -
1696842428.6854906-CDS-E_fasciculatus_S2_contig7660:3543..36931696842428.6854906-CDS-E_fasciculatus_S2_contig7660:3543..3693Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7660 3544..3693 -
1696842428.700338-CDS-E_fasciculatus_S2_contig7660:4145..42981696842428.700338-CDS-E_fasciculatus_S2_contig7660:4145..4298Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7660 4146..4298 -
1696842428.7110064-CDS-E_fasciculatus_S2_contig7660:4825..50111696842428.7110064-CDS-E_fasciculatus_S2_contig7660:4825..5011Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7660 4826..5011 -
1696842428.7208385-CDS-E_fasciculatus_S2_contig7660:6530..67281696842428.7208385-CDS-E_fasciculatus_S2_contig7660:6530..6728Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7660 6531..6728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7660.15832.1

>prot_E_fasciculatus_S2_contig7660.15832.1 ID=prot_E_fasciculatus_S2_contig7660.15832.1|Name=mRNA_E_fasciculatus_S2_contig7660.15832.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=363bp
LEALELFKRVRSLGAYPPPTLCSLLVQVLAAEGMLEEAEEQFADMLKYGM
LPSESCATMVIRLRVQRGKLAEAMEVLAIMEGREYQQKFHRPRFRSYQPV
ICELLRRGEMDGVMQLWKHMEWHSILPKESFLLDLIEGVANNRRASSRDS
LTQLADHLLDGVSKTLIYPSAPTVKALVEGWNAKWTSVSEQGTCTTCGEI
LQGTRLTPEDRARMRSSIVHIAAQNGAREVQRVGWFANWFSSVKDPPTAI
IDGPNVGFMNQNFEGGGFSLTQASSSQSRAAVDWMAEHLKSKGERVLITM
PWTYCKDDNFPVRGAGKSRKYAPKRSWTPIETAMVQKWVDNEWLVLLEGF
DDLYWMYATVRRE
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mRNA from alignment at E_fasciculatus_S2_contig7660:406..6728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7660.15832.1 ID=mRNA_E_fasciculatus_S2_contig7660.15832.1|Name=mRNA_E_fasciculatus_S2_contig7660.15832.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6323bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7660:406..6728- (Ectocarpus fasciculatus EfasUO2)
TTGGAAGCGCTGGAGCTCTTCAAGCGCGTCCGCAGCCTGGGCGCGTACCC
GCCACCCACGCTGTGCAGCCTTCTGGTGCAGGTCCTCGCGGCGGAGGGTA
TGCTGGAGGAGGCGGAGGAGCAGTTCGCCGACATGCTCAAGTATGGCATG
CTACCCTCTGAGTCTTGCGCGACCATGGTCATCCGTCTTCGCGTGCAGGT
GAAGAATCACCCCCCCGCCCCTTCGCTTCGCGCTTGGTGATGTGCAAAAT
AAGCCTGGGCCGGCCAATGCCCGGCATATGTATCGCTCTGTCCCGGGTTT
GTGGGGATACGAAGAGGTCGACGGCCTAACGACTACGGCGTGCACCGCCG
TGAGTAGACGTGGTACTGTCACCAGGTTCGCCCTTGTGAAACGTGGCCTG
GGCCGGCGAAAACCGGCATGTCGCTCAGTCCCGGCATCGTAAGAGGGCTG
CGACGTCTGTGGTCTTTGCATGAGTACACACACACCCATGGTACGTATGT
CTGGGCGTGATGAGTTTCTGTGTGCTCGGGTACAGCGGCCCCCAAGCAAC
CATGACGTCATAGCGGTTAGGTGGCCCTTGGCGACCCTGGGGTTGTTCGT
TCTCTGCTTGTTCGTGAAGGTTTGTCTGTCTTGGCGCACACGTGACCAAG
CAAATCATGGTGGCTTTCTGTCTTGACATGATGCAGGTGACCCCCGCGAG
CACCCATGATGGTGATCTTTCCTAAGCGTGAGGGTGACCCCAAGCAACCA
CACGAGGGTTGTTACTTTGTCTGAGCGCACCGCTGACCCCAAGCAACGAT
GTTGCCTGCATGCAGTCATGTGGGCCTCTGGTGTAGTTTGGCTGTTCTCC
GCACTAGGTCGTGGGCATGGAGGTTCCGTGTGCGATGTTGGCGGGCCGCC
GGGTGTGCAGTGGATCGGACGAAAACGCTGTCACTTCCACACAGCAGCAA
ACAGCACTACAGCGTACGAAACCAACCACGTTGGGTGTCTCTTAGCTCAC
AGCTCAGTCCAAGAAACCACGGCAGTTGGCTGTATCAGCGCATGGTGGCC
CGAAGAAACCCCTATGGTCTTCCGTCTTAGCGTGTACCGGTGAACCCAGG
CAAAGCATAGGCTTGTTACTCGGTAGGCTTGATTTTGTGCTGTCAATTTG
GGTTATTATAGTTGAAAAAAGGTTAAGGGTATCGAACTCGCCTACCGAGC
ACCGTACGGACACTCGTACAGCGCACAGCACGGGTTGTGATGTTCCTTGG
CTGGGTTCTGTTCATATGTTCTGCGGACACAGCGAGATGACAGTGAAGAA
CACGCTGCATGTTTGGAAAGATTTTTCTCCCTTTCTCACACCGCCTCCGG
CTTGTCGAAAACCCGTTGTTGTTGACTGATTTGATTCGATAGCGGACAAA
GTCTCGCGTAAGCGTTGGGCCGACCGAACTGGCATTGGCAGGGGAACGGA
ACAATGACCACAACGTATGCGCCATATACAGAGTAGAGGGCCCTCAATAA
CGCGGGTATGGGCCCGCGGCGCAATCCAGAGGTACCGGCGCTACGCAATG
TACAGAATGACTCGGTGATTCAGTCCGTGCCCAGCAATTTCACCGGCGTT
GTACAGGACCACGGGCGCTAATCAACCGGCGTTATTGTCGCCCCCCCACT
CTGCTGTATCCGTTTCAACCCGACATCTGTTCGTGGGCTGGGCTGGGCTG
GGCTGGACTCATGGCAGAGAGGGAAGCTGGCCGAGGCAATGGAGGTCTTG
GCCATTATGGAGGGGAGGGAGTACCAGCAGAAGTTCCACCGCCCCCGCTT
CCGTTCGTACCAGCCGGTCATCTGCGAGCTTCTGCGGAGGGGGGAGATGG
ACGGGGTGATGCAGCTGTGGAAGCACATGGAGTGGCATAGCATCCTCCCC
AAGGTGTGTGTGTTGGTACCCATCTATTATTGCCCCGGTTTACAGCTCAC
AGCCTTTCGGCGTGTATCTACCTGACGTATCAGCCGGGGTCACTCAAGAG
GAAGGTCACACATCGGATTTTTTTCATTTTTTGTTCTTGTTTTGTTGCCC
CACCTTTGTTTCCCCTTGCGGTTCTTCGGCGAATCGGGGCGAAAGATTCA
GCGTGGCGCAGCCTATCGTTAGGATGATACAATCTACCACTACGCTTGTT
GTGTGTGCTTTCGTTCGTCCCAAAACGTTAAAGTTGTTTGTTAATTCAGA
GCGTTATGTTTAATTTGGTGACGGAAGTTGCTCTTGCTCCGTTCTTGACG
CATCCTGTATTTCTTTTACCGTTTTCCTGCTTTTTTATTATTTTTTTTCT
GGTGCCGAAGTCGTTGCCTTAGAAGTAAGTTTCCTTCACCCGTTTCCGCG
AGCCGTGCTCTTGCTCCGCACTTGGTTGCGTTGAACCCCATTTTCCTCGT
TCACGTTTATTTTTGTTTTCTCCGTTGCAGGAGTCATTCTTGCTGGACCT
GATCGAGGGGGTCGCAAACAACCGCCGCGCCTCCTCCAGAGACTCCCTCA
CGCAGCTCGCGGACCACCTCCTGGACGGGGTGTCCAAGACCCTCATTTAC
CCCTCCGCACCCACCGTCAAGGCTCTCGTAGAGGTATGAATGGTGACCCC
GCTCCGTACAGGCCGCCGTTGCTCTGGTTGTGTGAGAGCCCCCCAGGAAC
GATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTGAGTCCCCTCGA
AGACGCGTGGTCAATGGTCTAACCGCGAAGGCATGCAAAACATGAGAGTA
CGCCCCCCCCCCCCGTCGCAGCTACCTCCTGAACCGTGTTTCCTGGTGCT
TGTAGTGGAGTTTGGGAGGCGAGGAGGGCAGGCGGCCATGCCCTACCACC
CTGGTGCATGTTATCAATCGCCGCCCTCTTCCGCTTCTAGTAGTCATCGT
GCAAGCCCCAACATTTCCACACAGTATGCTTTACATGATGGTTTAGGGTG
GAACGCGAAGTGGACGGACGTGTCGGAGCATGCACAGGGCACGGAGGCTG
ACCCCCCATAATGTATTCACTCGATGGTGACTTAGGGGTGGAACGCGAAG
TGGACGAGCGTGTCGGAGCAGGGCACATGCACCACGTGCGGCGAGATACT
CCAGGGCACGAGGCTAACCCCGGAGGACCGAGCGAGGATGAGGAGCTCGA
TCGTGCACATCGCTGCCCAGAATGGGGCGAGAGAGGTACGTGCGCCTCTG
CCCCCGGCCAGCGTAGTGCCGTGGCTAATCGGCACGCCAGCTTATCGTTT
TCTGTTTCGATTTTTTTATTTTGAAGATATGGATGCAATCACAGAAGGAA
TTACCCGTTCGAGCTAATACCACAACAGTGAAAGGGTGAGACCTTATTTA
TTTATTTATTTACAAGGTCTCCCTTTCGGGACGTGGGTGTCAACCCTCCC
TCAGGTGACGCAAGACCACGTGCACATTGCCCGAAGAGGGACTGTGTGTC
TTTTACAACGCTCGCATTTCCGCACAACACGACGTTGTTATTCTACACTG
GAGCCAGCTCGAGCGGACAATATTTTGCCGGCGAAAAAATCAGACTTCCA
TGATGTCTTTGATTGATGATGGCAAGTTTCCGATGAAAACCGAATTTGAA
GCCGAAACAGCACCACAACTAGAACACCTTCAACACTGCGGATGCATGCT
CTCAGACTTGTCTACACTGGCCCGATGCGAAGTTAGTAAACGTAGGTTCT
GCTGTTGGACAAAACGATGACACGAAGAGTCACAGCCATGAATCAGCGAA
TGGATGAATGAATGAAAGTGAAGAGGCAAGAGGCAAGCATTTCATACCGT
CGTATTTGATGGGTTTTGATTGGTTTCCGAATAGGTTCACCAGGCCTTGT
CAGCGCGGAACGCGTCCCCGGGGTTTTGAGCCAGTTTGGCAACTTTGGCC
GTCGACCACACGCGCCACAGAGGTCTACCGAGCTCCGGGCACGGGCGTTA
ATGTACCGACGAGCCTCTTGCGTGCCCCTGAGAAGGAATCGCGAGAAAAA
ACTCGCTGCCGCGAGAGAAAGAAATGCCGAAGCATGAAAAGTGACCTAAT
CTTACATGTACATATTTTTCTTTTTGTTTTATTTACTTCGGCTTAGGTGC
GCGGCTTGGATCTGGATTCCCATGCGCATGCTGTTTTCCGTGCCGAGGTA
GATTGCTCACCGTGGAAAAAGCAGATTATATTCGTTCGGAGTGCACGGCG
TGGGTCTACAAGGTTCGGTTGTTTTTTTGTTTTTTGTTCCGGGGTGTGTG
TCGCTTCTTCCTCCATCATGTGTTGTTGCCATTTTTTCTTGCCCGAACAA
AACAAACTCATTTCCATCCATCATTTGGTTTGTTATTTCGGCCGTCAGGT
CCAGCGGGTGGGGTGGTTCGCCAATTGGTTCTCTTCCGTGAAAGACCCTC
CTACAGCCATCATCGACGGCCCGAACGTCGGCTTCATGAACCAGAACTTC
GAGGGCGGCGGGTTTTCACTCACCCAGGCAAGCTCCTCTCAATCTCGGGC
AGCTGTGTTTCTTTAGTCGGGTGTTGAGTGATTGTTGATGGGGCTGTTTC
ACTGCAACGGATTTTTTCGGAGTGGGCTCATGAGAGCTCAGCGTCAAGGC
ATATGCTGTAATATGAAAAAATAGCAGGCAACAGGACCAGCCGTGCACAT
GAGACGGACTACCAGCTAGCTGCCTGTTGTGACGTTTATTTCCCAAGCGC
ACACAGGTGACTGACGTGTTTGAAGGGCCTAGCGGACCTCAACGAGCCAA
AAAGAAGAACAATCGCAAACATGTGTAGTCTCGTTACCTCCCCCCATTAA
AACGCCGATTATCTTGGGTGCTTCACCCGCTCCAGGTCGATTGGATGGCC
GAACACCTGAAGTCCAAGGGGGAGCGTGTCCTCATCACGATGCCGTGGAC
CTATTGCAAGGACGACAATTTCCCGGTGTAAGTGGACCGGAGAAAATAGC
AAGTTTTTTTCACGAAGAACACAACGAACGAAATAAATGATCTGGTTGTG
ACCGACCACAATATATACATTCAAAGTATGTTGTGTACTTATATTAATCG
TTTTTGGGTTTTGGAACAACAAGTCATCTCTTCACAGATAAAAGCCGGTG
GTAGGTTAGCATTGGGTTTTATAGTGCTGTACGGTGACCAGCGTGTTATT
TCTACGGTACACTGAGCAGCCTACATCGACATCTCCCATGTGGCTGACAG
TCTCGACAAGGTTTTTTGTTTTGTGCAATTCGTGATTTGTGTTCTTTCCG
AGAAACCACCCGGCATTCAAGAGTAGGTTTTGGAGTGAACCGAGCTTTTT
TTGAAGTTCACGTGCGATATTTCTCCACATTGTTTTTTGAGTTAGGGCCG
CGAGCATGGAATTGGATTATTCCGCAAGTAGATAAGATGCTCCTTCCATA
CCGTGAGTCGAACCAAGATTGGCGTTGGATTATACCGCAAGTAGATAAGA
TGCTCCTTCCATACCGTGAGTCGAACCAAGATTGGCGTTGGATTATACCC
GTAGAGAGACACGGAACCTATGATGCATCCAGTCCGATGCTTCTGTGCCC
TCCGAGATTGTGTTGGATGGAACCTCACGGTCATGACGATGTTGCGTTTT
TCGCCCATTCCATTCCGTGCAAACTGACGGGACATACCGTATTGGATGGG
AGAGCTGCCTGGCTGGTTGTTGTGGGATCGGGGCGGGTCCCCGGGGTTGT
GTCTTTGCCCCGTACACTACCGTAGTAGTCATGCAGAATAAAATAGGCAT
GACTTGCATCCGTCGAGAGGTACGAATGGTACGATTTTTTTTTCGTGTTG
CAGTTGTTGTTATTTTTTGTACAGCAGCTGTTGTTGCTGTTGCTATCTCT
TGGCCATTTTTGGCCGCCGTGTAGTACCGGCTCTTGACGATGATTATTCC
AGAAGTAGCGGTGATTAATTACCCATCGGTCAACCGGCTAGCGCGGTCGG
TGTTCAAAGAACACACGACCACACACACACACACACACACACATACACAC
ACACAGACACACGAACCTTTTCGTCAGCCGGTTAGCGCGGTCGGTGCTAG
AAACAAAAACACCATGCTTGTTGCAGTCGCGGTTGCTTCACAAACTCGGG
CTACATACCTCATATGTTTGCAGCATGACGCTTTCTTCCGTTTTACCTCG
TGTAAATGTCATCATCCAGACGTGGTGCTGGGAAAAGCCGCAAGTACGCG
CCGAAAAGGTCATGGACACCCATCGAGACCGCGATGGTGCAAAAGTGGGT
CGACAACGAGTGGCTCGTGTTATTGGAAGGCTTTGATGACCTCTATTGGA
TGTACGCCACGGTGAGACGAGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7660:406..6728-

>mRNA_E_fasciculatus_S2_contig7660.15832.1 ID=mRNA_E_fasciculatus_S2_contig7660.15832.1|Name=mRNA_E_fasciculatus_S2_contig7660.15832.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1089bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7660:406..6728- (Ectocarpus fasciculatus EfasUO2)
TTGGAAGCGCTGGAGCTCTTCAAGCGCGTCCGCAGCCTGGGCGCGTACCC
GCCACCCACGCTGTGCAGCCTTCTGGTGCAGGTCCTCGCGGCGGAGGGTA
TGCTGGAGGAGGCGGAGGAGCAGTTCGCCGACATGCTCAAGTATGGCATG
CTACCCTCTGAGTCTTGCGCGACCATGGTCATCCGTCTTCGCGTGCAGAG
AGGGAAGCTGGCCGAGGCAATGGAGGTCTTGGCCATTATGGAGGGGAGGG
AGTACCAGCAGAAGTTCCACCGCCCCCGCTTCCGTTCGTACCAGCCGGTC
ATCTGCGAGCTTCTGCGGAGGGGGGAGATGGACGGGGTGATGCAGCTGTG
GAAGCACATGGAGTGGCATAGCATCCTCCCCAAGGAGTCATTCTTGCTGG
ACCTGATCGAGGGGGTCGCAAACAACCGCCGCGCCTCCTCCAGAGACTCC
CTCACGCAGCTCGCGGACCACCTCCTGGACGGGGTGTCCAAGACCCTCAT
TTACCCCTCCGCACCCACCGTCAAGGCTCTCGTAGAGGGGTGGAACGCGA
AGTGGACGAGCGTGTCGGAGCAGGGCACATGCACCACGTGCGGCGAGATA
CTCCAGGGCACGAGGCTAACCCCGGAGGACCGAGCGAGGATGAGGAGCTC
GATCGTGCACATCGCTGCCCAGAATGGGGCGAGAGAGGTCCAGCGGGTGG
GGTGGTTCGCCAATTGGTTCTCTTCCGTGAAAGACCCTCCTACAGCCATC
ATCGACGGCCCGAACGTCGGCTTCATGAACCAGAACTTCGAGGGCGGCGG
GTTTTCACTCACCCAGGCAAGCTCCTCTCAATCTCGGGCAGCTGTCGATT
GGATGGCCGAACACCTGAAGTCCAAGGGGGAGCGTGTCCTCATCACGATG
CCGTGGACCTATTGCAAGGACGACAATTTCCCGGTACGTGGTGCTGGGAA
AAGCCGCAAGTACGCGCCGAAAAGGTCATGGACACCCATCGAGACCGCGA
TGGTGCAAAAGTGGGTCGACAACGAGTGGCTCGTGTTATTGGAAGGCTTT
GATGACCTCTATTGGATGTACGCCACGGTGAGACGAGAA
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