mRNA_E_fasciculatus_S2_contig766.15830.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig766.15830.1
Unique NamemRNA_E_fasciculatus_S2_contig766.15830.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig766.15830.1 vs.
Match: FCP1 (homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.220e-12
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = 3 
Query:    6 GGGAPGRSSRRASLPPTCXXXXXXXXXAAGEAGGKRARAGCGESTISSETFVGDSTAAAAAAATEMFQE 212
            GG APGRSSRRAS P TC         A GEAGG RARAG GES IS +T VGDSTAAAAAAATEMFQ+
Sbjct:  118 GGDAPGRSSRRASSP-TCPPPGPRVSPA-GEAGGNRARAGFGESMIS-KTAVGDSTAAAAAAATEMFQQ 183
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig766.15830.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
FCP18.220e-1271.01homology domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig766contigE_fasciculatus_S2_contig766:24841..25062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size222
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_008150.1
Cds size219
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842428.523674-UTR-E_fasciculatus_S2_contig766:24840..248431696842428.523674-UTR-E_fasciculatus_S2_contig766:24840..24843Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig766 24841..24843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842428.5416896-CDS-E_fasciculatus_S2_contig766:24843..250621696842428.5416896-CDS-E_fasciculatus_S2_contig766:24843..25062Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig766 24844..25062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig766.15830.1prot_E_fasciculatus_S2_contig766.15830.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig766 24844..25062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig766.15830.1

>prot_E_fasciculatus_S2_contig766.15830.1 ID=prot_E_fasciculatus_S2_contig766.15830.1|Name=mRNA_E_fasciculatus_S2_contig766.15830.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=73bp
MAAVPPADLPAVPRCHRRAHLLGPACRQQQGKRAGREHARVVAKALLAAR
PSWEIAQQQRPLLQRRCSKNKWR
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mRNA from alignment at E_fasciculatus_S2_contig766:24841..25062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig766.15830.1 ID=mRNA_E_fasciculatus_S2_contig766.15830.1|Name=mRNA_E_fasciculatus_S2_contig766.15830.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=222bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig766:24841..25062+ (Ectocarpus fasciculatus EfasUO2)
ATCATGGCGGCGGTGCCCCCGGCCGATCTTCCCGCCGTGCCTCGCTGCCA
CCGACGTGCCCACCTCCTGGGCCCGGCGTGTCGCCAGCAGCAGGGGAAGC
GGGCGGGAAGAGAGCACGCGCGGGTTGTGGCGAAAGCACTATTAGCAGCG
AGACCTTCGTGGGAGATAGCACAGCAGCAGCGGCCGCTGCTGCAACGGAG
ATGTTCCAAGAACAAGTGGAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig766:24841..25062+

>mRNA_E_fasciculatus_S2_contig766.15830.1 ID=mRNA_E_fasciculatus_S2_contig766.15830.1|Name=mRNA_E_fasciculatus_S2_contig766.15830.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig766:24841..25062+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGCGGTGCCCCCGGCCGATCTTCCCGCCGTGCCTCGCTGCCACCG
ACGTGCCCACCTCCTGGGCCCGGCGTGTCGCCAGCAGCAGGGGAAGCGGG
CGGGAAGAGAGCACGCGCGGGTTGTGGCGAAAGCACTATTAGCAGCGAGA
CCTTCGTGGGAGATAGCACAGCAGCAGCGGCCGCTGCTGCAACGGAGATG
TTCCAAGAACAAGTGGAGA
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