mRNA_E_fasciculatus_S2_contig7656.15824.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7656.15824.1
Unique NamemRNA_E_fasciculatus_S2_contig7656.15824.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7656.15824.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK8_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-18
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:  800 LCYHPLVSKATFCKMSKWQHFLHHPAKSRHVRVFLPATGATYTVLLHVSTAPCGWTWSVITTHSTRLLSLLVALRGGNETVADAAEEVVEHVQE 1081
            L Y P +  A + +  +W+       + RHVR FL A G  Y VLLH+S AP  WTWS+I THSTRLLSLL+ALRG NE VA+AA E+V HV E
Sbjct:  270 LLYRPFIKTAIYGRFFQWELICMTQPRCRHVRAFLLAGGMIYAVLLHLSPAPSKWTWSLIVTHSTRLLSLLIALRGDNEGVANAAGEIVAHVPE 363
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7656.15824.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.530e-1854.26protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7656contigE_fasciculatus_S2_contig7656:2153..4771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size2412
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842427.813956-CDS-E_fasciculatus_S2_contig7656:2152..23931696842427.813956-CDS-E_fasciculatus_S2_contig7656:2152..2393Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7656 2153..2393 +
1696842427.8276908-CDS-E_fasciculatus_S2_contig7656:2601..27711696842427.8276908-CDS-E_fasciculatus_S2_contig7656:2601..2771Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7656 2602..2771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842427.8401814-UTR-E_fasciculatus_S2_contig7656:2771..47711696842427.8401814-UTR-E_fasciculatus_S2_contig7656:2771..4771Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7656 2772..4771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7656.15824.1prot_E_fasciculatus_S2_contig7656.15824.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7656 2153..2771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7656.15824.1

>prot_E_fasciculatus_S2_contig7656.15824.1 ID=prot_E_fasciculatus_S2_contig7656.15824.1|Name=mRNA_E_fasciculatus_S2_contig7656.15824.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp
GATSVIIRPLFVLEDVVLYVFVVVRSFFVWSFSGAYSVAMNVHGLSNLPR
PLSSSPRIAAGSSSSPPSPASLARAAPRAPGNRNAWSTLVRIVEGIIAIC
VCVFVLDGSGVNINIPSSLATTLLGFTLSLFLCFSL*
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mRNA from alignment at E_fasciculatus_S2_contig7656:2153..4771+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7656.15824.1 ID=mRNA_E_fasciculatus_S2_contig7656.15824.1|Name=mRNA_E_fasciculatus_S2_contig7656.15824.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2619bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7656:2153..4771+ (Ectocarpus fasciculatus EfasUO2)
GGTGCCACGTCCGTGATTATCAGACCCCTGTTCGTTCTCGAAGACGTTGT
TCTCTACGTCTTCGTGGTCGTGCGGTCCTTCTTCGTCTGGAGTTTCTCTG
GCGCATACAGCGTAGCGATGAACGTCCATGGCTTGTCCAACCTTCCCCGC
CCACTGTCGTCATCTCCCCGTATTGCTGCGGGTTCGTCCTCTTCCCCTCC
GTCGCCTGCGAGTCTGGCACGAGCAGCACCTCGGGCTCCAGGTAACTGCA
GTATTGCGTTGCAGGTCGGTTTATACGTGCTGTAGTAGGGAGGCACGAAG
GTTCTGCTGCGTGCCCAGAAGGAGTTTTGGGCGAATGCAACCCTCTGGTA
CCGCGTAAATGTTGGGTTGTTTCCACACAACAAACGATGCAGAGACAAAA
AAGGCACTACTGAAAGAGTTCAAACCATGGCGCGTGTCACACCCCACAGG
AAATCGCAACGCTTGGAGCACTCTTGTGCGCATCGTGGAAGGCATAATTG
CCATCTGCGTCTGTGTATTTGTGTTGGACGGAAGTGGGGTCAACATCAAC
ATTCCGTCCTCCCTGGCAACAACGTTACTTGGCTTCACGTTGAGTCTTTT
TCTGTGTTTCTCGCTGTAGTGGACGCGCTTTTTCCGAGCTCGATGGCCAG
CTGCAAGACACACACAGTCACTCCTAGTGTTCGATGCGCTTTCCAAGGCT
CGCCGGCTGTGGAGCATATTGTCATCCGTGGACGATAGACGCAGCAATAA
GGAAAGAACCGATCTTGATGGCGTAGACGTTTCCGATATGACTATTTTCA
GAGACTTCGTAGTTTCCGAGCGTTCATGCTTGGACCTACGGGGGGTAACT
GTTGTACTTCGTATTTGAATTCTGTGTCGTTTGATTTATGTTCTTCTCTT
GCTTCTCAAGTTGAGCTAATTCATTTTTTCGGTTTAAAAATTTGGATTTG
TAAATACAGATTTTCTTAGCTTTGGCATATTTGTATGCTTGTTGTGGGGG
CGTTCTCCTTTGCTACCATCCCCTCGTAAGCAAGGCCACTTTCTGCAAGA
TGTCCAAGTGGCAGCATTTTTTGCATCACCCAGCCAAGAGTAGACACGTG
CGAGTGTTCCTCCCAGCAACCGGCGCGACCTACACGGTGTTGTTGCACGT
GTCCACCGCCCCGTGCGGGTGGACCTGGAGCGTAATCACGACACACTCCA
CCAGGCTATTGAGTCTCTTGGTTGCCCTCCGAGGTGGCAACGAAACCGTA
GCAGACGCAGCTGAAGAGGTTGTGGAGCACGTGCAGGAAGTCGGATAGAA
GAGTGGAGCTAACGACGTGTGCTCTAGAACCTAGACGTGTGTGACCGGTG
TATCGGCAGGCGGTGTGAAGGCATTGCATGACGTGATATTTGACGACTTG
GAAAGGTGTAGAACAATCATTTTCGCGACGGTTTGCGACAACCAAACAAG
TCGCATGAGTTTCATTAGCGGTGCCGGCTTCAAGAGTTTATGCAGCCACC
ATTGTAGCAGTACTATGGCTGTAATAGAAGGACACGAAGGCTGTTGCGGA
CGAGGTTCAGGACGGGGGTCTGATTTGGAGCAGATCGGCGAAGAAGTACG
ACGCACACGTTTCTCAGTTGCAGGGCCGTGCTACAGTACAATCATCGCCC
AAGACCTACTCAATGGTGGAAGAAGTGCGCTCTATCTCAACGTGTGAGAT
AGTAGCAGTAGATACGTTTGGTGCGTGCCATCTCGACGAAGCAGATAGCA
TGAAAAAAGTAAGATCCTCCGGTATCTAGGGGCGATCAGTGATACCGGGA
GATAAAAGCTACTTGTACAGTGTAACGCTTTAGTCAGCCGGCAGCTGCTG
CGGTTGTGTTTTCACATGAAAACCCGTTCTGGTCTCCGCTCAGTACCGTT
GAATGTCCGTACTGGTTCAACGCGGACGCCCCCGTGGTCACAAGCCAACT
ACCCAAGGACGGTCACAGCCTCTCTAGACAGTAAAGTCGGTTAACATGGT
GATGGCGTTTAAAAGTACGGTCCGTGGTGTTTTACGGAGACTTCGTCAAG
TCCTGGGGTATCAGTCTAGCTCTTGTGGGAGTCGTGTGGAAGGACGGAGA
GTCTTGCAATGTTTTGTGCCTGTTTTTGTGTCACTGCGCGTCGGGTACAA
GCGTGCAGTCTGTCTCTGTATATTTGTTTGTCATGTCGTTGAAAATGGCG
TCGTCACTCGAACAAATCCTCAGAACTTTCTCCGAAATATCGTGAAAACT
GTAGCAAGGATATGTGAGACAGAAAACGGTCGTGCTGATGTTGTCCACCA
TGAAATCGGGCTTTGAAGGCAGGTCCTGTGCGCCTGTGGACTCGTTTACC
TAAGCTGACAGCAAGTGCAGTTCATTTTGCCTCGCCAATTGTGCGCTTGC
CTCGCCAATATGTGCGCATAGAGTAGTAACGACAGTGATGGCGCAAGACG
GAGTACTCCCTGCAGCCTTACTCCTAATTTCTCGAGTCCTTAGAAGCGTG
TGAAGTAAACGGTTGCAGGTGTATGTACCGCCGACTAACGTATGGGAGCA
ATCACACAAAGGAGGAACGGGGCATCCCCGCAATGCACAACGGATAGCAA
AACTGAACGAGCCGGCCAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7656:2153..4771+

>mRNA_E_fasciculatus_S2_contig7656.15824.1 ID=mRNA_E_fasciculatus_S2_contig7656.15824.1|Name=mRNA_E_fasciculatus_S2_contig7656.15824.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7656:2153..4771+ (Ectocarpus fasciculatus EfasUO2)
GGTGCCACGTCCGTGATTATCAGACCCCTGTTCGTTCTCGAAGACGTTGT
TCTCTACGTCTTCGTGGTCGTGCGGTCCTTCTTCGTCTGGAGTTTCTCTG
GCGCATACAGCGTAGCGATGAACGTCCATGGCTTGTCCAACCTTCCCCGC
CCACTGTCGTCATCTCCCCGTATTGCTGCGGGTTCGTCCTCTTCCCCTCC
GTCGCCTGCGAGTCTGGCACGAGCAGCACCTCGGGCTCCAGGAAATCGCA
ACGCTTGGAGCACTCTTGTGCGCATCGTGGAAGGCATAATTGCCATCTGC
GTCTGTGTATTTGTGTTGGACGGAAGTGGGGTCAACATCAACATTCCGTC
CTCCCTGGCAACAACGTTACTTGGCTTCACGTTGAGTCTTTTTCTGTGTT
TCTCGCTGTAG
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