mRNA_E_fasciculatus_S2_contig7651.15819.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE) HSP 1 Score: 457 bits (1177), Expect = 6.990e-156 Identity = 267/330 (80.91%), Postives = 284/330 (86.06%), Query Frame = 1
Query: 1 MSVILVVGSPGSGKTALVQALVDSIPRCSNAEQQQQQPVPQAGNEGEPEASPPAAMVMPERQVLLEQANAKFDVYPASITTK----QVSFWRQAQAAVPVLALRSAEQLEGLEGIIAVFDLRQESSFDEAAQWAALVEEKEECAFRVCVGSKLDLLPEDPGDGAGFXXXXXXAPEPAESGLEGNDAXXXXXXXXXXXXEGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAA---AAIGGSGNDGAVRSGNVGGTG---SVSESGGGEDGTAAALSSTVGADGEHEVVSFRCSFL 960
MSVILVVGSPGSGKTALVQALVDS+PRCSNAEQQQ PV AGNEG+ EASPPA MVMP+ QVLLEQANAKFDV+PASITTK Q+SFWRQAQAAVP+LALRSAEQLEGLEGII +FDLRQES FDEA+QWAAL+E++EECAFRVCVGSKLDLLP+DPGDGAGF EPAESGLEG+ AXXXXXXXXXX EGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWT MEFLSSNRPSLMAA AA+GGS NDGAV G+V SVSES GGEDGTAAALSST GADG HEV + F+
Sbjct: 1 MSVILVVGSPGSGKTALVQALVDSLPRCSNAEQQQH-PVSPAGNEGQQEASPPAVMVMPDSQVLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPILALRSAEQLEGLEGIIVLFDLRQESGFDEASQWAALMEDREECAFRVCVGSKLDLLPQDPGDGAGFGTGAETTLEPAESGLEGDAAXXXXXXXXXX--EGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTDMEFLSSNRPSLMAAVATAAVGGSRNDGAV--GDVXXXXXXXSVSESSGGEDGTAAALSSTAGADGGHEVSEYLHGFV 325
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: IRC6, (uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI) HSP 1 Score: 321 bits (822), Expect = 2.550e-103 Identity = 179/241 (74.27%), Postives = 185/241 (76.76%), Query Frame = 1
Query: 250 VSFWRQAQAAVPVLALRSAEQLEGLEGIIAVFDLRQESSFDEAAQWAALVEEKEECAFRVCVGSKLDLLPEDPGDGAGFXXXXXXAPEPAESGLEGNDAXXXXXXXXXXXXEGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAA---AAIGGSGNDGAVRSG-NVGGTGSVSESGGGEDGTAAALSSTVGADGEHEVVSFRCSFL 960
+SFWRQAQAAVPVLALRSAEQLEGLEGII VFDLRQESS DE AQWAALVE++EECAFRVCVGSKLDLLPEDPGDG GF APEPAESGLEG DA EGL+ERR RCLGWCLDHGFEYVEADCRDS TGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAA AA GGS NDGA G NVGGTGSVS S AALS G HE + F+
Sbjct: 7 ISFWRQAQAAVPVLALRSAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDPGDGTGFGTGAETAPEPAESGLEGGDAAAA---------EGLQERRSRCLGWCLDHGFEYVEADCRDSYTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAAVATAAAGGSRNDGAAGDGGNVGGTGSVSGSSXXXXXXXAALSFAXXXXGGHEASEYLDGFV 238
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z725_9STRA) HSP 1 Score: 108 bits (270), Expect = 6.890e-23 Identity = 68/199 (34.17%), Postives = 100/199 (50.25%), Query Frame = 1
Query: 187 VLLEQANAKFDVYPASITTK----QVSFWRQAQAAVPVL-------ALRSAEQLEGLEGIIAVFDLRQESSFDEAAQWAALVEEKEECAFRVCVGSKLDLLPEDPGDGAGFXXXXXXAPEPAESGLEGNDAXXXXXXXXXXXXEGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTGM 750
VLLE A A+F + + TK Q+ FW Q + +P + A+ +A G+EGIIAVFD+ Q+ +F+ +W +E++ A R+ V SK L + A+ +G++ + RR + WCLDHGFEY+EA+C + GG+ REKEGVPR+VEALQS W +
Sbjct: 22 VLLEAAGARFAQHAWPLHTKYYSTQIRFWEQRE--LPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHL---------------RKLQMADLFADGDE---------------MERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASI 188
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S1P7_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 2.990e-8 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 592 RERRRRCLGWCLDHGFEYVEADCRDS--NTGGELREKEGVPRIVEALQSNVWT 744
+E RR L WCLD G+EYVEAD + +TG ++REK+G PRI+EA+Q VW+
Sbjct: 4 KEYSRRVL-WCLDRGYEYVEADLSEKGQSTGHDVREKDGFPRIIEAIQGTVWS 55
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Hypothetical (protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1K1_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 5.500e-7 Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 595 ERRRRCLGWCLDHGFEYVEADCRDSNT----GGELREKEGVPRIVEALQSNVWTG----MEFLSSNRPSLMAAAAI 798
E RR L WCLDHGFEY+EA C S+T G ++REKEG R+VEA+ S +WT + SS+R + AA+
Sbjct: 53 EYGRRVL-WCLDHGFEYIEA-CNLSDTSVLVGHDVREKEGFARVVEAIGSTIWTSATMHLNSSSSSRGAGNKPAAV 126
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A3A3_TRICV) HSP 1 Score: 57.8 bits (138), Expect = 2.400e-6 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 595 ERRRRCLGWCLDHGFEYVEADCRDSN--TGGELREKEGVPRIVEALQSNVWT 744
E RR L WCLD G+EYVEAD + +G + REKEG RIVEA++S VW+
Sbjct: 2 EYSRRVL-WCLDRGYEYVEADLSEKGIRSGHDEREKEGFARIVEAVESTVWS 52
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D022_CYCTE) HSP 1 Score: 58.5 bits (140), Expect = 4.450e-6 Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 595 ERRRRCLGWCLDHGFEYVEADCRDS--NTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMA 786
E RR L WCLDHG+EYVEAD D + G + R+K+G RIVEA+ VW+ + L A
Sbjct: 134 EYSRRVL-WCLDHGYEYVEADLSDEGRHKGHDERDKDGYARIVEAIAGTVWSSAKMGKKKNKELKA 198
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Hypothetical (protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F5E3_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 8.180e-6 Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query: 619 WCLDHGFEYVEAD--CRDSNTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAAA 792
WCLDHG+EYVEA+ G + R+KEG RI+EA+Q VW + + S M A+
Sbjct: 3 WCLDHGYEYVEANLSAEGQAKGHDDRDKEGFARIIEAIQGTVWASAVMRKTRKASTMHAS 62
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MZC2_9CHLO) HSP 1 Score: 57.0 bits (136), Expect = 9.150e-6 Identity = 44/150 (29.33%), Postives = 62/150 (41.33%), Query Frame = 1
Query: 310 QLEGLEGIIAVFDLRQESSFDEAAQWAALVEEKEECAFRVCVGSKLDLLPEDPGDGAGFXXXXXXAPEPAESGLEGNDAXXXXXXXXXXXXEGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELR---EKEGVPRIVEALQSNVWTGM 750
+L G E +I V D S+F A +WAA V+ R+ + +K D P G+G PE A GWCLD GFEYVEA L +++GV R++EALQ+++W G+
Sbjct: 105 ELCGAEAVILVCDATNPSTFAAARRWAAAVDSSG-AGVRLLIANKADAAPRAAAGGSGAAL-----PEAA--------------------------------GWCLDEGFEYVEAAAGAPAADAALALDGDRQGVVRVLEALQAHMWPGL 216
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Match: Uncharacterized (protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CFC3_9FUNG) HSP 1 Score: 55.1 bits (131), Expect = 6.170e-5 Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 610 CLGWCLDHGFEYVE----ADCRDSNTGGE---LREKEGVPRIVEALQSNVWTGM 750
C WC+D GFE+V+ A D+ GG REK G PRI+EAL+SN+W G+
Sbjct: 150 CEDWCIDLGFEFVDVCASATSEDAGDGGNSDAAREKFGFPRIIEALESNMWDGL 203 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7651.15819.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7651.15819.1 >prot_E_fasciculatus_S2_contig7651.15819.1 ID=prot_E_fasciculatus_S2_contig7651.15819.1|Name=mRNA_E_fasciculatus_S2_contig7651.15819.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=320bp MSVILVVGSPGSGKTALVQALVDSIPRCSNAEQQQQQPVPQAGNEGEPEAback to top mRNA from alignment at E_fasciculatus_S2_contig7651:2912..7073+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7651.15819.1 ID=mRNA_E_fasciculatus_S2_contig7651.15819.1|Name=mRNA_E_fasciculatus_S2_contig7651.15819.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4162bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7651:2912..7073+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7651:2912..7073+ >mRNA_E_fasciculatus_S2_contig7651.15819.1 ID=mRNA_E_fasciculatus_S2_contig7651.15819.1|Name=mRNA_E_fasciculatus_S2_contig7651.15819.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=960bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7651:2912..7073+ (Ectocarpus fasciculatus EfasUO2)back to top |