mRNA_E_fasciculatus_S2_contig7651.15818.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7651.15818.1
Unique NamemRNA_E_fasciculatus_S2_contig7651.15818.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: DUF6314 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHH0_ECTSI)

HSP 1 Score: 418 bits (1075), Expect = 2.060e-140
Identity = 213/252 (84.52%), Postives = 220/252 (87.30%), Query Frame = 1
Query:  157 MASTTASPITAGTTPTCSRDTSGGVEGSALLGLDTPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNASKEQGEQNHGGDGQDKVDHDSLLFLRYREQGTFRVNGEGAGFEAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDFQTARPCETIAGAGTGGESSXXXXXXXXXXXXXXXXXXRAEFEHLCVRDMYRGKVEVVGPNEFKTSWHVTGPQKDGRINATFKRTLSEEDD 912
            MAST ASPITAGTT TCSR++SG VEGSA LGLDTPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSN  KE+GEQNH GDGQD++DH SLLFLRYREQGTFRVNGEGAGFEAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDFQTA P ET AGAGTGGE+                   RAEFEHLCVRDMYRGKVEV GPNEFKTSWHVTGPQKDGRINATFKR LS+EDD
Sbjct:    1 MASTNASPITAGTT-TCSRESSGSVEGSASLGLDTPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNT-KEEGEQNHDGDGQDEMDHSSLLFLRYREQGTFRVNGEGAGFEAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDFQTASPYETTAGAGTGGEAGGTGVAAAGASFAPPPP--RAEFEHLCVRDMYRGKVEVAGPNEFKTSWHVTGPQKDGRINATFKRRLSQEDD 248          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLI4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.260e-13
Identity = 49/129 (37.98%), Postives = 63/129 (48.84%), Query Frame = 1
Query:  259 TPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNASKEQGEQNHGGDGQDKVDHDSLLFLRYREQGTFRVNGEGAGF-EAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDF 642
            TP G++ YL G W L K ++YK GG  G+W GVA+F P       G             GDG  +        L YRE G    +G    F  AG+ L +DCS    RV+F+D P   + LRFFHE+ F
Sbjct:   14 TPMGLHTYLIGSWSLSKRLEYKRGGGFGSWSGVASFIPPNNNLVVGE------------GDGSKQ--------LVYREDGNIIFDGSQKSFTSAGKPLCFDCSVEPTRVYFMDAPD--ERLRFFHEIPF 120          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.180e-10
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
            + +R  LFAGA+ARQPDG L KR+ FG++V GE+PGR  PEQ W  C KDD
Sbjct:   55 VRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDD 105          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS41_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 8.480e-10
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 1084 LFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
            L AGA+ARQPDG L KR+ FG++V GE+PGR  PEQ W  C KDD
Sbjct:    2 LVAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDD 46          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-9
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDDSSKSSKIQQFVVVDSQGGSRLNT 1287
            + +R  LFAGA+ARQPDG L KR+ FG++V GEDPG+  PEQ W  C KDD      ++ F   + +G   L T
Sbjct:  225 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD------MKMFEARELRGSWPLGT 292          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.030e-9
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
            + +R  LFAGA+ARQPDG L KR+ FG++V GEDPG+  PEQ W  C KDD
Sbjct:  174 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 224          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Reverse (transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.450e-9
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
            + +R  LFAGA+ARQPDG L KR+ FG++V GEDPG+  PEQ W  C KDD
Sbjct:  193 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 243          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Reverse (transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.790e-9
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
            + +R  LFAGA+ARQPDG L KR+ FG++V GEDPGR  PEQ W  C KDD
Sbjct:  973 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDD 1023          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Reverse (transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.510e-9
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
            + +R  LFAGA+ARQPDG L KR+ FG++V GEDPG+  PEQ W  C KDD
Sbjct:  315 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 365          
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.360e-9
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
            + +R  LFAGA+ARQPDG L KR+ FG++V GEDPG+  PEQ W  C KDD
Sbjct:  499 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 549          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DUF63142.060e-14084.52domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical1.260e-1337.98protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized4.180e-1060.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.480e-1064.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.000e-947.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.030e-960.78protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Reverse2.450e-960.78transcriptase domain-containing protein n=2 Tax=Ec... [more]
Reverse2.790e-962.75transcriptase domain-containing protein n=9 Tax=Ec... [more]
Reverse4.510e-960.78transcriptase domain-containing protein n=5 Tax=Ec... [more]
Uncharacterized6.360e-960.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7651contigE_fasciculatus_S2_contig7651:38..2485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score420.2
Seed ortholog evalue8e-115
Seed eggNOG ortholog2880.D7FHH0
Model size1962
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG OGs2E4H1@1,2SG7J@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002440.1
Cds size915
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842427.3244147-UTR-E_fasciculatus_S2_contig7651:37..10841696842427.3244147-UTR-E_fasciculatus_S2_contig7651:37..1084Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7651 38..1084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842427.3347945-CDS-E_fasciculatus_S2_contig7651:1084..11631696842427.3347945-CDS-E_fasciculatus_S2_contig7651:1084..1163Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7651 1085..1163 -
1696842427.3444881-CDS-E_fasciculatus_S2_contig7651:1649..24851696842427.3444881-CDS-E_fasciculatus_S2_contig7651:1649..2485Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7651 1650..2485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7651.15818.1prot_E_fasciculatus_S2_contig7651.15818.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7651 1085..2485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7651.15818.1

>prot_E_fasciculatus_S2_contig7651.15818.1 ID=prot_E_fasciculatus_S2_contig7651.15818.1|Name=mRNA_E_fasciculatus_S2_contig7651.15818.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=305bp
MPPVRLLALTVCGCLSSALRRPVRPQLLHRCHHHQHQYPTSSSAVRGLRF
KSMASTTASPITAGTTPTCSRDTSGGVEGSALLGLDTPAGVYRYLRGRWG
LEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNASKEQGEQNHGGDGQD
KVDHDSLLFLRYREQGTFRVNGEGAGFEAGQRLVYDCSGPVVRVHFVDDP
KKPDALRFFHELDFQTARPCETIAGAGTGGESSGTGVAAAAGASFAPPPP
PRAEFEHLCVRDMYRGKVEVVGPNEFKTSWHVTGPQKDGRINATFKRTLS
EEDD*
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mRNA from alignment at E_fasciculatus_S2_contig7651:38..2485-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7651.15818.1 ID=mRNA_E_fasciculatus_S2_contig7651.15818.1|Name=mRNA_E_fasciculatus_S2_contig7651.15818.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2448bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7651:38..2485- (Ectocarpus fasciculatus EfasUO2)
ATGCCCCCTGTGAGACTGCTAGCACTGACTGTCTGCGGCTGCCTTTCCTC TGCTCTACGGAGACCTGTACGTCCCCAGCTGCTGCACCGCTGCCACCATC ACCAACACCAATATCCGACCTCATCATCAGCGGTTCGCGGCCTTCGTTTC AAGAGCATGGCGTCAACAACGGCGAGCCCTATCACTGCTGGAACAACACC AACATGCAGCAGAGATACTAGTGGCGGCGTCGAAGGATCCGCTTTGCTCG GCCTCGACACCCCTGCCGGGGTGTATCGGTATCTCCGTGGTCGATGGGGG CTCGAGAAGACTATCGACTACAAGGCCGGGGGAATGGCGGGGACCTGGAG AGGAGTCGCAACATTCTCTCCCAAACAACAGCAAGCTTGCGACGGCAGCA ACGCCAGCAAGGAGCAGGGAGAACAAAACCACGGTGGTGATGGCCAAGAC AAGGTGGACCACGACTCTCTGCTCTTTCTGCGCTACAGGGAACAGGGAAC CTTTCGAGTGAACGGCGAGGGTGCCGGCTTCGAAGCTGGGCAGCGGCTGG TCTACGACTGCAGCGGCCCCGTCGTGCGCGTTCACTTCGTCGACGACCCG AAAAAGCCCGATGCTCTCCGATTTTTTCACGAACTCGACTTTCAAACAGC ACGCCCGTGCGAGACAATAGCAGGGGCTGGAACCGGCGGGGAGTCAAGCG GTACGGGGGTGGCGGCGGCAGCGGGGGCTAGTTTTGCGCCGCCGCCGCCG CCGCGAGCGGAGTTTGAGCACCTGTGTGTCCGAGACATGTACAGGGGGAA GGTGGAGGTGGTCGGGCCAAACGAGTTCAAGACAAGGTATGCAATAACCG TGGTTGCTCCACGTCAACTTGCTCGTTTTTTTGGATACTTCTAGTGAGGT TAGCGGTGTACATAATCACAACGCTGCCTGGAAAGGCCTTCCTGTGTTGT TCAGAACCTTGCCACATGTGGATTTGAAGTGAAGGTGTAAGCTTTGAGAT TCTCGTTATACCACGTACCGGAACCAGCTAGCAGTACCAGGTGAAGTATT TTCCTTTCATGTGGTTACAGGTGTCCATCGATGGGAAGTGGAAGTCTCGG CGTGTGTAGGCTGTGTCTATTGCATCGTCTGCAAGACGTGAAACCGGCGA CGTGCTTAGTTGAATTAAAACCCTCTGCTCCTTTGCGCCAGCAATGGCAT TTGGCGAAGCCGCCGGTAGGAACCTCTATTCTGAGGGTTATTATTCCACA CTGCACCTCCCACAGTGCTGCCGCACTCCCAACAATGCCCTCGTTGTGTT CACCGCAACTCTCTCGTCACAGTTGGCACGTTACGGGGCCGCAGAAGGAT GGCCGCATAAACGCCACCTTTAAACGAACACTATCCGAGGAAGACGATTG ACAAGACCGTTCCGTGGCTGGGCCTACTGCCAGCCTTGGTTAGTTTGAGC AACCATGCAAGTTTCCTACGTGCAGCCGCATGAGCGCCGAAGATATAGGT CCTTCGCCCAGACGAAGCTAGCTACCGAAGCGTGGACACCACTCCGTCCG GATACTGCGGCGATCACCGCTGTTTGCTGGAGCATTAGCCAGACAACCGG ACGGATGTCTCTCGAAAAGAGTGACGTTCGGCGACATCGTGAGGGGGGAG GACCCAGGCAGGTGGTGCCCGGAACAGCGTTGGGCGAAATGCTTCAAGGA CGATTCTTCCAAGAGTTCGAAGATTCAGCAGTTCGTTGTCGTTGATTCAC AGGGAGGTAGTAGACTTAACACTCCGTATTGTGAGGTAGACAAGAGAGAG CTGGCTGCGCGTATGCGCACAGTACATGCCAACAACGGAGTCACTGCGAC ATAGTGTAGTAGAACGATCGTTTGTGTGAAGCATGCATTGGTGGTAGTCT TTGGTGCGGCCGGTATGACTTTGCTGCCATCGCATAGGGGGCACCCGCGA TTGCGGGGTGCACATGTGATGGGAGGAAAGGTAGTTGGATCAATAACTAA TTTCCAGTCGGCAAACAATTATCTCCAAGAAGATTATCTTCGTGGATGAA TGCCCGCACTCAATTCCAACCGCTTAGGCCGAGTCTTACGGTCTGATTTT TTCTTGGATTGTTTTTTATCCTCTCTCGGGGGGTGGTGGTCTGCGCAGGA AAAATTATCCAGATCCAATCGACCTTCTACGGTTCCTCGACGGATTTTGT TTTTCCAAGGGGAAAACATAGGCCGATTCAGGTTTGTGTTGGTCACAACA TGCTTCAGTTCACTTTTTCGGCTCGTGCTCGACCAACAAGACACGGAGCG CCCTGTTCTTGGGCCGCCTGCAGAGGGCATGTGTATGATCGCACGCCATT GGCCGCAGTTTGTAGATATCGTCGGCCGAAGGCCTCTTTCTGGCATGCGT TGTGGACTGATCACACTCGGTGCAACCAGAAAAAAAAAGGCAACGTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7651:38..2485-

>mRNA_E_fasciculatus_S2_contig7651.15818.1 ID=mRNA_E_fasciculatus_S2_contig7651.15818.1|Name=mRNA_E_fasciculatus_S2_contig7651.15818.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=915bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7651:38..2485- (Ectocarpus fasciculatus EfasUO2)
ATGCCCCCTGTGAGACTGCTAGCACTGACTGTCTGCGGCTGCCTTTCCTC
TGCTCTACGGAGACCTGTACGTCCCCAGCTGCTGCACCGCTGCCACCATC
ACCAACACCAATATCCGACCTCATCATCAGCGGTTCGCGGCCTTCGTTTC
AAGAGCATGGCGTCAACAACGGCGAGCCCTATCACTGCTGGAACAACACC
AACATGCAGCAGAGATACTAGTGGCGGCGTCGAAGGATCCGCTTTGCTCG
GCCTCGACACCCCTGCCGGGGTGTATCGGTATCTCCGTGGTCGATGGGGG
CTCGAGAAGACTATCGACTACAAGGCCGGGGGAATGGCGGGGACCTGGAG
AGGAGTCGCAACATTCTCTCCCAAACAACAGCAAGCTTGCGACGGCAGCA
ACGCCAGCAAGGAGCAGGGAGAACAAAACCACGGTGGTGATGGCCAAGAC
AAGGTGGACCACGACTCTCTGCTCTTTCTGCGCTACAGGGAACAGGGAAC
CTTTCGAGTGAACGGCGAGGGTGCCGGCTTCGAAGCTGGGCAGCGGCTGG
TCTACGACTGCAGCGGCCCCGTCGTGCGCGTTCACTTCGTCGACGACCCG
AAAAAGCCCGATGCTCTCCGATTTTTTCACGAACTCGACTTTCAAACAGC
ACGCCCGTGCGAGACAATAGCAGGGGCTGGAACCGGCGGGGAGTCAAGCG
GTACGGGGGTGGCGGCGGCAGCGGGGGCTAGTTTTGCGCCGCCGCCGCCG
CCGCGAGCGGAGTTTGAGCACCTGTGTGTCCGAGACATGTACAGGGGGAA
GGTGGAGGTGGTCGGGCCAAACGAGTTCAAGACAAGTTGGCACGTTACGG
GGCCGCAGAAGGATGGCCGCATAAACGCCACCTTTAAACGAACACTATCC
GAGGAAGACGATTGA
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