mRNA_E_fasciculatus_S2_contig7651.15818.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: DUF6314 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHH0_ECTSI) HSP 1 Score: 418 bits (1075), Expect = 2.060e-140 Identity = 213/252 (84.52%), Postives = 220/252 (87.30%), Query Frame = 1
Query: 157 MASTTASPITAGTTPTCSRDTSGGVEGSALLGLDTPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNASKEQGEQNHGGDGQDKVDHDSLLFLRYREQGTFRVNGEGAGFEAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDFQTARPCETIAGAGTGGESSXXXXXXXXXXXXXXXXXXRAEFEHLCVRDMYRGKVEVVGPNEFKTSWHVTGPQKDGRINATFKRTLSEEDD 912
MAST ASPITAGTT TCSR++SG VEGSA LGLDTPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSN KE+GEQNH GDGQD++DH SLLFLRYREQGTFRVNGEGAGFEAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDFQTA P ET AGAGTGGE+ RAEFEHLCVRDMYRGKVEV GPNEFKTSWHVTGPQKDGRINATFKR LS+EDD
Sbjct: 1 MASTNASPITAGTT-TCSRESSGSVEGSASLGLDTPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNT-KEEGEQNHDGDGQDEMDHSSLLFLRYREQGTFRVNGEGAGFEAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDFQTASPYETTAGAGTGGEAGGTGVAAAGASFAPPPP--RAEFEHLCVRDMYRGKVEVAGPNEFKTSWHVTGPQKDGRINATFKRRLSQEDD 248
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLI4_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.260e-13 Identity = 49/129 (37.98%), Postives = 63/129 (48.84%), Query Frame = 1
Query: 259 TPAGVYRYLRGRWGLEKTIDYKAGGMAGTWRGVATFSPKQQQACDGSNASKEQGEQNHGGDGQDKVDHDSLLFLRYREQGTFRVNGEGAGF-EAGQRLVYDCSGPVVRVHFVDDPKKPDALRFFHELDF 642
TP G++ YL G W L K ++YK GG G+W GVA+F P G GDG + L YRE G +G F AG+ L +DCS RV+F+D P + LRFFHE+ F
Sbjct: 14 TPMGLHTYLIGSWSLSKRLEYKRGGGFGSWSGVASFIPPNNNLVVGE------------GDGSKQ--------LVYREDGNIIFDGSQKSFTSAGKPLCFDCSVEPTRVYFMDAPD--ERLRFFHEIPF 120
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 4.180e-10 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
+ +R LFAGA+ARQPDG L KR+ FG++V GE+PGR PEQ W C KDD
Sbjct: 55 VRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDD 105
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS41_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 8.480e-10 Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1
Query: 1084 LFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
L AGA+ARQPDG L KR+ FG++V GE+PGR PEQ W C KDD
Sbjct: 2 LVAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDD 46
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.000e-9 Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDDSSKSSKIQQFVVVDSQGGSRLNT 1287
+ +R LFAGA+ARQPDG L KR+ FG++V GEDPG+ PEQ W C KDD ++ F + +G L T
Sbjct: 225 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD------MKMFEARELRGSWPLGT 292
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.030e-9 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
+ +R LFAGA+ARQPDG L KR+ FG++V GEDPG+ PEQ W C KDD
Sbjct: 174 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 224
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Reverse (transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.450e-9 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
+ +R LFAGA+ARQPDG L KR+ FG++V GEDPG+ PEQ W C KDD
Sbjct: 193 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 243
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Reverse (transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 2.790e-9 Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
+ +R LFAGA+ARQPDG L KR+ FG++V GEDPGR PEQ W C KDD
Sbjct: 973 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDD 1023
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Reverse (transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 4.510e-9 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
+ +R LFAGA+ARQPDG L KR+ FG++V GEDPG+ PEQ W C KDD
Sbjct: 315 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 365
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 6.360e-9 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1066 ILRRSPLFAGALARQPDGCLSKRVTFGDIVRGEDPGRWCPEQRWAKCFKDD 1218
+ +R LFAGA+ARQPDG L KR+ FG++V GEDPG+ PEQ W C KDD
Sbjct: 499 VRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 549 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7651.15818.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7651.15818.1 >prot_E_fasciculatus_S2_contig7651.15818.1 ID=prot_E_fasciculatus_S2_contig7651.15818.1|Name=mRNA_E_fasciculatus_S2_contig7651.15818.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=305bp MPPVRLLALTVCGCLSSALRRPVRPQLLHRCHHHQHQYPTSSSAVRGLRFback to top mRNA from alignment at E_fasciculatus_S2_contig7651:38..2485- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7651.15818.1 ID=mRNA_E_fasciculatus_S2_contig7651.15818.1|Name=mRNA_E_fasciculatus_S2_contig7651.15818.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2448bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7651:38..2485- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7651:38..2485- >mRNA_E_fasciculatus_S2_contig7651.15818.1 ID=mRNA_E_fasciculatus_S2_contig7651.15818.1|Name=mRNA_E_fasciculatus_S2_contig7651.15818.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=915bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7651:38..2485- (Ectocarpus fasciculatus EfasUO2)back to top |