mRNA_E_fasciculatus_S2_contig7650.15816.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7650.15816.1
Unique NamemRNA_E_fasciculatus_S2_contig7650.15816.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7650.15816.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF4_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 1.330e-101
Identity = 186/195 (95.38%), Postives = 191/195 (97.95%), Query Frame = 1 
Query:    1 MMTGGGGAVGKKVSALVQEQLQYCRSLRRADMLSAVQNVATDEECLKQANSLIILLKADVRVLNACATRLLIPSEAAIITDSATSEVPRSAYNVETIERXXXXXXXXXXXXXXXXXIQAVSATNQLLLIRERLQAGLSSRLLELKMEMDKEFGTAFVDMESYLRMEKDTQAKSDAEHCSACARYFVELCYKFQVI 585
            MMTGGG A GKKVSALVQEQLQYCRSLRRADMLSAVQNVATDEECLKQANSLI+LLKADVRVLNACA RLL+PSEAAI+TDSATSEVPRSAYNVETIERXXXXXXXXXXXXXXXXXIQAVSATNQLLLIRERLQAGLSSRLLELK +MDKEFGTAFVDMESYLRMEKDTQAKSDAEHCSACARYFVELCYKFQV+
Sbjct:    1 MMTGGGAAGGKKVSALVQEQLQYCRSLRRADMLSAVQNVATDEECLKQANSLIMLLKADVRVLNACAARLLLPSEAAIVTDSATSEVPRSAYNVETIERXXXXXXXXXXXXXXXXXIQAVSATNQLLLIRERLQAGLSSRLLELKTKMDKEFGTAFVDMESYLRMEKDTQAKSDAEHCSACARYFVELCYKFQVM 195
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BLAST of mRNA_E_fasciculatus_S2_contig7650.15816.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ6_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.110e-63
Identity = 141/197 (71.57%), Postives = 150/197 (76.14%), Query Frame = 1 
Query:  112 NVATDEECLKQANSLIILLKADVRVLNACATRLLIPSEAAIITDSATSEVPR-------------------SAYNVETIERXXXXXXXXXXXXXXXXXIQAVSATNQLLLIRERLQAGLSSRLLELKMEMDKEFGTAFVDMESYLRMEK--------------------DTQAKSDAEHCSACARYFVELCYKFQVI 585
            NVATDEECLKQANSLI+LLKADVRVLNACA RLL+PS+AAI+TDSAT+E+PR                   SAY+VETI  XXXXXXXXXXXXXXX  +QAVSATNQLLLIRERLQAGLSSRLLELK EMDKEFGTAFVDMESYLRMEK                    DTQAKSDAEHCS C RYFVELCYKFQV+
Sbjct:    8 NVATDEECLKQANSLIMLLKADVRVLNACAARLLLPSDAAIVTDSATNEIPRRSHSGDGHLKDTTTFPHENSAYSVETIXXXXXXXXXXXXXXXXXSSLQAVSATNQLLLIRERLQAGLSSRLLELKTEMDKEFGTAFVDMESYLRMEKAKKTVPNERPFVTYSSRPMQDTQAKSDAEHCSTCTRYFVELCYKFQVM 204
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7650.15816.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.330e-10195.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.110e-6371.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7650contigE_fasciculatus_S2_contig7650:451..2894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score313.9
Seed ortholog evalue5.2e-83
Seed eggNOG ortholog2880.D7FTF4
Model size588
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2EUYJ@1,2SX17@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001140.1
Cds size588
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842427.187139-CDS-E_fasciculatus_S2_contig7650:450..5361696842427.187139-CDS-E_fasciculatus_S2_contig7650:450..536Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7650 451..536 -
1696842427.2028878-CDS-E_fasciculatus_S2_contig7650:1030..12631696842427.2028878-CDS-E_fasciculatus_S2_contig7650:1030..1263Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7650 1031..1263 -
1696842427.214968-CDS-E_fasciculatus_S2_contig7650:1688..18461696842427.214968-CDS-E_fasciculatus_S2_contig7650:1688..1846Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7650 1689..1846 -
1696842427.2262526-CDS-E_fasciculatus_S2_contig7650:2783..28941696842427.2262526-CDS-E_fasciculatus_S2_contig7650:2783..2894Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7650 2784..2894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7650.15816.1prot_E_fasciculatus_S2_contig7650.15816.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7650 451..2894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7650.15816.1

>prot_E_fasciculatus_S2_contig7650.15816.1 ID=prot_E_fasciculatus_S2_contig7650.15816.1|Name=mRNA_E_fasciculatus_S2_contig7650.15816.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=196bp
MMTGGGGAVGKKVSALVQEQLQYCRSLRRADMLSAVQNVATDEECLKQAN
SLIILLKADVRVLNACATRLLIPSEAAIITDSATSEVPRSAYNVETIERL
FRRFRQVDTTDTSGSSIQAVSATNQLLLIRERLQAGLSSRLLELKMEMDK
EFGTAFVDMESYLRMEKDTQAKSDAEHCSACARYFVELCYKFQVI*
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mRNA from alignment at E_fasciculatus_S2_contig7650:451..2894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7650.15816.1 ID=mRNA_E_fasciculatus_S2_contig7650.15816.1|Name=mRNA_E_fasciculatus_S2_contig7650.15816.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2444bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7650:451..2894- (Ectocarpus fasciculatus EfasUO2)
ATGATGACGGGTGGCGGTGGAGCCGTTGGCAAGAAAGTCAGCGCCCTGGT
TCAGGAGCAGCTGCAGTATTGCCGCTCTCTCCGTCGGGCCGACATGCTCT
CGGCTGTCCAGGTATGTACTGCAGTGTGGATATAACGACCTGCACGCACA
CACAGACGGTTAGCGCGATCGGTGCTACGCTATAAAAGAGGTAGTTTTTC
TTCAGATCTCGCTGGTGTGGTACAGCTATTTTCGGAGATTGCGTTTGTTA
GAATAGCGCTCTCACACCCTGCCCACTCCGTTCGGGTGGGAACACTACGG
CGATTCCCATCGAATCACAAGGAGCACCCAGCGAAATGCAAGTTGACGAG
GACGAGGCTCGTGAAGGAGGTAGCGACCAATGAGATGGATCCATGCAGGA
GGACATACATGTAGAACCGAGAGAACGTGGTGTGGAAGAGAGCAAGGAAG
GGCGTCGGTCCATCAGATCCTCCATGCAATACTCCACAAAGCCGTGCAGA
GTTTTGGGACGGCAGGGTCTGTAGGAACGCCAAACGACGGCATCAGATGA
AGGTCTCGGAAAACTAACTATGGGAAGCAGTGAAAAACTTAACTCAGCTC
GCGCTGTGTAATTCTACATCGTCGCACAGTATATCTGAGGTTGCTGCGGG
TTGCGTGACTCGGTGAAGCTGGTTTCAGAACGGGGGCATTTTGGTGACAA
TCACCACTGTCCACGGGTGCCTCTTGGCTAGTCTACGAGCCACCTCGTTT
CTTAGCAGATGGGTTCGCACCATATAGATATGGCCTCAAAGGACGGTACG
CACCACGACGTTAGGACATCTCTCATTTCAATGTGGGGCATCTCAACATC
GGCTTGGGATTTTTTCTGAGTGCCTGTGCTTATGGCCGTGAGCTTAAACA
TATGCTTCCCTTTTTTTCCCCTCAAGTTTCTTAACTCTCAGGCTCTTAAC
ATGGGCCCGATGTGCCCTTACTTGTACTACGATGTTTCCCACGCTCACTC
CCTCACGCACCGACCTGTTTGCGCATGCTCTCGCCCCCCGGTACGAAGAA
CGTCGCCACCGATGAGGAGTGCCTCAAGCAGGCAAATTCCCTCATCATAC
TGCTCAAGGCCGACGTGCGGGTGCTAAACGCGTGTGCCACGAGACTCCTT
ATTCCTTCAGAGGCAGCGATCATCACAGATTCGGCTACGAGCGAAGTACC
GCGCAGGTAATCATTGCGTTGGTATGTTCGGGACCGTGTAGTAACGAAAT
TCGTTTGGACGTGCCACCAGAAAGCACGACGCGCGGGCAAGCTTGCTGCT
GGTCGCTCCTCGCTAGGCCACTTGCGAAGGAAGTCCTAGTGAGCAGCGAT
GCACTACGCAGACGTCAGGTTTTGTTTCTTCGTGGAAACGCTCACTGCGT
GTGGAGTACGTCGGGAGCTGAAAGATAAGAAACCGGAGCGTACGGCGAGG
TAAATAGCACAGCGGTGACCATGACCACCCTAAAACACCACTAGTTTCCG
CACAAAAACAGCACCTATCGGCGACCATGACCAGCTCAAACTTAAAAACG
CGTGCAATTTCCGCTCAAAACCAGTGCCTATCAGTGACCGCGGCCACATT
TAAACGCCGCTGCTTTCCGCACAAAAAACAGCGCCTACAACGTGGAAACT
ATCGAGCGGCTTTTCCGGAGGTTTCGGCAGGTGGACACCACGGATACGAG
TGGCAGCAGCATCCAAGCCGTCTCGGCCACGAACCAGCTCCTCCTCATCC
GCGAGCGGTTGCAGGCGGGGCTGAGCTCGCGTCTTCTGGAGCTCAAGATG
GAGATGGACAAGGAGTTCGGCACCGCTTTCGTCGACATGGAGAGCTACCT
CAGGATGGAGAAAGGTGCAAATGGGCATAGATGTTGTAGGCCGTTAGGGC
AGTCTTGTACGCGGCGCGTTTTGCCTAATGTCTGGAGCGTTTTCTACATT
CGGAGAAGTTTGAAAAAAGCGAAGGGAGGGTGTTAAAAACACATTGGGAG
TCAGTCTACCAAATCCGATTATCTTGGGCACCAGTCGCTTCCAAGTTTTG
AAGCCAAAGCCTTGGAAAGAACAGCCCCGTTCAAAATACCCGTGCTTCGT
AGATCGCACGCTACGCAGTTCCTTTCTTGTGGGTCCTTCTCATTACTTGC
TCGACGAATGCCTTGCCTGCTTGAGACTTAGCTCCTCCATGTGCCGGTGT
ACAGGACTTTTTAGTTCAGCGAAGAAAGCTTGGTTTGGTCCTGCCCCGTT
TTGCCGGTGAGACATGGTGGTGTGTCGGACACGCTCGACAAAACGACGAA
GAAATCAGTGCCCCAACGGCGCGGCCGTTCGTGACGTACTCTCCCTGCCC
CATGCAAGACACCCAGGCGAAGTCGGACGCGGAGCACTGCTCTGCGTGCG
CGAGGTACTTCGTCGAGCTCTGCTACAAGTTCCAGGTGATTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7650:451..2894-

>mRNA_E_fasciculatus_S2_contig7650.15816.1 ID=mRNA_E_fasciculatus_S2_contig7650.15816.1|Name=mRNA_E_fasciculatus_S2_contig7650.15816.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=588bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7650:451..2894- (Ectocarpus fasciculatus EfasUO2)
ATGATGACGGGTGGCGGTGGAGCCGTTGGCAAGAAAGTCAGCGCCCTGGT
TCAGGAGCAGCTGCAGTATTGCCGCTCTCTCCGTCGGGCCGACATGCTCT
CGGCTGTCCAGAACGTCGCCACCGATGAGGAGTGCCTCAAGCAGGCAAAT
TCCCTCATCATACTGCTCAAGGCCGACGTGCGGGTGCTAAACGCGTGTGC
CACGAGACTCCTTATTCCTTCAGAGGCAGCGATCATCACAGATTCGGCTA
CGAGCGAAGTACCGCGCAGCGCCTACAACGTGGAAACTATCGAGCGGCTT
TTCCGGAGGTTTCGGCAGGTGGACACCACGGATACGAGTGGCAGCAGCAT
CCAAGCCGTCTCGGCCACGAACCAGCTCCTCCTCATCCGCGAGCGGTTGC
AGGCGGGGCTGAGCTCGCGTCTTCTGGAGCTCAAGATGGAGATGGACAAG
GAGTTCGGCACCGCTTTCGTCGACATGGAGAGCTACCTCAGGATGGAGAA
AGACACCCAGGCGAAGTCGGACGCGGAGCACTGCTCTGCGTGCGCGAGGT
ACTTCGTCGAGCTCTGCTACAAGTTCCAGGTGATTTGA
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