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Homology
BLAST of mRNA_E_fasciculatus_S2_contig765.15813.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB7_ECTSI) HSP 1 Score: 818 bits (2114), Expect = 5.370e-295 Identity = 502/546 (91.94%), Postives = 516/546 (94.51%), Query Frame = 1
Query: 1 MSFSVEASSAFHATTDTGTLASLSPSLLPRAPPISLSNRMSRASELRASLVAAAGAEPAASVASSRTGGKSSMTYDELLVGCIAMLGVPGGMRARESLRRVLKAWSEDGDRHDGDDDTPRPTEAARPRRSKQRPSLPLEARGGASTSTXXAAGHSATDRSSLLLAVRGSQMDSSANNDRRLAVAEAAAARWEKRYNQQASATERALLETRNAKISLREVERVLGEERADAARAAHXXXXXXXXXXXXXXXXXXXXDEREGGLTAALSESAAHSLQSMAVRERCEKQLRQRLQLSQAKLIEAETEIGELRKAVKAAEKNRSLQPVVVSLGEILKECLASMGLVRGVPDGEFHAMVSVLRDRAEKAATGFLSVEGLHAAAEGARAIDAIRDLRVQLQEALLDASRQRARRVSADARVKEKEAGEMERTFGKEELLKARKETSETRARLAVADAEVKQLNKSLKEEQERSAAAWAATRHRSAPIADVRGIFDEGHRLVQEKMKLKAQQIQQEXXXXXXXXSEARLREVQDARATPPMPRARPATKSCNT 1638
MS SVEAS AF ATT+TGTLAS+SPSLLPRAPP SLSNRMSR SELRASLVAAAGAEPAA VASSRTG KSS+T+DELLVGCIAMLGVPGG+RARESLRRVLKAWSEDGDRHD DD + RPTEAARPRRSKQRPSLPLEARGG S T AAGHSATDRSS LLAVRG+QMDSSANNDRRLAVAEAAAARWEKRYNQQASATE+ALLETRNAKISLREVERVLGEERADAARAA XXXXXXXXXXXXXXXXXXX DE+EGGLT+ALSES AHSLQSMAVRERCEKQLRQRLQLSQAKL EAETEIGELRKA KAAEKNRSLQPVVVSLGEILKECLASMG+VRGVPDGEFHAMVSVLRDRAEKAATGFLSVEGLHAAAEGARA+DAIRDLRVQLQEALLDASRQRARRVSADARVKEKE GEMERTFGK+ELLKARKET ETRARLAVADAEVKQL KSLKEEQERSAAAWAATRHRSAPIADVRGIFDEGHRLVQEKMKLKAQQIQQEXXXXXXXXSEARLREVQDA PPM RARP T SC+T
Sbjct: 1 MSLSVEASPAFQATTETGTLASVSPSLLPRAPPPSLSNRMSRTSELRASLVAAAGAEPAARVASSRTGRKSSLTFDELLVGCIAMLGVPGGVRARESLRRVLKAWSEDGDRHDCDDGSRRPTEAARPRRSKQRPSLPLEARGGTSNFTTTAAGHSATDRSSSLLAVRGNQMDSSANNDRRLAVAEAAAARWEKRYNQQASATEKALLETRNAKISLREVERVLGEERADAARAARXXXXXXXXXXXXXXXXXXXQDEKEGGLTSALSESVAHSLQSMAVRERCEKQLRQRLQLSQAKLAEAETEIGELRKAAKAAEKNRSLQPVVVSLGEILKECLASMGIVRGVPDGEFHAMVSVLRDRAEKAATGFLSVEGLHAAAEGARALDAIRDLRVQLQEALLDASRQRARRVSADARVKEKETGEMERTFGKDELLKARKETGETRARLAVADAEVKQLKKSLKEEQERSAAAWAATRHRSAPIADVRGIFDEGHRLVQEKMKLKAQQIQQEXXXXXXXXSEARLREVQDAHTIPPMSRARPGTTSCST 546
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1641 |
| Hectar predicted targeting category | other localisation |
| Exons | 10 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-02_005480.1 |
| Cds size | 1641 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842426.5845912-CDS-E_fasciculatus_S2_contig765:2671..3025 | 1696842426.5845912-CDS-E_fasciculatus_S2_contig765:2671..3025 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 2672..3025 + |
| 1696842426.596845-CDS-E_fasciculatus_S2_contig765:3470..3681 | 1696842426.596845-CDS-E_fasciculatus_S2_contig765:3470..3681 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 3471..3681 + |
| 1696842426.6075954-CDS-E_fasciculatus_S2_contig765:4082..4317 | 1696842426.6075954-CDS-E_fasciculatus_S2_contig765:4082..4317 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 4083..4317 + |
| 1696842426.6244614-CDS-E_fasciculatus_S2_contig765:4583..4713 | 1696842426.6244614-CDS-E_fasciculatus_S2_contig765:4583..4713 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 4584..4713 + |
| 1696842426.6402016-CDS-E_fasciculatus_S2_contig765:4995..5055 | 1696842426.6402016-CDS-E_fasciculatus_S2_contig765:4995..5055 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 4996..5055 + |
| 1696842426.6553864-CDS-E_fasciculatus_S2_contig765:5500..5626 | 1696842426.6553864-CDS-E_fasciculatus_S2_contig765:5500..5626 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 5501..5626 + |
| 1696842426.668266-CDS-E_fasciculatus_S2_contig765:5763..5826 | 1696842426.668266-CDS-E_fasciculatus_S2_contig765:5763..5826 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 5764..5826 + |
| 1696842426.6825125-CDS-E_fasciculatus_S2_contig765:6267..6430 | 1696842426.6825125-CDS-E_fasciculatus_S2_contig765:6267..6430 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 6268..6430 + |
| 1696842426.7012465-CDS-E_fasciculatus_S2_contig765:6676..6840 | 1696842426.7012465-CDS-E_fasciculatus_S2_contig765:6676..6840 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 6677..6840 + |
| 1696842426.714973-CDS-E_fasciculatus_S2_contig765:7226..7361 | 1696842426.714973-CDS-E_fasciculatus_S2_contig765:7226..7361 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig765 7227..7361 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig765.15813.1 >prot_E_fasciculatus_S2_contig765.15813.1 ID=prot_E_fasciculatus_S2_contig765.15813.1|Name=mRNA_E_fasciculatus_S2_contig765.15813.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=547bp
MSFSVEASSAFHATTDTGTLASLSPSLLPRAPPISLSNRMSRASELRASL VAAAGAEPAASVASSRTGGKSSMTYDELLVGCIAMLGVPGGMRARESLRR VLKAWSEDGDRHDGDDDTPRPTEAARPRRSKQRPSLPLEARGGASTSTTT AAGHSATDRSSLLLAVRGSQMDSSANNDRRLAVAEAAAARWEKRYNQQAS ATERALLETRNAKISLREVERVLGEERADAARAAHEAAEAAAEAAEALRE RADAQDEREGGLTAALSESAAHSLQSMAVRERCEKQLRQRLQLSQAKLIE AETEIGELRKAVKAAEKNRSLQPVVVSLGEILKECLASMGLVRGVPDGEF HAMVSVLRDRAEKAATGFLSVEGLHAAAEGARAIDAIRDLRVQLQEALLD ASRQRARRVSADARVKEKEAGEMERTFGKEELLKARKETSETRARLAVAD AEVKQLNKSLKEEQERSAAAWAATRHRSAPIADVRGIFDEGHRLVQEKMK LKAQQIQQEVSQMQQDISEARLREVQDARATPPMPRARPATKSCNT* back to topmRNA from alignment at E_fasciculatus_S2_contig765:2672..7361+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig765.15813.1 ID=mRNA_E_fasciculatus_S2_contig765.15813.1|Name=mRNA_E_fasciculatus_S2_contig765.15813.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4690bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig765:2672..7361+ (Ectocarpus fasciculatus EfasUO2) ATGAGCTTCAGCGTCGAGGCGTCTTCGGCGTTCCATGCAACCACGGATAC
GGGTACCTTAGCCAGCTTATCACCATCCTTGTTGCCCAGGGCTCCACCAA
TATCTCTGTCCAACAGAATGAGCAGGGCATCCGAACTACGTGCATCGCTG
GTAGCAGCAGCAGGGGCAGAACCTGCTGCAAGTGTTGCTTCGTCTCGGAC
TGGAGGCAAAAGTAGCATGACGTACGATGAGCTGCTCGTGGGGTGCATCG
CCATGTTGGGAGTCCCGGGCGGTATGCGGGCGCGAGAAAGCCTGCGACGC
GTTCTGAAGGCCTGGTCGGAAGATGGCGACAGGCACGACGGCGATGACGA
CACGGTGGGTGCAGCAAGTAGCTCCAGCGTGAGACCAGAGCCCTGCGTCT
TGGTGCTCGGATGCAAGAGTTTTGTCTATCACGACCACGCCAAAGGGCAA
ACCAATGTATGGGTGGGTGTCTTGGACTACAGATAATCTGTTTATGTGGG
AATATTAGCTTTAGGGCATTCCTACTTTTTTTCGGACCATTCCGCTGCTC
TACCGTATGTAGGTTGAAATGGCTCGCGCATGCGATCTCCCGTTGAATAT
GCAATACAGTAGTCCCATACATAATTCAGTACGCACTTCCGTACGATACG
AAGGTTCACGAGCATGTACAGAACATCACAGTACGGGTACTTGTTCGAAA
CAACAATGCTCAAAGAGGGATTAAATACGAAGTTTTGTGTATCTGCAACT
GGTTAAAACCATTTTCGGTTGCCTTAAACCAAATCCTTGTTTGCCGTAGC
CGAGACCAACGGAAGCCGCGCGGCCGCGAAGATCGAAGCAGAGGCCATCA
TTGCCATTGGAAGCCAGGGGCGGAGCCTCAACTTCTACGACTACGGCGGC
AGGGCACAGCGCGACCGACAGAAGTTCCTTGTTGTTGGCCGTTCGTGGTA
GTCAGATGGACTCGTCGGCGAACAATGATCGGCGGCTCGCGGTGGCGGAG
GCGGCTGCAGGTGACAGATTAATGAAGAGATCAATATTGTTCCCTCTTCC
CCTCGCACAATATTGATATTTGTTGTGGTATGCATTTCTTGCGTATTTAT
CGTTCAGGGGCTTTAGGGGGGGGGGGGAGGCAGGAGATTTCCGCTCTTAG
AAATAAAGCAACGAAAGGAATAACTAAAAGCTGCTGTTTGTGTCGGTCCA
TGAAGGAAGGTCTTCGTCTATGCGAGGAGAAGGTCTAAGGTGCTGTACGC
GCATGGCTAAACACCCTTGCTAGTTCGGGCGGTTGCAGTCTCACCACTTT
ATGATGCTCGACGTAGACACAACCATGGGAAATACAACACCTACCTCTCT
TTCCTCAAAACAGCTGTTACCCCTCCTTGCGTTTTTCTCCCCCTGACCGA
CCTTGTCACAGCCAGATGGGAAAAACGATACAACCAGCAAGCATCAGCTA
CGGAAAGGGCATTGCTCGAGACGCGAAACGCCAAGATCTCTCTGCGAGAA
GTGGAAAGAGTGCTGGGAGAGGAGCGCGCCGACGCGGCGAGAGCTGCTCA
TGAAGCGGCTGAAGCAGCGGCGGAAGCTGCAGAAGCCCTGCGAGAACGCG
CGGACGCCCAGGATGAGAGAGAGGGGGGACTGACGGCGGCGTTAAGGTCA
CCCTCGATTCCGGTTGTCTTTTTCTCATAGCGAGACGCAGCACATATTCA
CTCCAGCTAGACAATGGTCCAAGCTTTGGTGATGGAAAGTAGAGCTGTTA
CTGTTTACCACCACTGTGAATGCAGCAACTCACTCGTGTTTGGAGCCCCG
GACATCACTGCCCATACCGCTATCTTCGCCACCCGCTGCCACACCTCTTT
TTTGTCGTGCCCATTCCACTCTCCCATTCCCCCTACTGCCCCTCCTTCCC
TACATCTCTCAGCGAGTCCGCGGCGCACAGCCTACAGTCAATGGCGGTTC
GCGAGCGATGCGAAAAGCAGCTACGACAGCGTCTGCAGCTCTCTCAGGCA
AAGCTCATCGAAGCTGAGACGGAGATAGGAGAATTGCGCAAGGTGAGCAA
ACAAATCCAATCCCAGGAGAAACGACGGAACGTACAAAGTGTGCCGTCGT
TGTCTACCTAGGCTTAGGAAGGCATGCCTTTGTGGTTGGTCATAGCCTCC
TCACGTTATGGGGAAACCAAAGCACCCATGTGCCAGCGAATAAAGCCGTG
TTCCCCACGTACTCTTGATGCCTGACATACGTTGACGCGCTCGCTTTCTC
TCTGTCTTGCTTTTTGACGCAATTTACTACCCACCAACGACGGCGACCGG
TGAATGAACTGATCGACCCAACAGGCTGTCAAGGCGGCTGAAAAGAACCG
ATCGCTTCAGCCGGTGGTTGTCAGTCTCGGGGAGGTAAGATCCCTGGACG
GTAGCACTTTCTTTCGAGACATTGCACACAGTTTCTTTCGTGCACAAGGC
GCCACACGAGAAGCTTTTCGCCTTTCTCTTCTGTCTTCGAGTGCTGTGCG
ACAGGCCCACCAACATTTCAGGGCACAGCAAGCTCTCTCGAAAACCTGCC
CAAGCGTTGTATATATTACGAACAGTGAACTTCTTGTGTGTCTCCGGCAG
GGTGCCAGAGGTCGCATGTCTACTTCAGAAAGAAAGCGGCTTGATACCTA
TGATGTATTGGCATGTCCACAGTAATTTCTCACCTCTCGTTCGTGAAGAA
GACATGTGCGGCCTGAGTCGCGGCGCGCGCACACCGAACTCGAACGATAC
CTGCAGGAGAAAACCGTGCCTCTCTGACTCAAGGCCATCGACATTGACTC
GCCTTTCCGATGCCGCCAACGCTACGCAGATTCTCAAGGAGTGTCTTGCG
AGCATGGGATTAGTGCGTGGTGTGCCAGACGGGGAGTTCCATGCGATGGT
GTCGGTATTGCGCGACCGGGCCGAGAAGGCCGCGACAGGATTCTTATCAG
TCGAGGTGTGGTGGTGTGGTCGCACGGCAATTCGTTGTCGTTTACCACAG
ATACATGCTTTGTTGGAGCGTTTGAGAGCCTTCAACCCTACCCCGACACA
CACCCCACCCCCTATCCTCGATTTGTTCGACTTGACACAAAGGGCCTTCA
CGCTGCTGCGGAAGGGGCGAGGGCTATAGATGCTATTAGAGATCTCAGGG
TGCAGGTGAGAATGTGTGGGGCATATCAGGACGCAATGACACAGTAGCGC
GTTTGACGACGTTCTTACACTGTCTCTAGATCTCGGCGCAGGCATCCGCT
GTAAGGATCCAGAACTCACTGCAACATCCTCTCCACATGCCTGCCGACAA
TGCCGACGGCCTGAAATTTTTCGTTCCCTCCTTTTCCGTCTTGCGCAATC
ATGCACGACTATACCCCCTCTCCTACCGGCCTCGCTCCATGCATGGCTGT
TGGCAGACATGAACACTCCGTCATCTTGAAGGTGAAATGACCACAAAAGT
TTACAAGTGTTCATCTCGTGCTTCTTGCTCGCCCGACGATTGACTTGGCG
AGACTAACGAGAGACTACTCCCTCGCGAAGAGGCCATGTCAAACCTCCCA
AGCATTAGAAAACCCCCTTCGTCGTTGCGACCCCATGCAATGTCAGCTGC
AAGAAGCTTTGCTGGACGCAAGCCGGCAGCGAGCCCGCAGGGTGTCTGCG
GATGCTCGAGTCAAGGAAAAGGAGGCGGGCGAGATGGAGAGGACTTTTGG
GAAGGAGGAGCTGCTCAAGGCGCGCAAGGAGACGAGTGAGACGAGGGCTC
GCCTGGCAGGTACGGCGAGAGGTGGTTTTGGCCTGACTGACTAACAGTGC
GTGCCTTTGCTGTTGTTGTTGGCGTTTGCGAACCCAGTGTCGGTGTTGGT
CTTGGTGCTGCCGCCGGTGCTGTCGGTTTCGATTGTTCTTGGTTGCTGTG
ATATTCGTTGCTGTCGTTTTTTCTGATATTTTCTCAATGTTCGTCTAGCG
TTTGAAATCAGCACGTTCGTTCACATATTTTTCATTCGCCCTTTGTCCCT
CGCAGTTGCAGACGCAGAGGTGAAACAACTCAATAAGTCCCTTAAGGAAG
AGCAGGAGAGATCGGCGGCGGCATGGGCTGCCACTCGCCATCGCTCCGCA
CCGATAGCAGACGTCCGAGGCATCTTCGACGAAGGTCACCGCCTAGTACA
GGAAAAAATGAAACTCAAGGTGTGCAAGGAACCTCGAAACATCTTCTGAA
ATAATGATCTGAAGTGCTTTGGCACACGAGGGAGGGAGGGATCCTTTGAT
GAGTCCGAGCGAAAAGTGGTCAATTCGGCTTTGCGGGTGGGAAACACCTG
TAGCTTGCAAATTTACGAAGCCTTTTACCTAGGCAACAAGCTCATGCCGA
TCCCTTCGTGAAGAAATGGCTTTTTCTGAGAAACGTTACCGGAATCATCG
ACATGAAACAGTAGGCGGGACTCGAAATCGCCCCTGTCCTGCTAACCGAA
AGTGCAATCCGTTGCTCGACATTCCTTCCCCCGTCGTATCTTGACTCACG
GGCGACACTAAATAGCTACCGCCTCGTTTTTCTTACCGTCTTCCATCTTG
AACAGGCCCAGCAAATCCAACAAGAAGTGTCGCAGATGCAGCAAGACATC
TCCGAGGCGAGGTTACGAGAGGTTCAGGACGCACGTGCGACTCCACCCAT
GCCGCGAGCACGACCAGCAACGAAGAGTTGCAACACGTAG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig765:2672..7361+ >mRNA_E_fasciculatus_S2_contig765.15813.1 ID=mRNA_E_fasciculatus_S2_contig765.15813.1|Name=mRNA_E_fasciculatus_S2_contig765.15813.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1641bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig765:2672..7361+ (Ectocarpus fasciculatus EfasUO2) ATGAGCTTCAGCGTCGAGGCGTCTTCGGCGTTCCATGCAACCACGGATAC GGGTACCTTAGCCAGCTTATCACCATCCTTGTTGCCCAGGGCTCCACCAA TATCTCTGTCCAACAGAATGAGCAGGGCATCCGAACTACGTGCATCGCTG GTAGCAGCAGCAGGGGCAGAACCTGCTGCAAGTGTTGCTTCGTCTCGGAC TGGAGGCAAAAGTAGCATGACGTACGATGAGCTGCTCGTGGGGTGCATCG CCATGTTGGGAGTCCCGGGCGGTATGCGGGCGCGAGAAAGCCTGCGACGC GTTCTGAAGGCCTGGTCGGAAGATGGCGACAGGCACGACGGCGATGACGA CACGCCGAGACCAACGGAAGCCGCGCGGCCGCGAAGATCGAAGCAGAGGC CATCATTGCCATTGGAAGCCAGGGGCGGAGCCTCAACTTCTACGACTACG GCGGCAGGGCACAGCGCGACCGACAGAAGTTCCTTGTTGTTGGCCGTTCG TGGTAGTCAGATGGACTCGTCGGCGAACAATGATCGGCGGCTCGCGGTGG CGGAGGCGGCTGCAGCCAGATGGGAAAAACGATACAACCAGCAAGCATCA GCTACGGAAAGGGCATTGCTCGAGACGCGAAACGCCAAGATCTCTCTGCG AGAAGTGGAAAGAGTGCTGGGAGAGGAGCGCGCCGACGCGGCGAGAGCTG CTCATGAAGCGGCTGAAGCAGCGGCGGAAGCTGCAGAAGCCCTGCGAGAA CGCGCGGACGCCCAGGATGAGAGAGAGGGGGGACTGACGGCGGCGTTAAG CGAGTCCGCGGCGCACAGCCTACAGTCAATGGCGGTTCGCGAGCGATGCG AAAAGCAGCTACGACAGCGTCTGCAGCTCTCTCAGGCAAAGCTCATCGAA GCTGAGACGGAGATAGGAGAATTGCGCAAGGCTGTCAAGGCGGCTGAAAA GAACCGATCGCTTCAGCCGGTGGTTGTCAGTCTCGGGGAGATTCTCAAGG AGTGTCTTGCGAGCATGGGATTAGTGCGTGGTGTGCCAGACGGGGAGTTC CATGCGATGGTGTCGGTATTGCGCGACCGGGCCGAGAAGGCCGCGACAGG ATTCTTATCAGTCGAGGGCCTTCACGCTGCTGCGGAAGGGGCGAGGGCTA TAGATGCTATTAGAGATCTCAGGGTGCAGCTGCAAGAAGCTTTGCTGGAC GCAAGCCGGCAGCGAGCCCGCAGGGTGTCTGCGGATGCTCGAGTCAAGGA AAAGGAGGCGGGCGAGATGGAGAGGACTTTTGGGAAGGAGGAGCTGCTCA AGGCGCGCAAGGAGACGAGTGAGACGAGGGCTCGCCTGGCAGTTGCAGAC GCAGAGGTGAAACAACTCAATAAGTCCCTTAAGGAAGAGCAGGAGAGATC GGCGGCGGCATGGGCTGCCACTCGCCATCGCTCCGCACCGATAGCAGACG TCCGAGGCATCTTCGACGAAGGTCACCGCCTAGTACAGGAAAAAATGAAA CTCAAGGCCCAGCAAATCCAACAAGAAGTGTCGCAGATGCAGCAAGACAT CTCCGAGGCGAGGTTACGAGAGGTTCAGGACGCACGTGCGACTCCACCCA TGCCGCGAGCACGACCAGCAACGAAGAGTTGCAACACGTAG back to top
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