mRNA_E_fasciculatus_S2_contig7649.15812.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7649.15812.1
Unique NamemRNA_E_fasciculatus_S2_contig7649.15812.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7649.15812.1 vs.
Match: CBS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.570e-22
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 GATPAHNDAGGIGSLFWKRSFSKNSRRSTERPASSSTSDPSFTSSGSSSVIHLGRLRIPQSRRLDLAT 204
            GA+PAHNDAGGIGSLF KRSFSKN+RRST RPASS        SSG+SSVIHLGRLRIPQSRR+DL T
Sbjct:   69 GASPAHNDAGGIGSLFLKRSFSKNTRRSTARPASSXXXXXXXESSGTSSVIHLGRLRIPQSRRVDLTT 136
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7649.15812.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
CBS2.570e-2277.94domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7649contigE_fasciculatus_S2_contig7649:2357..7264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size215
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842426.5441113-CDS-E_fasciculatus_S2_contig7649:2356..25321696842426.5441113-CDS-E_fasciculatus_S2_contig7649:2356..2532Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7649 2357..2532 -
1696842426.5543835-CDS-E_fasciculatus_S2_contig7649:7227..72641696842426.5543835-CDS-E_fasciculatus_S2_contig7649:7227..7264Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7649 7228..7264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7649.15812.1prot_E_fasciculatus_S2_contig7649.15812.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7649 2357..7264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7649.15812.1

>prot_E_fasciculatus_S2_contig7649.15812.1 ID=prot_E_fasciculatus_S2_contig7649.15812.1|Name=mRNA_E_fasciculatus_S2_contig7649.15812.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=71bp
GATPAHNDAGGIGSLFWKRSFSKNSRRSTERPASSSTSDPSFTSSGSSSV
IHLGRLRIPQSRRLDLATQR*
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mRNA from alignment at E_fasciculatus_S2_contig7649:2357..7264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7649.15812.1 ID=mRNA_E_fasciculatus_S2_contig7649.15812.1|Name=mRNA_E_fasciculatus_S2_contig7649.15812.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4908bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7649:2357..7264- (Ectocarpus fasciculatus EfasUO2)
GGTGCCACCCCTGCCCACAACGATGCTGGCGGAATCGGTGAGAGAGAGGG
CAAACGCAGGCGACGGAATCGCTGCTATGAGGCTTGTGTGCTGGATGGAT
CAATCCCCACGCGTTCGTTGAAATCAGCTGTGCCGCTGCCTTTGTCATAC
ATTCGCAGCATCATCCCTCCTCCCGGCTGATGGCTTGATTTTGTTCTCGG
CAAAACTTGCAGGACCGAATACACGCGCGTACACCGCGAGCAAGACATTT
TGCAATTGGCACATCTGATGTGCCATGCAGTATAAGCGAAATCCTTCAAC
AACGGTCGCTGTTGCAGTCGTTGCGCCTTTATTCGGCCCTGGTCGTCGCT
GTCGTATGATGCCTCTCCTATCCCCATCCCGATACAGCGAGCTCGTCATC
GACAGCAACAGCAACAGCAGCAGCAGCAGCAATGCAGCATGGGACAGAGC
ATGAAAGACTCACAATATACTCAATTGCTGATGTAGCCGTTTCCTTTCCC
CACTGACGGCGGTAAAGACTTCATTCAACACATCCCTTGTCTGGGGCATT
ATCATCACGAAAAAACCGACCTCTTTGTCAATGATTGCGATTGTGCCGCA
CCCTTGTCCTCCTCTCGGCGGGATGCCGTCGGTTGCGTTAGATACGTTAG
ATACCACACCCCCTTGACCGACATTCAAAGCTCGCTAACCTCTCCAGCAA
ACAAAAACCATCAGCAGTGACGGTGCCTGCCGAAATGTTGGCGGAAATCG
TTGGAACCGAACCGTCTCGTCGAGAGCTTCCCGAAACGCACAAGACGGCA
GAGACGAAGGAGTTGAAATCTAAATTTACCGAGTGTTGCGAGGATCAGAA
GAAAATGTTAATGTTCGACCGATTGGCCAATCAGAAGAAGGCAACACGCA
GCAGTACAGCTAGCGCCAGCGCTTAAGACCCTGTGAGTTAAGAAATTCAG
GCTCAAAATTTAGGAACTTGGCCAGATGAACACGTGCTCAGTCAAGAACT
GCAGAGCATTTTATTGTGAAGAGGCGTGAAGACATACAACCGATTGGCCA
ATCAGTAGCAGGCAACATGGAGTACAGCTAGCGCCAGCACTTGAGAATCT
GGGAGCTAAGAAATTCAGGCTCAAAAACGTAGGAACTTTAGAACCTTGGC
CATGTGAACACGTGCTCAGTCAAGAATGCTACACTAAGAAGCTGGTATAT
CGTCGCTGTTGGGATACCCCATAGAGAGGATAAGAAGCGACCCTCGGCCA
AACATACATGTGGTTCTAGCGGTATCGGAAGTGAGACAGAGATTGGTTGT
CTTGGTGTGCCCTTGCTGGTCTGTCCCAAGCAAGAAAGAGAGCGTCGAAT
CTACTATACTGCAGCAAGAAGCTATTTCGGAAATCAATTACTATCTTCGT
GGGGTCATCGCGTTGGTGATCGAATTGACGCTTCGCATGCAGTAGGTTGC
ATGATGAGATACCACACCCCCTGGACAGATTTACAAAGCTCTATCGATTA
TGTACTCGGACGACGAATAGGATGCCACAACCGAACGATACGTTTTCGGG
AAGCTCTCGATGAGGCGGTTCCAATCCCGCCACTTCGGCACTACTGTCAC
CGTTCTTGCTGCAGAGCACTCGAGCTTTTGAAAACCGGTCCCGGGGGTGT
GGTATCTTACGCAACCTACAGCAGTCCGTGGACCGAGTGTGTCCGATTCG
ACCGACGATTGGTCGCAAGCGAGTTGAAGATGGCGTGAGAGGAAAAGTCG
GAAGAAGCCGTGTGAGGCCGCTTGGCGTAGGCTGAAGCGGTGCTGATGGC
AGCGAGGCGAATCCGTCCTTTAGGCGTTGAGTGTAGTCCGGCATATCAGA
GGGGGGCGCCATCTCCAGCGGTGGCTGATGCAACGGTGGCAGCGGCGCAA
GATACCACAACCCCTGGACCAATGCCCAAAGCTCGATTACTCCGCAATAG
ATGGGGTGCCGAAATGGCGGGGTTGGAACCGTCTCGTCGAGAACTTTCCG
AGATCTTTCCGAAACACATTTTTTTACGTTGACACCCTCCTCGTCGTGGA
GCAATTGAGTTTTGAAAATGGGTCCCAGGGGGGGGTGGTATCTTGTGTCA
CCTACGGTAGTCGTGCTGCTGCCTCTGGGGCTGCATCCTCATTGCTACTG
TCCGCATGTGGAGCGGCAGCTAGCGTCGGACCGCAAGATCCGGGTCATTC
CGGATTTTTGGATCCGGAAGGTGCGGATCATTCCGGATTTGCGGATTCAG
GAGAGGTCAGTCAGCAAGCGCGTCCGCCCCTGGAAGACGGTTGTGTCCAC
TGTAATCCGACGACTCGGATGATGGCTCATATGCCGGTGGGCGCTGGGTT
GCCCTACAAGTAAGAGGCGGAGATGTGTCACCCCCCTGGACCTATTTTCA
AGGCCCGATTGCTCCACCACCAAGCTTGTGCCAGCACCAACAATGTGGTT
TTTGGAGACCTCTCGCCGAGGGCTTTCCATAGACGTATCGGGCTACTCCC
GGGACTCCTTGGCTGTAGAGCAATCTATTGAGGTTTGAAAGTCGGTCTAG
GGGGGGTGCCATATCTCCGCCTCTTGCGGTATACGGTACGGTATACGGTG
CGGTAAGCCATGCACCCCCTTGGTTGTGGAACAATCTATTGAGCTTTGAA
AGTCGGTCTGGGGGGGTTGTCATCTCTCCGCCTCTTCCGGTATACGGTAC
GGTATACGGTGCGGTAAGCCATGCACCCCCTTGGTTGTGGAGAAATCTAT
CGAGCTTTGAAACTTATTCTAGGGGGGTTGTCATCTCTCCGCCTCTTTCG
GATATTGCCCCGCGAATAGAAGGTCCGTCTGCGGGCGGCAAACAAGGCGA
ACAAACTTCCCACCTCCAACAGGACGAGGATAACATATATAACATGTTGG
CGAAATTGTCCGCACTGGAAGATGAAGGCTATGCTGCCTGCCGGCCCAGC
GCCAGCGTCGTTGTCGTTGTCGTCGGGGGGGGAGGGGCGAGTTCCGCGTC
GCAGCAGGAGGAAAAGGAGTGGGCAGGGATAAGCTCCAATTTTTCAAGCT
TTTAGGTACAATTCGGACGGTGTCGGGTCTGCGACCGGGCAACGTGGGCC
GGTAACGCCAAACTTTGGAGCTGTTTGGGTCGACCAGACGGTGTGGGCTC
TACAGCCGGGCAGCGTGGGCCGGACTCACCATATTTTTTTGAGCTTATAG
GCACAACCAGCAGACGGTGTGGGCTCTTCGGCCGGGTGGCGTGGGCCGGA
TGGAGCCTTCTCCGACAAAGGAAGCTCTACAGAGCCTGATGGCGGTTGCG
GTTTCAAGTCGCCGGCGCTGCCCTCTCACTCAGCTTCGCGCCTTCTCCGA
CTTGAATGCCATGGACTTTCTGGCCCATCAGAACCGGAGAAACAGCGGTT
TGTTGCGGACGATTTCGACGCTTTTTGTTCCGCGGTGCTGCCTCTGTTGA
AGCCTGGTCTCAACCCCGATCAGGATGCGGAAGCGAGGTCTCAACCCCAA
GAGAGAGAGAGAGAGAAGTGATCCCTTATCCTAGTGGGGCCACCTACGTC
TCTCTCCTCGGGAAGATGTTCCCTCCCTTAAGCCTAGCAGCTTCATCTTC
CTCTTGGGGTACGCTCCTCACGGCACACGCTCGTGGCTGTAGTTACGGTA
CACCTGGCATGTGCTACCATGTGCGGGCACTGCTGTTCCCCACGCGCATA
GTGAGCAAACTAAAGAGGACGAGAAGAGCAGAAAAAAAAGGGGACGAAAG
GGAAAAAACGGCCAAAAGACGAGTCCGGCCGGACTCGAACCGACAATATC
TGCCTTCGAAGGGCAGCGGCTTATCCATTAGCCTACGGACCCGACGTGAT
GCTACATTATGCAGGCAGCATCCCACGCGTCCGTACCTACAGCCACGAGC
AGGGGATCGCGTCCCACGAGGAAATAGCTGCTGTTGTAGGTCCGAGAGAC
CACATCCTGCTCGGGGATGAGACAAAACTTCAAAACTTCAACAGCTGTAT
GATCGTGGAACACAGAACATCGGAGTTGTCGGAAACGACCGGCGTTTGCC
CGGTACCCATGGGGCCGGAAAGTTTCAGAAAGTTTCAAGATATTTGAATA
TTCGGTCCAGGGGGTGTGGTATCTTACGCAGCCTACCCCCCAGACCCGAA
CTCGTCACCCCCTCCAAAATAGTACTTACCTGGTATTCTTCCTGTGATGT
TTTTTTTTTTTTCTTGATAAGGACACACGAATCCATCTCTATCTTGTAGA
AATGAGTCCAAGATTGATTAGCAATGAATCCATAGCGGCAGTGGAAGCAA
CCTGTACTTGCACGACTTCGTGAGACACAGCGTTGTCTCCAAACTCTTGT
GAAATACTTAGCGTTGTGCGGGGTATTTTTTTTTTTGTGCCGGGGGCGAC
GCTGTTTTATTTTGTGAGATGACCATGGAAGGTGTCTGCGTCAGGTTTTG
GAGAAACAATGAAACAACGACTAGTACAACAAGCAACATACATTGCATAC
ATCCCAGCCGCCGGTGATTTGATTCATCCAACAGCAACATGATCATTGTA
TGCATACACATCCCAGCAGCAGTCAGTGATTTGATTCGCCCAGCAGCAAC
AAAATCATTGTATGCACCCATCACCGCAGCAGTCGGTGGTTTGATTCGCC
CAACAGCAACATATGCACATCACAGCAGCAGTCAAGTGGTTTGACTCGCC
CGGCGCAACTTTTGTTTCCCCGTACCGTACAGGCTCTCTGTTCTGGAAAC
GAAGCTTCTCCAAGAACTCCCGCCGAAGCACAGAACGACCAGCATCATCA
TCGACGTCTGATCCGTCGTTTACATCATCCGGCAGTTCGTCTGTGATACA
CCTGGGGCGGCTGCGAATACCTCAGTCGCGAAGGCTCGACCTCGCCACTC
AAAGGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7649:2357..7264-

>mRNA_E_fasciculatus_S2_contig7649.15812.1 ID=mRNA_E_fasciculatus_S2_contig7649.15812.1|Name=mRNA_E_fasciculatus_S2_contig7649.15812.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=213bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7649:2357..7264- (Ectocarpus fasciculatus EfasUO2)
GGTGCCACCCCTGCCCACAACGATGCTGGCGGAATCGGCTCTCTGTTCTG
GAAACGAAGCTTCTCCAAGAACTCCCGCCGAAGCACAGAACGACCAGCAT
CATCATCGACGTCTGATCCGTCGTTTACATCATCCGGCAGTTCGTCTGTG
ATACACCTGGGGCGGCTGCGAATACCTCAGTCGCGAAGGCTCGACCTCGC
CACTCAAAGGTAA
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