mRNA_E_fasciculatus_S2_contig7647.15809.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7647.15809.1
Unique NamemRNA_E_fasciculatus_S2_contig7647.15809.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7647.15809.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7647contigE_fasciculatus_S2_contig7647:5114..7157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1332
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_007790.1
Cds size1332
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842426.3599901-CDS-E_fasciculatus_S2_contig7647:5113..57851696842426.3599901-CDS-E_fasciculatus_S2_contig7647:5113..5785Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7647 5114..5785 -
1696842426.3705838-CDS-E_fasciculatus_S2_contig7647:6337..67391696842426.3705838-CDS-E_fasciculatus_S2_contig7647:6337..6739Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7647 6338..6739 -
1696842426.3796942-CDS-E_fasciculatus_S2_contig7647:6899..71571696842426.3796942-CDS-E_fasciculatus_S2_contig7647:6899..7157Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7647 6900..7157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7647.15809.1prot_E_fasciculatus_S2_contig7647.15809.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7647 5114..7157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7647.15809.1

>prot_E_fasciculatus_S2_contig7647.15809.1 ID=prot_E_fasciculatus_S2_contig7647.15809.1|Name=mRNA_E_fasciculatus_S2_contig7647.15809.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=444bp
MDSDSNLEDELEAELLLDPEQIPPSLSTPRQRLEDARATARASIERCPAD
DARGKTNTCTAVDGDTGWRHRCSLSAEEDSSKDLLQRLSSDVADNGKWGC
LHKINIESQDTLAAMNETLGSLRQWREQRGIDPRTTHPEGTPNNSAEMSL
PPGLNPKPHSNPSLPETMRNWPRRDSDGNLAPPLLHDVAHDTDSCGESRK
QFSGTEVVGGAQDPLVALWQEHHLRAQQAVGRLQEQLKHHATYPASRPTE
SMSIAAADVVGDGKTNVNAGKIRKEALLIQGLRTRGGKYELPSKFSLSSS
GSGGEKSSNEDRVSELHRDVDGLEMNQWIQHTRIKACDRAEALAREACDD
IWQGTGSAAVGRIEGDLDSFAKDLDVLLLRLGLDGDDRGDEIGQEEGNGV
GSEVVGDAIVVEEYHVDEEERRAPVADAHVGRRAAPDSGEQQP*
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mRNA from alignment at E_fasciculatus_S2_contig7647:5114..7157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7647.15809.1 ID=mRNA_E_fasciculatus_S2_contig7647.15809.1|Name=mRNA_E_fasciculatus_S2_contig7647.15809.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2044bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7647:5114..7157- (Ectocarpus fasciculatus EfasUO2)
ATGGACAGCGACAGCAATCTGGAAGATGAGTTAGAGGCGGAATTGTTGCT
GGATCCCGAGCAGATCCCACCATCGCTGTCGACCCCTCGGCAACGGCTGG
AGGATGCGAGGGCTACGGCTCGCGCATCGATTGAACGCTGCCCCGCCGAC
GATGCAAGAGGGAAGACGAACACGTGCACTGCTGTAGATGGCGATACTGG
CTGGAGACATCGTTGTTCGTTGTCGGCCGAGGAAGACTCGTCAAAGGACC
TGTTGCAGGTATGCATGCAACCAGGGTGATTTTTTGTACAAGGCCAGACT
CGACATGTTGTGGTCATAGTTGCACGCAGCATCTGGGGAGCACCGCCTGG
TAGGCACTTCGGTCGGTCAGAGCACCTGACAGCTCGCTGAATCTCACCTA
TGCGCGCTGCTTTTGCAGAGACTTTCCAGTGACGTGGCAGACAACGGCAA
GTGGGGGTGCCTTCACAAGATCAACATCGAGAGCCAAGATACCCTCGCAG
CGATGAACGAGACCCTAGGATCCCTTCGCCAGTGGCGAGAGCAGCGCGGT
ATCGATCCAAGGACCACCCATCCTGAAGGCACACCAAACAACTCAGCCGA
AATGTCACTACCCCCCGGATTAAACCCGAAACCTCATTCGAACCCTTCGT
TGCCGGAGACAATGAGAAATTGGCCGCGGAGGGACAGCGATGGCAACCTC
GCACCACCATTGCTCCATGATGTTGCCCACGACACCGACTCTTGTGGCGA
ATCCAGAAAACAGTTCTCTGGCACAGAGGTCGTCGGTGGCGCGCAGGATC
CTCTTGTTGCCCTGTGGCAGGTAACGATGTAGGTGATGGGGTGCCAAATG
GTGGTACAATTGGCATGGCGCAGAGGTTATCCGAGCTGCTGTTGCTACAG
AATTGGCACGGCATGATAAGCTATTCACGTTGGACGGCGGTTATGCACTT
CTATGTGTAAGGACCAGCTCACACTGGTTATCCAGCGCCGTTGTGGCAAT
GGACCATACAGAGAAGAAAAAACAGGGTCTGGCTTCCACTAGCAAACGGG
GTCCCCCAGGAAGAACCACGAGATACATCCCAGTTGTCTTGTGTTTGCCC
CTGAAACATCACAGGCGGGGCACCGAATCTTGTCTCAATTTTGACATTTC
TCTTGCCAGGGGGCGCCGCCAACAACAATAGGCGCTCATGTCAATGAGCT
ACCAAGACAAGGCTTCTACAGCAGTAGTGGGGAGGAAGCTCTTTCGTTGC
TTGCACACCTCTTGATCATCCTGCCGACGAACAACCGAGTTGCATACACG
CAGCAGCATGTCGTGTTCTGTTGTGGAATGTCCAACGCGTGCCTGCTGCA
ACCGACGCACTTGTACTTGTAGGAGCACCACCTTCGGGCGCAACAGGCGG
TCGGGAGACTCCAAGAGCAGCTAAAGCACCATGCCACCTACCCCGCATCA
CGACCGACGGAAAGTATGAGCATTGCCGCCGCCGACGTTGTCGGTGATGG
TAAAACTAACGTCAATGCGGGAAAAATACGCAAAGAAGCACTGCTTATTC
AGGGTTTACGGACCAGAGGAGGAAAATATGAGCTACCCTCGAAGTTTTCC
CTCAGCAGCAGTGGTAGTGGCGGCGAGAAAAGCAGCAACGAGGACCGGGT
ATCAGAGCTCCATCGAGACGTCGACGGCCTCGAGATGAACCAATGGATCC
AGCACACGAGAATCAAGGCGTGCGATCGCGCGGAGGCTCTTGCCCGCGAG
GCGTGCGACGACATCTGGCAGGGCACCGGGTCTGCTGCGGTCGGGCGAAT
AGAGGGAGACCTCGACAGCTTTGCGAAGGACCTCGATGTGCTGCTGTTGA
GATTGGGCCTTGACGGCGACGATCGTGGCGATGAAATAGGACAAGAAGAA
GGAAATGGTGTAGGAAGCGAAGTAGTAGGTGATGCCATTGTGGTGGAGGA
GTATCATGTTGATGAGGAAGAGCGGCGTGCTCCCGTGGCAGATGCACACG
TCGGCCGCCGGGCAGCACCAGATTCGGGCGAACAACAACCATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7647:5114..7157-

>mRNA_E_fasciculatus_S2_contig7647.15809.1 ID=mRNA_E_fasciculatus_S2_contig7647.15809.1|Name=mRNA_E_fasciculatus_S2_contig7647.15809.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1332bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7647:5114..7157- (Ectocarpus fasciculatus EfasUO2)
ATGGACAGCGACAGCAATCTGGAAGATGAGTTAGAGGCGGAATTGTTGCT
GGATCCCGAGCAGATCCCACCATCGCTGTCGACCCCTCGGCAACGGCTGG
AGGATGCGAGGGCTACGGCTCGCGCATCGATTGAACGCTGCCCCGCCGAC
GATGCAAGAGGGAAGACGAACACGTGCACTGCTGTAGATGGCGATACTGG
CTGGAGACATCGTTGTTCGTTGTCGGCCGAGGAAGACTCGTCAAAGGACC
TGTTGCAGAGACTTTCCAGTGACGTGGCAGACAACGGCAAGTGGGGGTGC
CTTCACAAGATCAACATCGAGAGCCAAGATACCCTCGCAGCGATGAACGA
GACCCTAGGATCCCTTCGCCAGTGGCGAGAGCAGCGCGGTATCGATCCAA
GGACCACCCATCCTGAAGGCACACCAAACAACTCAGCCGAAATGTCACTA
CCCCCCGGATTAAACCCGAAACCTCATTCGAACCCTTCGTTGCCGGAGAC
AATGAGAAATTGGCCGCGGAGGGACAGCGATGGCAACCTCGCACCACCAT
TGCTCCATGATGTTGCCCACGACACCGACTCTTGTGGCGAATCCAGAAAA
CAGTTCTCTGGCACAGAGGTCGTCGGTGGCGCGCAGGATCCTCTTGTTGC
CCTGTGGCAGGAGCACCACCTTCGGGCGCAACAGGCGGTCGGGAGACTCC
AAGAGCAGCTAAAGCACCATGCCACCTACCCCGCATCACGACCGACGGAA
AGTATGAGCATTGCCGCCGCCGACGTTGTCGGTGATGGTAAAACTAACGT
CAATGCGGGAAAAATACGCAAAGAAGCACTGCTTATTCAGGGTTTACGGA
CCAGAGGAGGAAAATATGAGCTACCCTCGAAGTTTTCCCTCAGCAGCAGT
GGTAGTGGCGGCGAGAAAAGCAGCAACGAGGACCGGGTATCAGAGCTCCA
TCGAGACGTCGACGGCCTCGAGATGAACCAATGGATCCAGCACACGAGAA
TCAAGGCGTGCGATCGCGCGGAGGCTCTTGCCCGCGAGGCGTGCGACGAC
ATCTGGCAGGGCACCGGGTCTGCTGCGGTCGGGCGAATAGAGGGAGACCT
CGACAGCTTTGCGAAGGACCTCGATGTGCTGCTGTTGAGATTGGGCCTTG
ACGGCGACGATCGTGGCGATGAAATAGGACAAGAAGAAGGAAATGGTGTA
GGAAGCGAAGTAGTAGGTGATGCCATTGTGGTGGAGGAGTATCATGTTGA
TGAGGAAGAGCGGCGTGCTCCCGTGGCAGATGCACACGTCGGCCGCCGGG
CAGCACCAGATTCGGGCGAACAACAACCATGA
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