mRNA_E_fasciculatus_S2_contig7635.15798.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7635.15798.1
Unique NamemRNA_E_fasciculatus_S2_contig7635.15798.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7635.15798.1 vs.
Match: Kinesin (motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH57_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.360e-78
Identity = 172/210 (81.90%), Postives = 178/210 (84.76%), Query Frame = 2 
Query:    2 STGSHDEAAAAAGAMEELQRELREAREALRAEEDGRARLKEQMLAGVAKFRALEAQEKATRERLEEAGAGQRGAVSAALKRKEKDHERELKFLKEENVQLFKEIGEWKSKADKLTADLDDLREKLAAAQTAQQVPPSASKKRALGDRTNNTPAKATA--AVTGKLGSAXXXXXXXXXXXXXXXXXXAASRALLDGEGPVNDEGAGECNQS 625
            STGSHDEAAAAA A+EELQRELRE REALR EE GRARLKEQMLAGVAKFRALEAQEK+TRERLEEA AGQRGAVSAALK KEKDHERELKFLKEENVQLFKEIGEWK K DKLTA+L+ L+EKLAAAQTAQQ  PS SKKRALGDRTNNTPAKATA  AVTGKLGSA                  AASRALLDGEGP+NDEGAGECNQS
Sbjct: 2595 STGSHDEAAAAA-AVEELQRELREVREALRVEEAGRARLKEQMLAGVAKFRALEAQEKSTRERLEEAAAGQRGAVSAALKIKEKDHERELKFLKEENVQLFKEIGEWKVKTDKLTAELETLQEKLAAAQTAQQASPSMSKKRALGDRTNNTPAKATATAAVTGKLGSAASTTAGGVQPAAAAERR-AASRALLDGEGPINDEGAGECNQS 2802
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7635.15798.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Kinesin1.360e-7881.90motor domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7635contigE_fasciculatus_S2_contig7635:454..3508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score267.7
Seed ortholog evalue4.3e-69
Seed eggNOG ortholog2880.D7FIN0
Model size1739
KEGG koko:K11498
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043515,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0048285,GO:0051225,GO:0070925,GO:0071840,GO:0090307,GO:0098687,GO:0140014,GO:1902850,GO:1903047
Exons3
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0242@2759
Cds size585
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842425.2927797-UTR-E_fasciculatus_S2_contig7635:453..15641696842425.2927797-UTR-E_fasciculatus_S2_contig7635:453..1564Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7635 454..1564 -
1696842425.339859-UTR-E_fasciculatus_S2_contig7635:3465..35081696842425.339859-UTR-E_fasciculatus_S2_contig7635:3465..3508Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7635 3466..3508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842425.3080988-CDS-E_fasciculatus_S2_contig7635:1564..17771696842425.3080988-CDS-E_fasciculatus_S2_contig7635:1564..1777Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7635 1565..1777 -
1696842425.3202758-CDS-E_fasciculatus_S2_contig7635:2548..26801696842425.3202758-CDS-E_fasciculatus_S2_contig7635:2548..2680Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7635 2549..2680 -
1696842425.3304005-CDS-E_fasciculatus_S2_contig7635:3225..34651696842425.3304005-CDS-E_fasciculatus_S2_contig7635:3225..3465Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7635 3226..3465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7635.15798.1prot_E_fasciculatus_S2_contig7635.15798.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7635 1565..3465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7635.15798.1

>prot_E_fasciculatus_S2_contig7635.15798.1 ID=prot_E_fasciculatus_S2_contig7635.15798.1|Name=mRNA_E_fasciculatus_S2_contig7635.15798.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=195bp
MEELQRELREAREALRAEEDGRARLKEQMLAGVAKFRALEAQEKATRERL
EEAGAGQRGAVSAALKRKEKDHERELKFLKEENVQLFKEIGEWKSKADKL
TADLDDLREKLAAAQTAQQVPPSASKKRALGDRTNNTPAKATAAVTGKLG
SAAATTTAGGVQPAAAAERRAASRALLDGEGPVNDEGAGECNQS*
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mRNA from alignment at E_fasciculatus_S2_contig7635:454..3508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7635.15798.1 ID=mRNA_E_fasciculatus_S2_contig7635.15798.1|Name=mRNA_E_fasciculatus_S2_contig7635.15798.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3055bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7635:454..3508- (Ectocarpus fasciculatus EfasUO2)
GAGCACCGGGTCCCACGACGAGGCGGCGGCGGCGGCGGGGGCGATGGAGG
AGCTCCAGCGGGAGCTGCGAGAGGCCCGCGAGGCGCTGCGGGCGGAGGAG
GACGGCCGGGCACGACTGAAGGAGCAGATGCTGGCCGGGGTGGCCAAATT
CAGGGCGCTCGAGGCTCAGGAGAAGGCGACCCGGGAGCGGCTGGAGGAGG
CGGGGGCGGGGCAGAGGGGCGCCGTGAGCGCCGCGCTCAAGAGAAAGGAG
AAGGACCACGAGCGCGAGCTCAAGTTCCTAAAGGTTGGTGTTGTTTTTGT
TTTTGTGTGTACCGTGCTGCGTCGTGAGGGGAAGGGGGTGCTTACTTTTT
TTCGTGCGTCGTGTGGAGGGATGATTATTGGCCTGTTTTTTGCCGGTCCG
CAGTATATTTTCGTGGCGTGTAGATAGCGCGCTGTGGGGGGCTCCAACGA
TATCTATGGGTTGCAAAAGGTCTTTTCATGGGACACATTGAAGCCGAAAA
CCAAACCAACAGGCCAGTCAACACCCAGCATGTTTCCTTTCCAGGGAATT
TTCTGGTGCCAGTTGCTCACCCTGTGTGGTCAACCGTTGGTTGGGTAGGC
GTGACGATTTGGGGGGTGTATCCGTATGCGTAGCGATCAGCACCTCCAAG
TGTTTCATGGAGGTGGTGTTATGTGTGTCTTCAGTACGTTTCGACATAGT
CACAGTAGTAGTCAGCCAAGACATGGCCAACACCAGCGCTACCTAACCAG
GAACCGCTGCTATTGGCAGTCAACATCGTTGAAGGAAAGTTTACGCCTCC
GTTTGTCACTCTTATTCTTCGTCGGCAGGAGGAGAACGTGCAGCTGTTCA
AGGAGATCGGCGAGTGGAAGTCGAAGGCCGACAAGCTCACCGCCGACCTT
GACGACCTCCGGGAGAAGCTCGCCGCCGCCCAGACAGCGCAGCAAGTACC
TCCGTCGGCGGTAAGTTCCTCTTCTTTTCTTATATCTTGCAGTTGGTGTT
GGACTTGTCCTCCAAAAACCCATAAAAATAATATGTCGAAAAAAAGCACC
CGACTTGATTGGGTCGTCATCACTCGTCACATACTAAAGAGGTTTTGGAG
CGGTACCTTTTGTCTGTGCCGCGCGACCTCCAGGGGGGTACATGTGGTAA
ATGCACGAGTGACAAACATACAGCGATGTGTTTGGTTTTGCCGCGGCTTG
CAGCAGGGGAATGTTTGCAGCCGGCGCAGCAACGGTCGCTATGTGGTTCA
GAGAGGTGCTGTGCGTATTTCATGAGCGTAGAGGTAGAGTTTTCGATTGG
GTGCGCTCTTGGGCAGCTACTGTAGAGGGGGGGGTCGTTTGGCTATTTTG
TTGCTTGCTGGGAAGCGCGCTTGAGCCCCGACAAGCCGCGGCTTGGAGCA
GCAGTAACCCCATCATTGATGTGTTTCGTGGTTAACGATAGCCGGTAGTT
TTAAGGCCTGGAACAACCTCATTGTGTCCTCGGAAATCTCTCTGATATGA
TTGGCTGTCGCTCCCCCCCCGTCCCCCGTTGTGAGTATGTTTCTCGCATG
CCCTGAAATCACGCTCCCTTCTGCTACCTCTTCTCTACAGACTGTAGTTA
CCGTATACGTATCTCGCATCCCCCAGCATCTGCTGCCACCTCTCCTCCGT
TGCCGTAGGCTGGCAACCGCGCGCCCTCCCCCCCCTAACACCCGACTTAC
TTGCGCAATTTTCTTGCTGCGTAACCTTCAGAGCAAGAAGCGGGCCCTTG
GCGACAGGACCAACAACACTCCCGCCAAGGCCACGGCGGCGGTTACCGGT
AAGCTGGGGTCCGCCGCCGCCACCACCACCGCGGGGGGGGTGCAGCCGGC
CGCCGCCGCCGAGCGCCGCGCGGCTTCCCGTGCCTTGCTCGACGGGGAAG
GGCCCGTCAACGATGAGGGGGCGGGGGAGTGCAACCAGTCCTGAGTCCGT
CGCGCCGCCGGGGTGTCGGGGGCCGTTAACACTCGTTGTTGGTTACCTAC
ACGGCGGAGGCACCGGCCTTAGCGCGGCAGCGTTCTTGTTTCTCAGACAG
TGGTTGCACAGCCAGGGTGCCGGGGGGGGGTAAAACGCTCGAAAAGAGTG
CACGGCAGTAGAGCTCGCCTGAAGTTTGCGTACAACACAGTCAGGACGGT
TCACGCTGAGCCTTGCCGGGTGCGAAGTTTCAAAGAAACTCTTTCCGAAA
TATTAAAAATAGTCAGCTTGACCAGCGGGTAGGTGGTGGGGTATTTTGTT
TTTGGAGGAATTGAAAAGGGCACGGTTTGGAGGAATAATTGGAAAGGGTA
AGGGTTGTTCACCGAGAATATTTTTATGACTTTCACGCGCTTGTTGTAGT
ACCGCCGTTCTACTGCTACTTCTGCCGTACAACTTGTATCGTCGGTAAAA
CTCAATCCGTTGTACAATAGGTAACTAACATGTTTCGCAGTCCGTTTTGT
TCTTGTTCTTTCTCTCGTGTTTTGTATGAGCGTCGACTTACAACTTTCGT
CCGACCAAGCGTCGGATGTTACCGGTTGGTAGGGCGGTGGAGATGTTCAA
CTTCTGCGAGCAACAAGTATGCAAGCTGCTTAGCTGACACTTGTTTTTGT
CGTGCACTAACGATCTATACGGCAATCAGCAATTTCATGGCCGCACGCAA
TGGTTTTCGTAGGCAGCGTTGAGCGGGGGGGTTAAAAATGCCAAGCTCTA
GATTTTTGCCTGGGGGCATGAGTGATGCGGCACAGACAGGTGGATGGTGG
AGTAGGTTTGTTCTCGAATTGAGTATAGAAGATGGGGGATGGTTGCAAGA
CGTTGAATGAGCTGGGCCACCTTGGAGGGGCTCCGGCGAATGACACAACG
GTTGGCTGCGATGATTCCCCTGCTAATTAGTTTATTAATATCGAGATGAG
ATGCACACACACGTTTCTTTACCGCAAGAAGTCCCAAGACATCACTACAT
ATCACTCCGAGTGAGTGCCGTCTCGTGGAATGGGGGGTACTCTCAAGAGT
TTAGAAGGTTCGTTTTTCCTGTCAGCTTTTAGGTTTTCATCTGTTGTCGA
ACTGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7635:454..3508-

>mRNA_E_fasciculatus_S2_contig7635.15798.1 ID=mRNA_E_fasciculatus_S2_contig7635.15798.1|Name=mRNA_E_fasciculatus_S2_contig7635.15798.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7635:454..3508- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGAGCTCCAGCGGGAGCTGCGAGAGGCCCGCGAGGCGCTGCGGGC
GGAGGAGGACGGCCGGGCACGACTGAAGGAGCAGATGCTGGCCGGGGTGG
CCAAATTCAGGGCGCTCGAGGCTCAGGAGAAGGCGACCCGGGAGCGGCTG
GAGGAGGCGGGGGCGGGGCAGAGGGGCGCCGTGAGCGCCGCGCTCAAGAG
AAAGGAGAAGGACCACGAGCGCGAGCTCAAGTTCCTAAAGGAGGAGAACG
TGCAGCTGTTCAAGGAGATCGGCGAGTGGAAGTCGAAGGCCGACAAGCTC
ACCGCCGACCTTGACGACCTCCGGGAGAAGCTCGCCGCCGCCCAGACAGC
GCAGCAAGTACCTCCGTCGGCGAGCAAGAAGCGGGCCCTTGGCGACAGGA
CCAACAACACTCCCGCCAAGGCCACGGCGGCGGTTACCGGTAAGCTGGGG
TCCGCCGCCGCCACCACCACCGCGGGGGGGGTGCAGCCGGCCGCCGCCGC
CGAGCGCCGCGCGGCTTCCCGTGCCTTGCTCGACGGGGAAGGGCCCGTCA
ACGATGAGGGGGCGGGGGAGTGCAACCAGTCCTGA
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