mRNA_E_fasciculatus_S2_contig7625.15793.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7625.15793.1
Unique NamemRNA_E_fasciculatus_S2_contig7625.15793.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Ribosomal_S10 (domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FM69_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.060e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF 363
            MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF
Sbjct:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF 121          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Ribosomal (protein S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK1_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.500e-62
Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            MS++ K K +  EE+RVHRIRITLTS+NVKNLEKVCADLK GAV+ +LKVSGPVRLPT+KLKIVTRKSPCG GTNT+DRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTI D+
Sbjct:    1 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 119          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Ribosomal_S10 (domain-containing protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397FH44_9STRA)

HSP 1 Score: 194 bits (494), Expect = 5.780e-62
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 1
Query:   16 KGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            K  G   EE+R+HRIRITLTS+NVKNLEKVCADLKKGAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTIAD+
Sbjct:   26 KPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIADS 139          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Ribosomal_S10 (domain-containing protein n=7 Tax=Oomycota TaxID=4762 RepID=G4YYZ2_PHYSP)

HSP 1 Score: 192 bits (488), Expect = 2.490e-61
Identity = 96/120 (80.00%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:    1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 120          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Ribosomal_S10 (domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=H3GAS8_PHYRM)

HSP 1 Score: 192 bits (488), Expect = 2.490e-61
Identity = 96/120 (80.00%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:    1 MSLVNKQKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 120          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Ribosomal_S10 (domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329RI77_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.710e-61
Identity = 97/120 (80.83%), Postives = 109/120 (90.83%), Query Frame = 1
Query:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            MS   K K +  EE R+HRIRITLTS+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:   47 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 166          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Ribosomal_S10 (domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2P5_9STRA)

HSP 1 Score: 189 bits (481), Expect = 7.890e-60
Identity = 93/115 (80.87%), Postives = 107/115 (93.04%), Query Frame = 1
Query:   16 KGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAA 360
            K K +  EE R+HRIRITL+S+NVKNLEKVCADLK+GAV+K LKV+GPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+A
Sbjct:   37 KPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADSA 151          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GMR1_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.620e-59
Identity = 95/120 (79.17%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    4 SAYVKGKGLG---QEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 354
            S Y   K LG   + +A+VHRIRITLTS+NVKNLEKVCADLK+GA++KKLKVSGPVRLPTKKL I TRK+P GEGTNTWDRFEMRIHKR++DLHSP+EIVK+ITSISIEPGVEVEVT+AD
Sbjct:    3 SGYPPKKELGGIVEADAKVHRIRITLTSRNVKNLEKVCADLKRGALDKKLKVSGPVRLPTKKLTITTRKAPSGEGTNTWDRFEMRIHKRLIDLHSPAEIVKQITSISIEPGVEVEVTVAD 122          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I5H7_9EUKA)

HSP 1 Score: 186 bits (473), Expect = 6.630e-59
Identity = 95/119 (79.83%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    4 SAYVKGKGLGQEEA--RVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 354
            +A +K K L ++ A  +VHRIRITLTS+NVKNLEKVCADL +GA EK+LKV GPVRLPTK L+I TRKSPCGEGTNTWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIAD
Sbjct:   10 AAALKSKALDEDPAAAKVHRIRITLTSRNVKNLEKVCADLIRGAKEKRLKVKGPVRLPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 128          
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Match: 40S (ribosomal protein S20 n=6 Tax=Hexacorallia TaxID=6102 RepID=A0A6P8HBZ6_ACTTE)

HSP 1 Score: 185 bits (470), Expect = 1.380e-58
Identity = 94/120 (78.33%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MSAYVKGKG-LGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 357
            MS+  K KG + +EE ++HRIRITLTS+NVK+LEKVCADL +GA EKKLKV GPVR+PTK LKI TRK+PCGEG+ TWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIADA
Sbjct:    1 MSSLYKEKGAVPEEEVQIHRIRITLTSRNVKSLEKVCADLIRGAKEKKLKVKGPVRMPTKYLKITTRKTPCGEGSKTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7625.15793.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosomal_S101.060e-78100.00domain-containing protein n=3 Tax=Eukaryota TaxID=... [more]
Ribosomal1.500e-6282.35protein S10 domain-containing protein n=1 Tax=Trib... [more]
Ribosomal_S105.780e-6285.09domain-containing protein n=8 Tax=Saprolegniaceae ... [more]
Ribosomal_S102.490e-6180.00domain-containing protein n=7 Tax=Oomycota TaxID=4... [more]
Ribosomal_S102.490e-6180.00domain-containing protein n=9 Tax=Eukaryota TaxID=... [more]
Ribosomal_S102.710e-6180.83domain-containing protein n=11 Tax=Phytophthora Ta... [more]
Ribosomal_S107.890e-6080.87domain-containing protein n=3 Tax=Phytophthora ker... [more]
Hypothetical2.620e-5979.17protein n=2 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical6.630e-5979.83protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
40S1.380e-5878.33ribosomal protein S20 n=6 Tax=Hexacorallia TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7625contigE_fasciculatus_S2_contig7625:3566..4793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score234.6
Seed ortholog evalue2.5e-59
Seed eggNOG ortholog2880.D7FM69
Model size366
KEGG koko:K02969
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0051@1,KOG0900@2759
Ec32 ortholog descriptionRibosomal protein S10, eukaryotic/archaeal
Ec32 orthologEc-16_004860.1
Cds size366
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842424.809175-CDS-E_fasciculatus_S2_contig7625:3565..36681696842424.809175-CDS-E_fasciculatus_S2_contig7625:3565..3668Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7625 3566..3668 +
1696842424.8253577-CDS-E_fasciculatus_S2_contig7625:4530..47931696842424.8253577-CDS-E_fasciculatus_S2_contig7625:4530..4793Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7625 4531..4793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7625.15793.1prot_E_fasciculatus_S2_contig7625.15793.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7625 3566..4793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7625.15793.1

>prot_E_fasciculatus_S2_contig7625.15793.1 ID=prot_E_fasciculatus_S2_contig7625.15793.1|Name=mRNA_E_fasciculatus_S2_contig7625.15793.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp
MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKV
SGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKE
ITSISIEPGVEVEVTIADAAF*
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mRNA from alignment at E_fasciculatus_S2_contig7625:3566..4793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7625.15793.1 ID=mRNA_E_fasciculatus_S2_contig7625.15793.1|Name=mRNA_E_fasciculatus_S2_contig7625.15793.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1228bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7625:3566..4793+ (Ectocarpus fasciculatus EfasUO2)
ATGTCTGCTTACGTCAAGGGCAAGGGCCTCGGCCAGGAGGAGGCGCGGGT GCACCGCATCCGCATCACCCTCACCTCGAAGAACGTCAAGAACCTCGAGA AGGGTGCGTGCAACGCATGTACATACTCGTACTGCTGTGTATACCGTGGA GTGAATTGAAGTGAAGTGAAGAGGCCGAGCGATGGCACCTCCCAAAGACT TTTAAAGGCTTTCAAAGCTCGATTAGATTGCCCCACAACCAAAAGGGGGT GCGGAAAGAGTCCGATAGTCTCTACGGAAAACCCTCCACGAGAAGTTCTA AGCGTTGTGGTGGCAATCGAGCTTGGAAATGGGTCTAGTGGGGGTGCCTC TTGGTGAATCGTACCCAGAGATTCAACCCAAGTGCGATATGCGCTTAGCT TTTCCTTGCAGGTTGGAAGCATGGTGTTACTTCTTGAATGATTTGCTAGA AATCGTCGACCGTCTGCCGCTTGTGGTGTAGGAAGTGCGCGGCGACGACC CGTTGGTTTATCAGATATATAACCAATAGGGAGGGCCGCGACGGTTTGTG ATGATCGGCAACGATTCGAACAACCTCAAGCCGTAATTCTTCCAAAGGTG TGGACTGGCGTGGTCTGGTCTGCTTTGTGCTGCGCCGCAGCTGCTGCCAG GTGGTATCGGACACACGTTGATTTGTTCTGGTTCCATGGCTTGTTGACGG TGTTCATCGTAGCAGAGCCCGCAATACTGCTGTAATTTGGTTCCCAAAAC CCTCAACCACCTCGGTTGTAATGACTTGCTCATCGAATGGAATTTCTTTT TGTTTTTTCGGTGCAACATGACACGTTTTGCCCCACATATACACCCTGTG ACCCCGAACTGAAAGTGTCCCGCATTCCTCTACTCTCACGACGGCTGGAC GCAGTGCTCTGCTTGTTTTGACCAACCGCTCTCTGCGCGTGTGCTGCTCG CTCGCTGTCCTGCAGTTTGCGCGGACTTGAAGAAGGGCGCGGTCGAGAAG AAGCTCAAGGTGTCGGGGCCCGTACGCCTGCCCACCAAGAAGCTCAAGAT CGTGACCCGCAAGTCGCCCTGCGGAGAGGGAACCAACACTTGGGACCGCT TCGAGATGCGCATCCACAAGCGCATCCTGGACCTGCACTCCCCCTCCGAG ATCGTCAAGGAGATCACGTCCATCTCCATCGAGCCCGGAGTGGAGGTCGA GGTCACCATCGCCGACGCCGCCTTCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7625:3566..4793+

>mRNA_E_fasciculatus_S2_contig7625.15793.1 ID=mRNA_E_fasciculatus_S2_contig7625.15793.1|Name=mRNA_E_fasciculatus_S2_contig7625.15793.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7625:3566..4793+ (Ectocarpus fasciculatus EfasUO2)
ATGTCTGCTTACGTCAAGGGCAAGGGCCTCGGCCAGGAGGAGGCGCGGGT
GCACCGCATCCGCATCACCCTCACCTCGAAGAACGTCAAGAACCTCGAGA
AGGTTTGCGCGGACTTGAAGAAGGGCGCGGTCGAGAAGAAGCTCAAGGTG
TCGGGGCCCGTACGCCTGCCCACCAAGAAGCTCAAGATCGTGACCCGCAA
GTCGCCCTGCGGAGAGGGAACCAACACTTGGGACCGCTTCGAGATGCGCA
TCCACAAGCGCATCCTGGACCTGCACTCCCCCTCCGAGATCGTCAAGGAG
ATCACGTCCATCTCCATCGAGCCCGGAGTGGAGGTCGAGGTCACCATCGC
CGACGCCGCCTTCTAA
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