mRNA_E_fasciculatus_S2_contig7623.15790.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7623.15790.1
Unique NamemRNA_E_fasciculatus_S2_contig7623.15790.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Tr-type (G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE64_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 7.650e-31
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    4 VLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLDTEIR 180
            VLKARPRCVP GSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLDTEIR
Sbjct:  703 VLKARPRCVPTGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLDTEIR 761
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.030e-22
Identity = 42/57 (73.68%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    4 VLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLDTE 174
            V+KARPRCVP+G+TAH+++T  RPIC+E+Y DCRALGRFVLRQKG TVAVGLVL+ +
Sbjct:  380 VIKARPRCVPSGATAHVQLTLSRPICVERYSDCRALGRFVLRQKGQTVAVGLVLELK 436
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MM82_9CRYP)

HSP 1 Score: 68.9 bits (167), Expect = 1.810e-13
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 QVLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVG 156
            +VLK +PR +P  +TA +++TCQR +C+E +G+C+ALGRF LR+ G T+A G
Sbjct:   78 EVLKKKPRAIPRHTTAVVQVTCQRRVCVEAFGECKALGRFTLREGGLTIAAG 129
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Translation (elongation factor 1-alpha n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCK8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.940e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 QVLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLD 168
            +V K +PRC+    +A ++ITCQRPICLE + D R LGRF LR +G+T+A G+V D
Sbjct:  567 EVEKKKPRCITRNCSAVVQITCQRPICLELFADFRQLGRFTLRDRGSTLAAGIVTD 622
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Tr-type (G domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBF6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.240e-12
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 QVLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLD 168
            +V K +PRC+   S+A ++ITCQRPICLE + + R LGRF LR +G T+A G+V +
Sbjct:  572 EVDKKKPRCITRNSSAVVQITCQRPICLELFAEFRQLGRFTLRDRGVTLAAGIVTE 627
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Tr-type (G domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7U7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.280e-12
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 QVLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLD 168
            +V K RPRC+     A +   C RP+C+E++ D R LGRF+LRQKG TVAVG+V +
Sbjct:  739 EVKKERPRCLTGNMLALVEFQCARPVCVERFEDSRPLGRFILRQKGETVAVGIVTE 794
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Tr-type (G domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1K1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.720e-11
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    4 VLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLD 168
            V K RPRC+    +A ++ITCQRPICLE++   R LGRF LR +G T+A G++ +
Sbjct:  558 VAKKRPRCITREKSAVVQITCQRPICLEEFASYRQLGRFTLRDRGVTLAAGIITE 612
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Tr-type (G domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D0E6_SAPPC)

HSP 1 Score: 66.6 bits (161), Expect = 2.360e-11
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 QVLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLD 168
            +V K +PRC+    +A ++ITC RPICLE + D R LGRF LR +GAT+A G++ +
Sbjct:  565 EVEKKKPRCITRNCSAVVQITCTRPICLELFADFRQLGRFTLRDRGATLAAGIITE 620
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Aste57867_4350 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBL7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.230e-11
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    4 VLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLD 168
            V K +PRC+    +A ++ITCQRP+CLE + D R LGRF LR +G T+A G+V +
Sbjct:  612 VEKKKPRCITRNCSAVVQITCQRPVCLELFSDFRQLGRFTLRDRGVTLAAGIVSE 666
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BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Match: Eukaryotic (peptide chain release factor GTP-binding subunit n=6 Tax=Culex TaxID=53527 RepID=B0X1I9_CULQU)

HSP 1 Score: 65.1 bits (157), Expect = 8.240e-11
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 QVLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVAVGLVLD 168
            +V+K  PRC+   S A + I  QRP+C+E+Y DC+ LGR +LR  G T+A GLV D
Sbjct:  630 EVVKKNPRCLGNNSCALVDIEFQRPVCMERYADCKELGRIMLRVSGVTIAAGLVTD 685
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7623.15790.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Tr-type7.650e-3198.31G domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
P-loop4.030e-2273.68containing nucleoside triphosphate hydrolase prote... [more]
Hypothetical1.810e-1351.92protein (Fragment) n=1 Tax=Cryptomonas curvata Tax... [more]
Translation1.940e-1253.57elongation factor 1-alpha n=1 Tax=Thraustotheca cl... [more]
Tr-type9.240e-1251.79G domain-containing protein n=1 Tax=Aphanomyces eu... [more]
Tr-type9.280e-1251.79G domain-containing protein n=5 Tax=Monodopsidacea... [more]
Tr-type1.720e-1150.91G domain-containing protein n=1 Tax=Pythium brassi... [more]
Tr-type2.360e-1150.00G domain-containing protein n=3 Tax=Saprolegniacea... [more]
Aste57867_43503.230e-1150.91protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Eukaryotic8.240e-1150.00peptide chain release factor GTP-binding subunit n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7623contigE_fasciculatus_S2_contig7623:124..306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score122.1
Seed ortholog evalue9e-26
Seed eggNOG ortholog2880.D8LL19
Preferred nameHBS1L
Model size183
KEGG koko:K12595,ko:K14416
KEGG Pathwayko03015,ko03018,ko05134,map03015,map03018,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001882,GO:0001883,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003747,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006986,GO:0006996,GO:0007154,GO:0007165,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0023052,GO:0030163,GO:0030674,GO:0030968,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034427,GO:0034620,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0040029,GO:0042221,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043928,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060090,GO:0060255,GO:0065007,GO:0070125,GO:0070478,GO:0070481,GO:0070651,GO:0070887,GO:0070966,GO:0071310,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1903008,GO:1905354,GO:1990533,GO:2000112
Exons1
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG5256@1,KOG0458@2759
Cds size183
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842424.5708537-CDS-E_fasciculatus_S2_contig7623:123..3061696842424.5708537-CDS-E_fasciculatus_S2_contig7623:123..306Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7623 124..306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7623.15790.1prot_E_fasciculatus_S2_contig7623.15790.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7623 124..306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7623.15790.1

>prot_E_fasciculatus_S2_contig7623.15790.1 ID=prot_E_fasciculatus_S2_contig7623.15790.1|Name=mRNA_E_fasciculatus_S2_contig7623.15790.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=61bp
QVLKARPRCVPAGSTAHIRITCQRPICLEKYGDCRALGRFVLRQKGATVA
VGLVLDTEIR*
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mRNA from alignment at E_fasciculatus_S2_contig7623:124..306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7623.15790.1 ID=mRNA_E_fasciculatus_S2_contig7623.15790.1|Name=mRNA_E_fasciculatus_S2_contig7623.15790.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=183bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7623:124..306+ (Ectocarpus fasciculatus EfasUO2)
CAGGTTCTGAAAGCACGGCCGCGATGTGTCCCAGCGGGATCGACTGCGCA
CATCCGCATCACTTGCCAAAGACCTATCTGCCTGGAGAAGTACGGCGACT
GCCGCGCGCTGGGGCGCTTCGTTTTGCGGCAAAAGGGAGCCACTGTGGCG
GTGGGACTTGTCTTGGACACGGAAATCAGATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7623:124..306+

>mRNA_E_fasciculatus_S2_contig7623.15790.1 ID=mRNA_E_fasciculatus_S2_contig7623.15790.1|Name=mRNA_E_fasciculatus_S2_contig7623.15790.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=183bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7623:124..306+ (Ectocarpus fasciculatus EfasUO2)
CAGGTTCTGAAAGCACGGCCGCGATGTGTCCCAGCGGGATCGACTGCGCA
CATCCGCATCACTTGCCAAAGACCTATCTGCCTGGAGAAGTACGGCGACT
GCCGCGCGCTGGGGCGCTTCGTTTTGCGGCAAAAGGGAGCCACTGTGGCG
GTGGGACTTGTCTTGGACACGGAAATCAGATAG
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