mRNA_E_fasciculatus_S2_contig7622.15788.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7622.15788.1
Unique NamemRNA_E_fasciculatus_S2_contig7622.15788.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU99_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.080e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLETQ 126
            GKYSEAKT +ERSLAI KRVYGADHP+VATTLNNLAGLLETQ
Sbjct:  470 GKYSEAKTFYERSLAIDKRVYGADHPQVATTLNNLAGLLETQ 511
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BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.710e-9
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLETQ 126
            GK+ EA+ L+ RSLAI + VYG DHPEVAT LNNLAGLLETQ
Sbjct:   82 GKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAGLLETQ 123
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BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: CHAT (domain-containing protein n=1 Tax=Euhalothece sp. KZN 001 TaxID=1884791 RepID=A0A2K2ZIL2_9CHRO)

HSP 1 Score: 60.5 bits (145), Expect = 3.890e-7
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLE 120
            GKYSEA+ L+E++LA+ KR+Y  DHP+VAT+LNNLAGL E
Sbjct:  240 GKYSEAEPLYEQALAMRKRLYDGDHPDVATSLNNLAGLYE 279
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BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 54.3 bits (129), Expect = 1.450e-6
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGL 114
            GKY EA+ L++R+L I + V G DHP VATTLNNLAGL
Sbjct:    5 GKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: Kinesin (light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.520e-6
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLL 117
            GKY EA+TLF R LAI ++VYGADHPE+AT LNN A  L
Sbjct:  299 GKYKEAETLFRRLLAINEKVYGADHPEIATDLNNWAEFL 337
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BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Methylumidiphilus alinenensis TaxID=2202197 RepID=A0A2W4QJT5_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 1.530e-6
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLET 123
            GKY+EA+ L++ SLAI ++  G DHP+VA +LNNLAGL +T
Sbjct:    9 GKYAEAEPLYQSSLAIAEKALGKDHPDVAVSLNNLAGLNDT 49
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-6
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLE 120
            G Y+EAK L+ERS AI K+V G DHP+VAT LNN AGLL+
Sbjct:  206 GNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLLK 245
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: Tetratricopeptide (repeat protein n=1 Tax=Moorena sp. SIO4G2 TaxID=2607820 RepID=A0A6M0ALV0_9CYAN)

HSP 1 Score: 53.9 bits (128), Expect = 2.500e-6
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLETQSEY 135
            GKYSEA  L ER+L I + + G +HP+VA +LNNLAG  E+Q  Y
Sbjct:   31 GKYSEAIPLAERALEIRQEILGEEHPDVAISLNNLAGFYESQGRY 75
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Chloroflexus sp. Y-396-1 TaxID=867845 RepID=UPI0004B72C22)

HSP 1 Score: 57.4 bits (137), Expect = 4.160e-6
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLETQ 126
            G+Y+ A+ L+ER+LAI +R  G DHP+ AT+LNNLAGLLE Q
Sbjct:  773 GEYAVARPLYERALAIRERTLGPDHPDTATSLNNLAGLLEKQ 814
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.830e-6
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLETQ 126
            GKY EAK+L  RSLA+ ++VYG DHP VAT LNN AG+L+ Q
Sbjct:   35 GKYDEAKSLCVRSLAMYEKVYGPDHPAVATGLNNWAGVLKRQ 76
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7622.15788.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.080e-1490.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
TPR3.710e-973.81repeat-containing protein n=1 Tax=Ectocarpus silic... [more]
CHAT3.890e-767.50domain-containing protein n=1 Tax=Euhalothece sp. ... [more]
tetratricopeptide1.450e-665.79repeat protein n=1 Tax=Desulfobacter hydrogenophil... [more]
Kinesin1.520e-669.23light chain-like protein n=1 Tax=Ectocarpus silicu... [more]
Uncharacterized1.530e-658.54protein n=1 Tax=Candidatus Methylumidiphilus aline... [more]
Uncharacterized2.150e-667.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Tetratricopeptide2.500e-655.56repeat protein n=1 Tax=Moorena sp. SIO4G2 TaxID=26... [more]
tetratricopeptide4.160e-661.90repeat protein n=1 Tax=Chloroflexus sp. Y-396-1 Ta... [more]
Uncharacterized4.830e-664.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7622contigE_fasciculatus_S2_contig7622:221..1954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score65.1
Seed ortholog evalue4.5e-08
Seed eggNOG ortholog2880.D7G180
Model size630
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Ec32 ortholog descriptionTetratricopeptide repeat containing protein
Ec32 orthologEc-25_003510.6
Cds size630
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842424.4189534-CDS-E_fasciculatus_S2_contig7622:220..3461696842424.4189534-CDS-E_fasciculatus_S2_contig7622:220..346Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7622 221..346 -
1696842424.4367173-CDS-E_fasciculatus_S2_contig7622:763..8891696842424.4367173-CDS-E_fasciculatus_S2_contig7622:763..889Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7622 764..889 -
1696842424.4499254-CDS-E_fasciculatus_S2_contig7622:1005..11311696842424.4499254-CDS-E_fasciculatus_S2_contig7622:1005..1131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7622 1006..1131 -
1696842424.4590712-CDS-E_fasciculatus_S2_contig7622:1585..17111696842424.4590712-CDS-E_fasciculatus_S2_contig7622:1585..1711Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7622 1586..1711 -
1696842424.4679458-CDS-E_fasciculatus_S2_contig7622:1828..19541696842424.4679458-CDS-E_fasciculatus_S2_contig7622:1828..1954Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7622 1829..1954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7622.15788.1prot_E_fasciculatus_S2_contig7622.15788.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7622 221..1954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7622.15788.1

>prot_E_fasciculatus_S2_contig7622.15788.1 ID=prot_E_fasciculatus_S2_contig7622.15788.1|Name=mRNA_E_fasciculatus_S2_contig7622.15788.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=210bp
GKYSEAKTLFERSLAIGKRVYGADHPEVATTLNNLAGLLETQSEYAAALS
LYETSHAIRKAALGPEHPDVAQSLNNLADIFRQQGKYSEAKRLVERSLAI
DEKVYGPDHPEISVDLTNLAVVLTTQGEYTAAEKLYERSLTIQEAALGPE
HPDVAVWFNNRAELLHDQGKCAEAEPLFERSLAITEKVYGRDHSEVTTVL
DNLGGLLKTL
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mRNA from alignment at E_fasciculatus_S2_contig7622:221..1954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7622.15788.1 ID=mRNA_E_fasciculatus_S2_contig7622.15788.1|Name=mRNA_E_fasciculatus_S2_contig7622.15788.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1734bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7622:221..1954- (Ectocarpus fasciculatus EfasUO2)
GGCAAGTATTCCGAGGCCAAAACCCTTTTCGAGCGCTCGCTGGCCATCGG
CAAGAGGGTATATGGTGCTGACCACCCTGAAGTTGCGACGACCCTCAACA
ATCTGGCGGGACTGTTGGAAACTCAGGTGGGACACACTTTCCAGATTCCA
TCTACCGTCGGAATATTGCTGTGGACTCTACATTGGCAACGACATTGTTC
CGTGAGTGATTTTGATCGATGGCTCTGTGGTCTCGCTTCGCAGAGCGAGT
ACGCTGCGGCCTTGTCGCTGTACGAGACATCGCATGCCATACGAAAGGCG
GCCCTTGGTCCGGAACATCCGGACGTGGCCCAGTCCCTCAACAACCTGGC
AGATATATTCCGCCAACAGGTGGGGGTATTCCACTAGTGCTCGTGCCGCC
ATGTCGTAACGAATGCAATTCGGTCCGGAATCGAGGCTGTTTGACCTAGT
GTGTTGCTCGTCCGCGCTATATGCTACTTTTTGACGGGCACCGATGTTTC
TAGCCATGTTCTAGAGGTGCAGGCCGTCGTCGTGTGGAGTTTCACGCAAC
TATTAGTCATTCGTATTTGTCATGACGTGTCATTGAAGGCCTTCGCAAAG
TTTTGTATACTAGTGTGTTGTGCTGGAGTGCCTTTGCTCGATGGTGGAGG
ACAGAACGTAAGTGAAGGTATTTAAACGTGCAACACGATGGACTCTTCAC
TTCGATCGATCAGGCTTCAGAATCCAGCTCGATCTCGCTTGGCTGTCAAT
GCGCTTCGTCGGGTGTCCTTCAAGTTGATTCCCGGCTTCCGTTCACTCAT
GCTTCCCTACCAATGTTTCTCAGGGCAAATATTCGGAGGCCAAACGCCTT
GTCGAGCGTTCGCTCGCCATCGACGAAAAGGTGTACGGCCCTGACCACCC
GGAGATATCAGTGGATCTCACCAACTTGGCAGTCGTATTGACGACACAGG
TGCGAGACACTCCTGGCAACGCTCGTGCACACCCAGCGGTTCGTGACCCA
CTCTAGACGAAGCCCCGACAATAGGTACTCCAAGTGATACATCGTCCAAC
CTTCTTGCATCGCAGGGTGAATACACGGCGGCTGAGAAACTGTACGAAAG
ATCGTTGACCATCCAAGAGGCGGCCTTGGGTCCGGAGCATCCAGATGTTG
CGGTGTGGTTCAATAACCGAGCGGAACTGTTGCACGATCAGGTACCGTCA
TTCACAGGGTTGCGGTCGCTCATCACTCACTTCTGGCGGCATGTGACTCG
TTGAACACACCGTTGGATATGCTCTCCACGTGCCTTCGAACGTGGCGCAG
GAAAACATCGTGCCGGAAAAGCGGCGCAGAACTTTCTGCACGTGGTAGGC
TGTAACGGTTTCCTTTCGAACTATGCAAGGTTTCTCGTGGAGTACAACTG
TGGCGGGGCACGTGCTTGGTCCACGAAGCCGACGGTATTCTACGACCTGC
GCGTTGTTGATAATCGAGCCGTTTTCAGTTCTCATCGGTGACTCTATTGC
TTGAATTGTCACAAGCACACAGCGGCACCTTTCAAACTCGACGCATGGCC
AGAAATCCCCTCGAAAGCAAGACATTTTGTACTTCAAATGCTTCGTCGTC
GTTGCCAGGGAAAATGTGCCGAGGCGGAGCCCCTCTTCGAGCGCTCGCTG
GCTATCACTGAGAAGGTCTACGGTCGTGACCACTCGGAGGTGACAACCGT
CCTCGACAATTTAGGGGGCCTGCTCAAGACCCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7622:221..1954-

>mRNA_E_fasciculatus_S2_contig7622.15788.1 ID=mRNA_E_fasciculatus_S2_contig7622.15788.1|Name=mRNA_E_fasciculatus_S2_contig7622.15788.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=630bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7622:221..1954- (Ectocarpus fasciculatus EfasUO2)
GGCAAGTATTCCGAGGCCAAAACCCTTTTCGAGCGCTCGCTGGCCATCGG
CAAGAGGGTATATGGTGCTGACCACCCTGAAGTTGCGACGACCCTCAACA
ATCTGGCGGGACTGTTGGAAACTCAGAGCGAGTACGCTGCGGCCTTGTCG
CTGTACGAGACATCGCATGCCATACGAAAGGCGGCCCTTGGTCCGGAACA
TCCGGACGTGGCCCAGTCCCTCAACAACCTGGCAGATATATTCCGCCAAC
AGGGCAAATATTCGGAGGCCAAACGCCTTGTCGAGCGTTCGCTCGCCATC
GACGAAAAGGTGTACGGCCCTGACCACCCGGAGATATCAGTGGATCTCAC
CAACTTGGCAGTCGTATTGACGACACAGGGTGAATACACGGCGGCTGAGA
AACTGTACGAAAGATCGTTGACCATCCAAGAGGCGGCCTTGGGTCCGGAG
CATCCAGATGTTGCGGTGTGGTTCAATAACCGAGCGGAACTGTTGCACGA
TCAGGGAAAATGTGCCGAGGCGGAGCCCCTCTTCGAGCGCTCGCTGGCTA
TCACTGAGAAGGTCTACGGTCGTGACCACTCGGAGGTGACAACCGTCCTC
GACAATTTAGGGGGCCTGCTCAAGACCCTG
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